EWM21323.1, cds9352 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21323.1
Unique Name	cds9352
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037253.1:119999..120146 -
Alignment location	KK037253.1:119013..119725 -
Alignment location	KK037253.1:118613..118780 -
Alignment location	KK037253.1:118000..118200 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21323.1
Product	eukaryotic initiation factor 4a-iii
Orig transcript id	gnl\|cribi\|Naga_100214g8.6238.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:119999..120146 -
KK037253.1	supercontig	KK037253.1:119013..119725 -
KK037253.1	supercontig	KK037253.1:118613..118780 -
KK037253.1	supercontig	KK037253.1:118000..118200 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0008135	translation factor activity, RNA binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR014014	RNA_helicase_DEAD_Q_motif
IPR000629	RNA-helicase_DEAD-box_CS
IPR011545	DEAD/DEAH_box_helicase_dom
IPR027417	P-loop_NTPase
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd

Homology

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BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|585101506|gb|EWM21323.1| (eukaryotic initiation factor 4a-iii [Nannochloropsis gaditana])

HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0
Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 0

Query:    1 MSRKRASGGGRSEEEIQFDATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            MSRKRASGGGRSEEEIQFDATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV
Sbjct:    1 MSRKRASGGGRSEEEIQFDATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409

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BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|1214712612|gb|OWZ23544.1| (Eukaryotic initiation factor 4A-III [Phytophthora megakarya])

HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 335/391 (85.68%), Postives = 373/391 (95.40%), Query Frame = 0

Query:   19 DATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            D  + VEFT +KD+AV PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDTSSN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQYYSTQIDEMPM+V DL+
Sbjct:   16 DDGDTVEFTTSKDIAVFPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 406

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BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|301112965|ref|XP_002998253.1| (eukaryotic initiation factor 4A-III, putative [Phytophthora infestans T30-4] >gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora infestans T30-4])

HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 335/391 (85.68%), Postives = 372/391 (95.14%), Query Frame = 0

Query:   19 DATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            D  E VEFT +KD+ V PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDTSSN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQYYSTQIDEMPM+V DL+
Sbjct:   16 DDGETVEFTTSKDITVFPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVVSPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 406

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BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|675208525|ref|XP_008913147.1| (eukaryotic initiation factor 4A-III [Phytophthora parasitica INRA-310] >gi|568007858|gb|ETL82085.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica] >gi|568086718|gb|ETN01601.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica INRA-310] >gi|570970008|gb|ETP33127.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica P10297])

HSP 1 Score: 717.227 bits (1850), Expect = 0.000e+0
Identity = 334/391 (85.42%), Postives = 372/391 (95.14%), Query Frame = 0

Query:   19 DATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            D  + VEFT +KD+ V PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDTSSN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQYYSTQIDEMPM+V DL+
Sbjct:   45 DDGDTVEFTTSKDITVFPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 435

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BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|566012240|gb|ETI35151.1| (eukaryotic initiation factor 4A-III [Phytophthora parasitica P1569] >gi|567949677|gb|ETK75405.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica] >gi|567978355|gb|ETL28845.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica] >gi|568037730|gb|ETM35292.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica] >gi|570315960|gb|ETO63908.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica P1976] >gi|570939724|gb|ETP04981.1| eukaryotic initiation factor 4A-III [Phytophthora parasitica CJ01A1])

HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 334/391 (85.42%), Postives = 372/391 (95.14%), Query Frame = 0

Query:   19 DATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            D  + VEFT +KD+ V PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDTSSN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQYYSTQIDEMPM+V DL+
Sbjct:   47 DDGDTVEFTTSKDITVFPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 437

[Close]

BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|695438658|ref|XP_009532514.1| (hypothetical protein PHYSODRAFT_352190 [Phytophthora sojae] >gi|348672361|gb|EGZ12181.1| hypothetical protein PHYSODRAFT_352190 [Phytophthora sojae])

HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 333/391 (85.17%), Postives = 371/391 (94.88%), Query Frame = 0

Query:   19 DATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            D  + VEFT +KD+ V PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ +LQ LDTSSN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL  KM EANFTVSAMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQYYSTQIDEMPM+V DL+
Sbjct:   17 DDGDTVEFTTSKDITVYPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISVLQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 407

[Close]

BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|953499056|emb|CEG39368.1| (eukaryotic initiation factor 4a-iii [Plasmopara halstedii])

HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0
Identity = 331/391 (84.65%), Postives = 372/391 (95.14%), Query Frame = 0

Query:   19 DATEEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            D  + +EFT +KD+ V PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LDTSSN+TQALV+SPTRELAEQTQKV+L+LGD+MNVQCHACIGGKS+GEDIRRLD+GVQVVSGTPGR+FDMIRRRNL+T+++K+LVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+L+SAT+PQEVLD+T+KFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL +KM EANFTV+AMHGDMPQKER+AIM+EFRSG +RVLI TDVWGRGLDVQQVSLVI YDLPNNRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQYYSTQIDEMPM+V DL+
Sbjct:   15 DDEDTIEFTTSKDITVYPTFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVISPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDMIRRRNLRTRNIKLLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVAAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQYYSTQIDEMPMNVADLI 405

[Close]

BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|673015074|ref|XP_008861498.1| (eukaryotic initiation factor 4A-III [Aphanomyces invadans] >gi|574483096|gb|ETW10087.1| eukaryotic initiation factor 4A-III [Aphanomyces invadans])

HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 329/388 (84.79%), Postives = 366/388 (94.33%), Query Frame = 0

Query:   22 EEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            +++EFT T  + V PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P I+G D+IAQSQSGTGKTAVFS+ ILQ LD +SN+TQAL LSPTRELAEQTQKV+L+LGDYMNVQCHACIGGKSIGEDIRRLD+GVQVVSGTPGRVFDMIRRRNL+T+++KMLVIDEADEML+KGFKEQIYDIYRYLPP+TQV+LISATLP EVL+MTKKFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR+KVDWL NKM EANFTV++MHGDMPQ ER+AIM+EFRSG +RVLI TD+WGRGLDVQQVSLVI YDLP+NRELYIHRIGRSGRFGRKGVAINFV++DDI ILRDIEQ+YSTQIDEMPM+V DL+
Sbjct:   30 KQIEFTTTDGLDVVPTFEAMGLKEDLLRGIYAYGFEKPSAIQQRAIRPAIQGRDLIAQSQSGTGKTAVFSISILQTLDCASNETQALALSPTRELAEQTQKVLLALGDYMNVQCHACIGGKSIGEDIRRLDFGVQVVSGTPGRVFDMIRRRNLRTRNIKMLVIDEADEMLSKGFKEQIYDIYRYLPPSTQVLLISATLPAEVLEMTKKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTNKMREANFTVASMHGDMPQNERDAIMQEFRSGGSRVLITTDIWGRGLDVQQVSLVICYDLPSNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDIEQFYSTQIDEMPMNVADLI 417

[Close]

BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|1173961610|gb|OQS07627.1| (eukaryotic initiation factor 4A-III [Thraustotheca clavata])

HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0
Identity = 327/388 (84.28%), Postives = 366/388 (94.33%), Query Frame = 0

Query:   22 EEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            + +EF+ T  + V PTFEAMGL+E+LLRGIY YGFEKPSAIQQRA+ P ++G D+IAQSQSGTGKTAVFS+ ILQ LD SSN+TQALVLSPTRELAEQTQKV+L+LGDYMNVQCHACIGGKSIGEDIRRLD+GVQVVSGTPGRVFDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+LISAT+P EVL+MTKKFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL  KM EANFTV++MHGDMPQKER+AIM+EFRSG +RVLI TD+WGRGLDVQQVSLVI YDLP+NRELYIHRIGRSGRFGRKGVAINFV+++DI ILRDIEQ+YSTQIDEMPM+V DL+
Sbjct:   18 KSLEFSTTSGLDVVPTFEAMGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDLIAQSQSGTGKTAVFSISILQSLDCSSNETQALVLSPTRELAEQTQKVLLALGDYMNVQCHACIGGKSIGEDIRRLDFGVQVVSGTPGRVFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLISATMPAEVLEMTKKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLATKMREANFTVASMHGDMPQKERDAIMQEFRSGGSRVLITTDIWGRGLDVQQVSLVICYDLPSNRELYIHRIGRSGRFGRKGVAINFVKDEDIRILRDIEQFYSTQIDEMPMNVADLI 405

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BLAST of EWM21323.1 vs. NCBI_GenBank
Match: gi|669141640|ref|XP_008606382.1| (eukaryotic initiation factor 4A-III [Saprolegnia diclina VS20] >gi|813181367|ref|XP_012206136.1| eukaryotic initiation factor 4A-III [Saprolegnia parasitica CBS 223.65] >gi|530741666|gb|EQC39908.1| eukaryotic initiation factor 4A-III [Saprolegnia diclina VS20] >gi|641528986|gb|KDO23184.1| eukaryotic initiation factor 4A-III [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0
Identity = 327/388 (84.28%), Postives = 366/388 (94.33%), Query Frame = 0

Query:   22 EEVEFTVTKDVAVKPTFEAMGLREELLRGIYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDTSSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIYDIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANFTVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDEMPMSVHDLV 409
            + +EFT T  + V PTFEA+GL+E+LLRGIY YGFEKPSAIQQRA+ P ++G D+IAQSQSGTGKTAVFS+ ILQ LD SSN+TQALVLSPTRELAEQTQKV+L+LGDYMNVQCHACIGGKSIGEDIRRLD+GVQVVSGTPGRVFDMIRRRNL+T+++KMLVIDEADEMLNKGFKEQIYDIYRYLPP+TQV+LISAT+P EVL+MTKKFMNEP+KVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT++KVDWL  KM EANFTV++MHGDMPQKER+AIM+EFRSG +RVLI TD+WGRGLDVQQVSLVI YDLP+NRELYIHRIGRSGRFGRKGVAINFV+++DI ILRDIEQ+YSTQIDEMPM+V DL+
Sbjct:   15 KNIEFTTTSGLDVVPTFEALGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDLIAQSQSGTGKTAVFSISILQSLDCSSNETQALVLSPTRELAEQTQKVLLALGDYMNVQCHACIGGKSIGEDIRRLDFGVQVVSGTPGRVFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLISATMPAEVLEMTKKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTTKMREANFTVASMHGDMPQKERDAIMQEFRSGGSRVLITTDIWGRGLDVQQVSLVICYDLPSNRELYIHRIGRSGRFGRKGVAINFVKDEDIRILRDIEQFYSTQIDEMPMNVADLI 402

The following BLAST results are available for this feature:

BLAST of EWM21323.1 vs. NCBI_GenBank

BLAST of EWM21323.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585101506\|gb\|EWM21323.1\|	0.000e+0	100.00	eukaryotic initiation factor 4a-iii [Nannochlorops...	[more]
gi\|1214712612\|gb\|OWZ23544.1\|	0.000e+0	85.68	Eukaryotic initiation factor 4A-III [Phytophthora ...	[more]
gi\|301112965\|ref\|XP_002998253.1\|	0.000e+0	85.68	eukaryotic initiation factor 4A-III, putative [Phy...	[more]
gi\|675208525\|ref\|XP_008913147.1\|	0.000e+0	85.42	eukaryotic initiation factor 4A-III [Phytophthora ...	[more]
gi\|566012240\|gb\|ETI35151.1\|	0.000e+0	85.42	eukaryotic initiation factor 4A-III [Phytophthora ...	[more]
gi\|695438658\|ref\|XP_009532514.1\|	0.000e+0	85.17	hypothetical protein PHYSODRAFT_352190 [Phytophtho...	[more]
gi\|953499056\|emb\|CEG39368.1\|	0.000e+0	84.65	eukaryotic initiation factor 4a-iii [Plasmopara ha...	[more]
gi\|673015074\|ref\|XP_008861498.1\|	0.000e+0	84.79	eukaryotic initiation factor 4A-III [Aphanomyces i...	[more]
gi\|1173961610\|gb\|OQS07627.1\|	0.000e+0	84.28	eukaryotic initiation factor 4A-III [Thraustotheca...	[more]
gi\|669141640\|ref\|XP_008606382.1\|	0.000e+0	84.28	eukaryotic initiation factor 4A-III [Saprolegnia d...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9382	rna9382	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications