rna938, rna938 (mRNA) Nannochloropsis gaditana

Overview
Namerna938
Unique Namerna938
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1924
Alignment locationCM002456.1:773796..774918 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1168
Orig transcript idgnl|cribi|Naga_100022g52.829.mrna
Orig protein idgnl|cribi|Naga_100022g52.829
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:773796..774918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g52gene901Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29730.1cds938Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna938rna938-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna938 ID=rna938|Name=rna938|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp
GGGCGCTCGCGTGGCTGCAGGAGAAGGCTCAAGCCCGAGAAGCTTCCACA
TCCCCTTCTTAACTTGTACTCATCGGATCGAACATCACTTCTGACCCTCT
TTGACGTCCTACAGCGGCAATAATTACGCACCGATTTGCGAAAAACTTTT
TCGCAGCTTGTCTAGGTTGACAATGAGCGGTCAGCACGATTTATTCAGGG
GAAGTAAGAATTTCCACCCTCCTAAATTCGAGGATTGCTATCGCGTTTAC
CACGAAGTTGAGGACGTGGGGAAGACTGTGCGCGCGACAAAGCGTCGCGC
ACGCTGGACGTTCAGCTTTGGGGAAAGAGGACAGGAAAGGGAGATTGTCC
TAGCGCACTCAGTTGTCTCGGGAAAGAAGACTATAACTTACGACGGGCGT
CAGATCCACCATTCTGAGGAGCTGTCCCGAACATTCAGCCACTCTTGGTT
TGATGGCGACCACGCTCTGCGCGTTGACATCACTGACCTCGTGGACGTGG
GCCGGGGGCGTAACGACAAGATGTATGAGTTGACGTTGGACGGTGTGCCT
TTTGGCGTTTTGCCCTTGAGGCCTGTACATTTACCACGACTGATGGAGCC
CAACGCGCAGGGCCCTACCGCGCAGGGGAGTGTAACGACCCGGAAGGCGC
CGGGCCAGCGTGAGACAGACGAGGCCTTTAATCCTCGGGGTATTCACAGT
GTTATCACCAGAGCGGGCAGCAGGCCGAAGCTTGGCATGTCTCATTCCCA
GCAACGCCCGACGTCTGTCACGCCTCCGGTGGACCTGCTGGGAGGCTGGG
AGGAAGACGGTGGCGGACTGGCTAGCGATCCATTTTCAGGGCCTGCATCC
AAAGAGCAATTCGCGGACTTCACTGCCAGCTTCAACGAGGCTAAGGGACG
CAGTAACGCGACGGCACACGACTTGGTCAAAGAATTTGGCGGAACGTCCG
AAGTTCAGGAGAGGACCCCACCGCTGTCCATGCCGCCGCTGACGTATGGA
AGGCCATTGCCTACATTCACTTACGTGCAGGGACCTGGTGCAAATCTTTC
CACGGACAAGAGGAGCACGACGGCACTAGTGAGAGTGGCGACGAAGGATG
ACTCAGGGGAGGTGGACGTGGACAAGGCCACAGCGTCATTGGTCAACCTC
AACAACCTGCTCGATGACGAAGGAGCCTCGGGGAGCATCTCTCCTTCAAA
ACTGTACTCTTCCGTGTACGTTGATAACAGGAGCTTGGAAGAGATCAAAG
CGTCGCGCGCGGCTCGCGCACCGCAGCCTCTCGCTCGGCCAATCTTTATC
GATCGCACGCCCCCTCCGGAGATCATGACGTCGCCGGGCGCTCAACCGTT
TTTTCCCGGTCGAGGGATGCTTTCTTCGCCTATGCAGCAGCAGCACATGA
TGGGTGGGACGCCGCAGCCGTGGCAGCAACCCGTTGAAACACCGACAGGG
CCAGCAATGATGGGAGGAGGAAAGTATTTACAGCAACAATTCACATATCA
ACAAAGGCGTGGCGTTCCGAATACAGCCACCACCAGTATGAGCGGCGGTA
GTGGTATGTACTTGCCGCCTCAGCAAATGTCATTTCCAGGACAGGCAATG
ACCTCGCTGAACTCGAACGTCCAGATGCCGGTCCAGATGCAGACTTCTTT
TGTACAACAGCACCAACAGCACCATCCGCAAGCTCATCACGCTTCGTACC
AACAACAAGGCACAGCCTTTCCCTTACGGCCACCAGGATCTCAAAATGAC
CCTTTCTTCGGCCTATGAGTCGTTGCAGGAAGGAGCAAGCACGAGCATAT
CAACGCACTACTGTTTGTCTAGTGGAAACAATACAGCAGTGTCTCGAATC
TAAAGAATATTGAAGCGCTGCTTAAAAAAAATTGTTGTAAGTCATTCTGT
ATGATGATTTCTCGAAGACTCTCC
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protein sequence of rna938

>rna938-protein ID=rna938-protein|Name=rna938|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MARLAEMEEKATAEEEQKIYEESMERKRKESEERTRKLAEKRRRRRLAKK
QRRGHGEVFSSNGRDEDGSMDEEDKDLSETTGKKQCVSENTLCMPIVQIK
DDGNFMQMMLALEKDRRGGQTRNT
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mRNA from alignment at CM002456.1:773796..774918-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna938 ID=rna938|Name=rna938|organism=Nannochloropsis gaditana|type=mRNA|length=1123bp|location=Sequence derived from alignment at CM002456.1:773796..774918- (Nannochloropsis gaditana)
CGAGTCCTTGACTGGCTTTCCCACAGCTTCCACGCACACACAGGCCGCCG
CAAAAATCACACCCTCACGCTCACCACCATCTCCTGTGTTCCAGATTCCA
AGAGATCATCCTTTGTATCATGGGACGCTACACTAGCGTACAAGCGTACG
GCGATAACAACCCGAAGATAGCCAGTGTTGCCTATGATGGCGGTGAGGAT
CGCGATGGCAACCCCCAGCGCAGCAAGGTAAAAGAAAATAGGAGGAGACG
GTAACGCACGCGATAGTCCGGCGCAAGTGTTGACTTGACGACCCGGGCCC
CGAGTACTGCTTCTTCTTTCTTTGTCTTTCTTCGCGCCTCTTTCTTTGTC
GTAACAATGGAACCAAATCACGAGTGGGTTTCTCTGCTTCTGTTTACATC
ACACCTTTTCACGCCTTTGAACATATCTCTAGATTGAAAAGCTGGAAAAT
GTCACAGGAAGTACAGCGGGGGCTAGCAGCAGCAGCTTCCATATATATCG
GGCGCACCGACGCACGGAAATGGCTCGCTTGGCGGAGATGGAGGAGAAAG
CCACAGCAGAGGAAGAGCAGAAGATCTATGAAGAATCTATGGAGCGCAAG
AGGAAGGAGAGTGAAGAGCGGACCCGAAAACTTGCCGAGAAGCGTCGTCG
TAGAAGACTTGCCAAAAAGCAAAGAAGGGGACATGGAGAGGTTTTTTCCA
GCAATGGGAGAGACGAGGACGGGAGCATGGATGAAGAAGACAAGGATTTG
AGCGAAACTACGGGGAAAAAACAGTGCGTTTCGGAGAATACTCTGTGCAT
GCCAATTGTGCAAATCAAGGATGATGGAAATTTCATGCAGATGATGTTGG
CACTAGAAAAGGATCGAAGGGGAGGGCAGACGAGAAACACGTGACATTTT
GTCCTGCATGGAGCAGCGCTCATGGGAATGGAAGACTGCCAAAATAAAAT
TTCACTCGCTGTACAAAAATTCTAGGGGCAAAAAGCATGTAATCGAGCAA
CTATTAAAAGGAGCTGGAGCAGCAACATCTTCAGAGGTTTGACACATGTC
GGTGTGCAGAGGTAGTGGTCACCGAGAGAAAAAGTGCCAATACGTTGGTC
AACAAAGAGACAATCACCAGGCT
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Coding sequence (CDS) from alignment at CM002456.1:773796..774918-

>rna938 ID=rna938|Name=rna938|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002456.1:773796..774918- (Nannochloropsis gaditana)
ATGGCTCGCTTGGCGGAGATGGAGGAGAAAGCCACAGCAGAGGAAGAGCA
GAAGATCTATGAAGAATCTATGGAGCGCAAGAGGAAGGAGAGTGAAGAGC
GGACCCGAAAACTTGCCGAGAAGCGTCGTCGTAGAAGACTTGCCAAAAAG
CAAAGAAGGGGACATGGAGAGGTTTTTTCCAGCAATGGGAGAGACGAGGA
CGGGAGCATGGATGAAGAAGACAAGGATTTGAGCGAAACTACGGGGAAAA
AACAGTGCGTTTCGGAGAATACTCTGTGCATGCCAATTGTGCAAATCAAG
GATGATGGAAATTTCATGCAGATGATGTTGGCACTAGAAAAGGATCGAAG
GGGAGGGCAGACGAGAAACACGTGA
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Synonyms
Publications