rna9371, rna9371 (mRNA) Nannochloropsis gaditana

Overview
Namerna9371
Unique Namerna9371
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1682
Alignment locationKK037253.1:87005..88219 +

Link to JBrowse

Properties
Property NameValue
Productcysteine-rich pdz-binding protein
Orig transcript idgnl|cribi|Naga_100075g2.2888.mrna
Orig protein idgnl|cribi|Naga_100075g2.2888
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:87005..88219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100075g2gene9088Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9371rna9371-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21354.1cds9341Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9371 ID=rna9371|Name=rna9371|organism=Nannochloropsis gaditana|type=mRNA|length=1682bp
ATGGACATAATTGAGAATTTCTGGGGGCATGACTATGGGAGAGGGGACCT
TTGTAGAGGTGATAGAGACATCGGGGGGGGAGGCGATCGGACTGAGGGCG
ATCGAGTTGCTGTTGCTGCTCAGGGGAAGGTCAAAGGGCCTCATTTCATT
TCTGGCAACCTGTGTATAAGTGCTCCCTTTCACGCCATGGTGGTGGAAAT
CCTGGCCGTGTCCCATTCTGGGCATGTGCGTCTTCGTGATAACATGTTCT
TCTACAAACAAAACACATACGTCGTAGTGCTAGCAGGAGGAGCGGAGTCA
CGCCATCCTTCCATCAGGAGAAGCAGCTATGGCATTCAGAAAAATCGTCA
CCGCCACCTTCCTCTTGGTCGTGACCCTTCTTTGCTGTTGTCTCACCAAC
ATCTTTGGTACTGCGGCGCCCGTCAATGTTGTAGTCACGCTCCGTGGCAA
GAAGTACGACTTATCAGCGGAAAGCGTGCAGGATATTCAGGCCCAAATGG
AAGGTAAATCCGGCCTGAAACCCGGCCAGCAAGCCATTTTGTTCAAAGGA
AAGCAGCTGGGCGCGAGTGAGAGCCTGAGTGCGGCGGGCGTGGTGGAAGG
GGATACCCTGAACATTGTGCCCACAAAGGGAGACGTGCCCCGGGCGCCCC
CTCCCAGACCTCGCGCTAGCTTCTCCTCCGCCAGCGCGGAGGATGAGGAC
CTCGCCACGCCCGCGGGGGTTTCTTCTCCAGCGGCAGGTGCTGGACCCTC
CACCCCGGACGAGCTCTTGGCCATGCTGAATGGCATGTTGGGGAACTCGG
GCCTGGGGGGCCTGGCGGGGGCGAGCTCGCCCGAGGACGCGGCCAAGGTC
TTCCAGGGCATGGACATGGGCAAGGTGGCCAAGATGTATCAGGCCTTCAT
CTGGAAGCTGGTCCGCTCCCCCATCGTCGCTCGCTACTTGTCGAGCGAGG
AAGACATGGAGCAGTTGCGTTTGAAGCTCAAGGAGAGCTTCGAGAACGTC
TCGCAGGATCCCAAGGTGGCGGCGCAGATGGCCCCTTTCCTGAACGACGA
CTTCCGCGCCATGATGGAGGATACCCGGAAGTTTAGGGAGGAAATTCAAA
AAGTGGTGGATTTTTACATGAAGATGCCAGACCCTGACGCGGACGGGAGC
GCCTTCAGCGGGTTGGACATGAGCATGTTCGAGGGCCTGGCCAAGAGCCC
CGACGAGGACGCGAGCGACGATCTGGACAATCTGGGGGACGAGGACGAGG
ATGAGGGGGACGGGGAGGGCGAGCTGTAGGGGCGGTGGGCCTGGCTGAGT
CGGGCGGCGAAGAGGGAAGAGGGCCGGGAGCAGGGGGAGCAGGGGGAGCA
GGGGGAGGCGCTGGGGGGAAGACGAAAACTTGGCCTGGAGGCGCGAAAGC
AAAGAGACATGTAACGGTCGGCGGAAGCATCTTTCTGCATTTAATTCTTT
TTCGGAGGCTTGTTTCAGTATTCCCATTTCGAAATCGAAGACGGAGGCAC
CAGTCCTCTGGCCCACAGTCGATTGACCACACTGAAGCCCCACGTCCTGC
TCACGCTCGCTTCCCGTTCCTACCGGAGAATCGCCCTCTCCACCACGCGG
TGCCTGCGTTTTCCCAGCCTGTCCCCCACCCCTCCCTGCCTCGCTCCGTC
CCTCTCCTCATTGTCCGCCTTTTCCGCTATCT
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protein sequence of rna9371

>rna9371-protein ID=rna9371-protein|Name=rna9371|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSE
KRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVG
DTKLYKMSSK
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mRNA from alignment at KK037253.1:87005..88219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9371 ID=rna9371|Name=rna9371|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp|location=Sequence derived from alignment at KK037253.1:87005..88219+ (Nannochloropsis gaditana)
gatgTCTCTATCACCTCTACAAAGGTCCCCTCTCCCATAGTCATGCCCCC
AGAAATTCTCAATTATGTCCATGTGATCCTATCCTAGCTTATTTTTTTGG
GAAAAAGTTGTGGATGTCTCTGAACAGCCGTCCTGTCGCCCGTCATGAAA
ACAGCATTACCGCCTGGAGGAAAAGCCTAGTAGGAGTGGGAGCACTGGGG
AAATTTCTTTCACTTTGCCAGGCCTTCAGCCCGTTGAGCTCCACCACACC
CTAATCAAAAACACCAGACACGAATTGAACTGTGGGAGAGGTAAGTGGCA
ATAAGGATGGCGGGGGAAATATTCGACGGTCATCTTGAAAATATGATTGC
GTACTCTCAAGTCACATTCGCAGCGCCTGATTTTCTAATCGCTCTCTTAT
TCGTCTGGCAGATGGTTTGCGATGCGTGTGAGAAAAAGCTTGGCAAACTC
TGCGTCCCGGATAAGTGGAAAGAAGGCAGTCGCAATGTGACCggcgggaa
agacggggGCCGGGTCCCCACTTCCAGCGgtccctctgcctccttgaATA
AATTATCGGAAAAGCGCAAGGCCCGCTTGGCggaagcaggcggaggcttG
GGAAGGCAGTGTCGCATTTGTAAGGTGCGCATCATGGACGTGCAGCGGCA
TTACTGCAACGGGTGTGCATACAAGGTAAATgttgggagggcgggagggc
gagcaaaCATAAGACGACGTCAGGCCCGAAGCAGGGACACCTCACAAGCT
CACACCTCTCTCCTCAAACATGACACAGAAAGCAATTTGTGCCATGTGCG
GGAGAAAGGTCGGCGACACAAAGCTCTACAAAATGAGCAGCAAATGAAAT
GGCAGGATCTGAGCTTTCGAGCGAGTAAGGTGTCTTTCAATGATTCTACA
CCAGGATGTAGCACGTGTACAGTTTTGCTGATAGATTTCCACCTGTGAGA
ATTGCCTTGTTTTTTCGCAAATTGCGCATCGAAAGTAACCTCACAAAATG
AAGTACGCCGTGAAAGCAGTGGTTTGCTCGGTGATTTCTCATTTGGAAAT
CAAATGGACATCCGCCATCCGAAAAGTGGTTTGAATTCCTCTTTAATTCA
AGCTTAACATTCTCTTCTAAAGTCAATGGAACACAAATGCTATTATTGTC
ACTGGCTGGGCAAAGTCCACTTCACTAAGAAAATAAAAGGTACGAAAAAT
TTGAAAAATAGCACC
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Coding sequence (CDS) from alignment at KK037253.1:87005..88219+

>rna9371 ID=rna9371|Name=rna9371|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at KK037253.1:87005..88219+ (Nannochloropsis gaditana)
ATGGTTTGCGATGCGTGTGAGAAAAAGCTTGGCAAACTCTGCGTCCCGGA
TAAGTGGAAAGAAGGCAGTCGCAATGTGACCggcgggaaagacggggGCC
GGGTCCCCACTTCCAGCGgtccctctgcctccttgaATAAATTATCGGAA
AAGCGCAAGGCCCGCTTGGCggaagcaggcggaggcttGGGAAGGCAGTG
TCGCATTTGTAAGGTGCGCATCATGGACGTGCAGCGGCATTACTGCAACG
GGTGTGCATACAAGAAAGCAATTTGTGCCATGTGCGGGAGAAAGGTCGGC
GACACAAAGCTCTACAAAATGAGCAGCAAATGAATGGTTTGCGATGCGTG
TGAGAAAAAGCTTGGCAAACTCTGCGTCCCGGATAAGTGGAAAGAAGGCA
GTCGCAATGTGACCggcgggaaagacggggGCCGGGTCCCCACTTCCAGC
GgtccctctgcctccttgaATAAATTATCGGAAAAGCGCAAGGCCCGCTT
GGCggaagcaggcggaggcttGGGAAGGCAGTGTCGCATTTGTAAGGTGC
GCATCATGGACGTGCAGCGGCATTACTGCAACGGGTGTGCATACAAGAAA
GCAATTTGTGCCATGTGCGGGAGAAAGGTCGGCGACACAAAGCTCTACAA
AATGAGCAGCAAATGA
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Synonyms
Publications