rna9375, rna9375 (mRNA) Nannochloropsis gaditana

Overview
Namerna9375
Unique Namerna9375
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1299
Alignment locationKK037253.1:102922..104490 +

Link to JBrowse

Properties
Property NameValue
Productanaphase-promoting complex subunit 2
Orig transcript idgnl|cribi|Naga_100374g1.8589.mrna
Orig protein idgnl|cribi|Naga_100374g1.8589
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:102922..104490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100374g1gene9093Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9375rna9375-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21328.1cds9345Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9375 ID=rna9375|Name=rna9375|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
ATGCACGCCCTTCCCGAAAGTAAGGGCATCCAGACTGTGCATTCAGATAA
GCTGCTAAGATCACTAGAGATGTTGGAGAGGATTCTCACGCATAACGCGG
AAGACGATGTATACCATGACTTTAAGTATTTTGACGAAACATCAGACGCT
TCTCGAGCACAAGGATCCTTGCTCCCTTTGTGGCATTTCACAACAGAAAA
AACACGGAGGAAGCAAGTCACAGCCTTGGTATGGAATCCTTATTACAATG
ATTTGTTCGCAGCAGGATACGGTAGCTACGATTTTCTTAGGCAAGGCGGA
GGGCTCATTTGCTGCTTTTCTTTGAAAAATACAGCAACGCCACAATACGT
TTTCTCGGTGGAGGCAGGGGTTATGTGCCTAGATTTCCATCCCGAACACC
CGTTTCTTTTGGCTGTGGGTTGTTACGATGGCAGCGTCCTCGTGTTCGAT
GTCCGCAACAAGGTCAACGCTCCTGTGTACGCCTCGAAAGTCACCACAGG
AAAACACACTGATCCTGTCTGGAAAGTACGATGGCAGACATTGGAAGAAG
GACTATTGGGGGGAAGCTCTTCAGCAAATCGAGAACTTTGCTTTCTTTCT
GTGGCTGCCGACGGCCAAGTGGTGGCGTGGCTCTTGTCTAAAAATGAACT
GAAAATGGAGCCTCTCATGCAGCTCAAGCTGATCCGAGGCTGTGGTATAT
CCTCCGCCTCCTCGGGTGGAGTCCGCATCGATTTAGGGAGTGGGGTCCAT
GTCGTCAAGCGCCTACCTCGAAATCCTGAATTAGTACCCAGAGGGTACTT
GGGAAACCTGTCTCAGCTTTCGGAGGAGACCCTGAACCACCTCCGGTGGA
TGGCGCAGAAGGACCGGTTGGGCCAAGACTGTTTCCTCCTCGGGGGCCCG
GGGCCTGTGCGTCGCTGGCTAGCCCTAAGCTACTGCGAGCTGGCTGGTCG
GGAGGTAGACTTTATGACACTGTCGCGCGACACCACGGAGTCAGACTTGA
AGCAACGACGGGAGATCCTGCACGCGAATGCCCTTTTCGTGGACCAGGCC
CCGGTGCGGGCGGCGCTGCATGGGCGGGTGCTGATCATCGAGGGCATCGA
GAGGGTGGAGAGGAACGTGCTGCCGACCCTGAACAACCTGTTGGAGGACA
GGAGCATGGCGTTGGAGGACGGGCGTTTCATCATGAAGTCCAGTGGCTAC
ATGCAGCTCCTGGCGGCGGGCCACTCCGAGGCCGACCTCCGAACCCGGGG
CCTGCTCCCTTGCCACCCCGACTTCCGCTGCTATTCCCTCTTCGTCTGA
back to top

protein sequence of rna9375

>rna9375-protein ID=rna9375-protein|Name=rna9375|organism=Nannochloropsis gaditana|type=polypeptide|length=445bp
MAPAAFLSSCSPMHDDEAGMEAVKDAWVEVYEALDRHLLFPSKGQCHNDN
VQLEGSSAKAWMESVVPRHALRLLQKAGLGSLAVEYVADCMDHELARVVK
PAFWEHFDDVGAGREEAENITEMQEHRRVSPHWVIGYMGAALSYADQALR
ERRAKLAMVAELVVPAEAGRLEDMLRTRLAAFIFNTAPDEFYDWWAAFFE
TSLRAWHWQWRRQRRQRREGRDGEEGSEEGDIMMSAEEADDAGYEEDEGA
WEDWGVHAEEVETALKALRRLHWLPLVQSTITSVVKRETENYIERTCAGV
YDEPCLRRVEAWRDAVLMPWLAGLLGEEEEVGGEQTGRGPWTPSAPALGT
PHAPPLTSSFHEWRLRHSFVMQECFVRVRMLEMFDIVRDYPDTVAAARDL
RAALEVTQQHRQLAACLCESMRQRLLHVGANTMQVLDVYIATIQV
back to top

mRNA from alignment at KK037253.1:102922..104490+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9375 ID=rna9375|Name=rna9375|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at KK037253.1:102922..104490+ (Nannochloropsis gaditana)
CGTACAAACAGGCAGCCTCCTGTCTATACACATCATCTTACAGCTCAGAC
TTACTGTTCATAATTGACACAATTTGTCAATTACCGTCCATTTGGTGAGG
TAGCCTCAGCAGGTCGGCGAAGAGACAGAAGACGCACTTGAATGTCCCCG
TGCGACAAGTGGAAAGCGACGGCAAGGCAGCGACCCTGATTATTGAGGCA
GGATCATTTCAGAGGCATCTGGCGACACTGGTGATGGCCCCCGCAGCCTT
TCTTTCGTCATGTTCTCCCATGCACGACGACGAAGCGGGAATGGAAGCGG
TCAAGGACGCCTGGGTGGAAGTCTACGAAGCGCTTGACAGacacctcctt
ttcccgtcaAAAGGTCAATGTCACAACGATAACGTGCAGCTAGAGGGGAG
CTCTGCAAAAGCTTGGATGGAATCAGTCGTTCCACGTCATGCTCTGCGCC
TTTTACAAAAGGCGGGACTCGGAAGCCTGGCGGTGGAATATGTGGCCGAC
TGCATGGATCACGAGCTCGCCCGCGTGGTCAAGCCCGCATTCTGGGAGCA
TTTCGACGATGTCGGTGCCGGTCGTGAAGAAGCAGAAAACATAACAGAAA
TGCAGGAGCATAGACGTGTTTCCCCGCACTGGGTCATAGGATACATGGGC
GCTGCCCTCTCGTACGCAGATCAGGCATTGCGGGAGCGGAGAGCAAAACT
CGCCATGGTTGCGGAGCTCGTTGTGCCTGCCGAGGCGGGGCGGTTGGAAG
ATATGCTGCGGACACGCTTAGCCGCTTTTATATTTAACACAGCCCCTGAC
GAGTTTTATGATTGGTGGGCCGCCTTCTTCGAGACGTCTCTACGAGCATG
GCATTGGCAGTGGAGGCGGCAAAGGCGGCaacggcgggaagggcgggacg
gggaggagggaagcgaggagggagacataATGATGAGTGCGGAAGAAGCG
GATGATGCAGGGtatgaagaggacgaaggagctTGGGAGGATTGGGGGGT
CcatgcggaggaggtggaaactGCGTTGAAGGCACTGCGGCGCTTGCATT
GGCTGCCACTGGTGCAGTCCACCATCACGTCGGTAGTCAAGAGAGAAACA
GAGAATTACATCGAGAGGACTTGCGCGGGCGTGTACGATGAGCCTTGCTT
GCGGCGAGTGGAGGCGTGGAGAGACGCGGTCCTGATGCCATGGTTGGCAG
GGCtgttgggggaggaggaggaggtggggggggagcagacGGGCCGAGGC
CCTTggacgccctccgccccggcGCTTGGCACGCCCCATGCGCCCCCGCT
GACCTCGTCTTTCCACGAGTGGCGGCTTCGGCATTCCTTCGTCATGCAAG
AGTGTTTCGTGCGCGTCCGCATGCTGGAGATGTTCGACATCGTCCGCGAC
TACCCGGACACTGTGGCGGCCGCCCGGGACCTGCGGGCCGCCCTCGAGGT
GACGCAGCAACACCGGCAGCTTGCCGCCTGCCTGTGTGAGAGCATGCGAC
AACGCTTGCTGCACGTGGGCGCCAACACCATGCAGGTCCTGGACGTGTAT
ATCGCGACCATACAGGTTC
back to top

Coding sequence (CDS) from alignment at KK037253.1:102922..104490+

>rna9375 ID=rna9375|Name=rna9375|organism=Nannochloropsis gaditana|type=CDS|length=1336bp|location=Sequence derived from alignment at KK037253.1:102922..104490+ (Nannochloropsis gaditana)
ATGGCCCCCGCAGCCTTTCTTTCGTCATGTTCTCCCATGCACGACGACGA
AGCGGGAATGGAAGCGGTCAAGGACGCCTGGGTGGAAGTCTACGAAGCGC
TTGACAGacacctccttttcccgtcaAAAGGTCAATGTCACAACGATAAC
GTGCAGCTAGAGGGGAGCTCTGCAAAAGCTTGGATGGAATCAGTCGTTCC
ACGTCATGCTCTGCGCCTTTTACAAAAGGCGGGACTCGGAAGCCTGGCGG
TGGAATATGTGGCCGACTGCATGGATCACGAGCTCGCCCGCGTGGTCAAG
CCCGCATTCTGGGAGCATTTCGACGATGTCGGTGCCGGTCGTGAAGAAGC
AGAAAACATAACAGAAATGCAGGAGCATAGACGTGTTTCCCCGCACTGGG
TCATAGGATACATGGGCGCTGCCCTCTCGTACGCAGATCAGGCATTGCGG
GAGCGGAGAGCAAAACTCGCCATGGTTGCGGAGCTCGTTGTGCCTGCCGA
GGCGGGGCGGTTGGAAGATATGCTGCGGACACGCTTAGCCGCTTTTATAT
TTAACACAGCCCCTGACGAGTTTTATGATTGGTGGGCCGCCTTCTTCGAG
ACGTCTCTACGAGCATGGCATTGGCAGTGGAGGCGGCAAAGGCGGCaacg
gcgggaagggcgggacggggaggagggaagcgaggagggagacataATGA
TGAGTGCGGAAGAAGCGGATGATGCAGGGtatgaagaggacgaaggagct
TGGGAGGATTGGGGGGTCcatgcggaggaggtggaaactGCGTTGAAGGC
ACTGCGGCGCTTGCATTGGCTGCCACTGGTGCAGTCCACCATCACGTCGG
TAGTCAAGAGAGAAACAGAGAATTACATCGAGAGGACTTGCGCGGGCGTG
TACGATGAGCCTTGCTTGCGGCGAGTGGAGGCGTGGAGAGACGCGGTCCT
GATGCCATGGTTGGCAGGGCtgttgggggaggaggaggaggtgggggggg
agcagacGGGCCGAGGCCCTTggacgccctccgccccggcGCTTGGCACG
CCCCATGCGCCCCCGCTGACCTCGTCTTTCCACGAGTGGCGGCTTCGGCA
TTCCTTCGTCATGCAAGAGTGTTTCGTGCGCGTCCGCATGCTGGAGATGT
TCGACATCGTCCGCGACTACCCGGACACTGTGGCGGCCGCCCGGGACCTG
CGGGCCGCCCTCGAGGTGACGCAGCAACACCGGCAGCTTGCCGCCTGCCT
GTGTGAGAGCATGCGACAACGCTTGCTGCACGTGGGCGCCAACACCATGC
AGGTCCTGGACGTGTATATCGCGACCATACAGGTTC
back to top
Synonyms
Publications