EWM21354.1, cds9341 (CDS) Nannochloropsis gaditana

Overview
NameEWM21354.1
Unique Namecds9341
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:87416..87679 +
Alignment locationKK037253.1:87783..87851 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21354.1
Productcysteine-rich pdz-binding protein
Orig transcript idgnl|cribi|Naga_100075g2.2888.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:87416..87679 +
KK037253.1supercontigKK037253.1:87783..87851 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019367PDZ-binding_CRIPT
Homology
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|585101539|gb|EWM21354.1| (cysteine-rich pdz-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 221.09 bits (562), Expect = 4.926e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSSK 110
            MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSSK
Sbjct:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSSK 110          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|325184170|emb|CCA18628.1| (conserved unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 114.005 bits (284), Expect = 2.000e-28
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSSK 110
            MVC+ CE KL  L VPDKWK+G+RNVTGGKDGGR       +   NKL EK+  R++     + R+CRIC+ +I     HYCN CAY+K IC+MCGRK+ D   Y MSSK
Sbjct:    1 MVCEKCEAKLTTLIVPDKWKDGARNVTGGKDGGR-------AVGTNKLVEKK--RISNRFSPMERRCRICRSKIGQ-NAHYCNQCAYQKGICSMCGRKMLDISQYNMSSK 100          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|325184169|emb|CCA18627.1| (conserved unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 112.464 bits (280), Expect = 7.327e-28
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSS 109
            MVC+ CE KL  L VPDKWK+G+RNVTGGKDGGR       +   NKL EK+  R++     + R+CRIC+ +I     HYCN CAY+K IC+MCGRK+ D   Y MSS
Sbjct:    1 MVCEKCEAKLTTLIVPDKWKDGARNVTGGKDGGR-------AVGTNKLVEKK--RISNRFSPMERRCRICRSKIGQ-NAHYCNQCAYQKGICSMCGRKMLDISQYNMSS 99          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|597737600|ref|XP_007231035.1| (PREDICTED: cysteine-rich PDZ-binding protein [Astyanax mexicanus])

HSP 1 Score: 102.834 bits (255), Expect = 2.648e-26
Identity = 55/109 (50.46%), Postives = 64/109 (58.72%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSS 109
            MVCD CEKKLGK+  PD WK+G+RN T          S G   + NK+   +KAR    G      CRICK  +     HYC GCAYKK ICAMCG+KV DTK YK +S
Sbjct:    1 MVCDKCEKKLGKVITPDTWKDGARNTT---------ESGGRKLNENKMLTSKKARFDPYGKSGFATCRICKSSVHQAGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|669152796|ref|XP_008611960.1| (cysteine-rich PDZ-binding protein [Saprolegnia diclina VS20] >gi|813110911|ref|XP_012195039.1| cysteine-rich PDZ-binding protein [Saprolegnia parasitica CBS 223.65] >gi|530736312|gb|EQC34554.1| cysteine-rich PDZ-binding protein [Saprolegnia diclina VS20] >gi|641540461|gb|KDO34243.1| cysteine-rich PDZ-binding protein [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 101.293 bits (251), Expect = 8.586e-26
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMS 108
            MVC  CE+KL KL VPDKWK+G+RN  GGKDGGR   ++      ++ +             + R CRICK ++     HYC  CAYKK ICAMCGRKV DTK+  MS
Sbjct:    1 MVCGKCEEKLSKLIVPDKWKDGARNTMGGKDGGRKLATNAALGKKHRFTP------------MSRACRICKSKVAQ-NAHYCQDCAYKKGICAMCGRKVADTKMLNMS 95          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|1173943177|gb|OQR92062.1| (hypothetical protein ACHHYP_04080 [Achlya hypogyna])

HSP 1 Score: 100.908 bits (250), Expect = 1.273e-25
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMS 108
            MVC  CE+KL KL VPDKWK+G+RN TGGKDGGR    +      ++ +             + R CRICK ++     HYC  C+YKK ICAMCGRK+ DTK+  MS
Sbjct:    1 MVCGKCEEKLSKLIVPDKWKDGARNTTGGKDGGRKIAQNSALGKKHRFTP------------MSRACRICKSKVSQ-NAHYCQDCSYKKGICAMCGRKIADTKMLNMS 95          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|1143420580|ref|XP_019964370.1| (PREDICTED: cysteine-rich PDZ-binding protein [Paralichthys olivaceus])

HSP 1 Score: 100.908 bits (250), Expect = 1.523e-25
Identity = 55/109 (50.46%), Postives = 66/109 (60.55%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSS 109
            MVC+ CEKKLGK+  PD WK+G+RN T  + GGR         + NK+   +KAR      G    CRICK  +     HYC GCAYKK ICAMCG+KV DTK YK +S
Sbjct:    1 MVCEKCEKKLGKVITPDTWKDGARNTT--ESGGR-------KLNENKMLTSKKARFDPYSKGGFTTCRICKSSVHQSGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|229366638|gb|ACQ58299.1| (Cysteine-rich PDZ-binding protein [Anoplopoma fimbria])

HSP 1 Score: 100.523 bits (249), Expect = 2.232e-25
Identity = 56/109 (51.38%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSS 109
            MVC+ CEKKLGK+  PD WK+G+RN T G  GGR         + NK+   +KAR           CRICK  +     HYC GCAYKK ICAMCGRKV DTK YK +S
Sbjct:    1 MVCEKCEKKLGKVITPDTWKDGARNTTEG--GGR-------KLNENKILTSKKARFDPYSKTGFATCRICKSSVHQSGSHYCQGCAYKKGICAMCGRKVLDTKNYKQTS 100          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|537170883|gb|ERE74280.1| (cysteine-rich PDZ-binding protein [Cricetulus griseus])

HSP 1 Score: 100.138 bits (248), Expect = 3.194e-25
Identity = 55/110 (50.00%), Postives = 65/110 (59.09%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSSK 110
            MVC+ CEKKLG +  PD WK+G+RN T  + GGR         + NK    +KAR    G      CRICK  +     HYC GCAYKK ICAMCG+KV DTK YK +SK
Sbjct:    1 MVCEKCEKKLGTVITPDTWKDGARNTT--ESGGR-------KLNENKALTSKKARFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSK 101          
BLAST of EWM21354.1 vs. NCBI_GenBank
Match: gi|1049209123|ref|XP_017556505.1| (PREDICTED: cysteine-rich PDZ-binding protein [Pygocentrus nattereri])

HSP 1 Score: 100.138 bits (248), Expect = 3.237e-25
Identity = 53/109 (48.62%), Postives = 64/109 (58.72%), Query Frame = 0
Query:    1 MVCDACEKKLGKLCVPDKWKEGSRNVTGGKDGGRVPTSSGPSASLNKLSEKRKARLAEAGGGLGRQCRICKVRIMDVQRHYCNGCAYKKAICAMCGRKVGDTKLYKMSS 109
            MVC+ CEKKLG++  PD WK+G+RN T          S G   + NK+   +KAR    G      CRICK  +     HYC GCAYKK ICAMCG+KV DTK YK +S
Sbjct:    1 MVCEKCEKKLGRVITPDTWKDGARNTT---------ESGGRKLNENKMLTSKKARFDPYGKSGFATCRICKSSVHQAGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTS 100          
The following BLAST results are available for this feature:
BLAST of EWM21354.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101539|gb|EWM21354.1|4.926e-73100.00cysteine-rich pdz-binding protein [Nannochloropsis... [more]
gi|325184170|emb|CCA18628.1|2.000e-2853.64conserved unknown protein putative [Albugo laibach... [more]
gi|325184169|emb|CCA18627.1|7.327e-2853.21conserved unknown protein putative [Albugo laibach... [more]
gi|597737600|ref|XP_007231035.1|2.648e-2650.46PREDICTED: cysteine-rich PDZ-binding protein [Asty... [more]
gi|669152796|ref|XP_008611960.1|8.586e-2649.07cysteine-rich PDZ-binding protein [Saprolegnia dic... [more]
gi|1173943177|gb|OQR92062.1|1.273e-2548.15hypothetical protein ACHHYP_04080 [Achlya hypogyna... [more]
gi|1143420580|ref|XP_019964370.1|1.523e-2550.46PREDICTED: cysteine-rich PDZ-binding protein [Para... [more]
gi|229366638|gb|ACQ58299.1|2.232e-2551.38Cysteine-rich PDZ-binding protein [Anoplopoma fimb... [more]
gi|537170883|gb|ERE74280.1|3.194e-2550.00cysteine-rich PDZ-binding protein [Cricetulus gris... [more]
gi|1049209123|ref|XP_017556505.1|3.237e-2548.62PREDICTED: cysteine-rich PDZ-binding protein [Pygo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9371rna9371Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications