rna9370, rna9370 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9370
Unique Name	rna9370
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1352
Alignment location	KK037253.1:84884..87076 -

Link to JBrowse

Properties


Property Name	Value
Product	conserved unknown protein
Orig transcript id	gnl\|cribi\|Naga_100075g3.2889.mrna
Orig protein id	gnl\|cribi\|Naga_100075g3.2889
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:84884..87076 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100075g3	gene9087	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9370	rna9370-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21355.1	cds9340	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:84884..87076-
coding sequence from alignment at KK037253.1:84884..87076-

mRNA sequence

>rna9370 ID=rna9370|Name=rna9370|organism=Nannochloropsis gaditana|type=mRNA|length=1352bp
TTTGAAGGATTTTGACGCGGTCATTCCGATGAGCAAAACACATAAAGATC
GTATCGATCTTGCAGGTTGCACTATGGGACCTCGACGTCACGCTTGCTCT
TTCTCCCTTCAATAGACCACCTCCTCTTACGAGCCTCCGCACAACACATA
CAGGTTTAACAAACGAAAGGAGGATTTTATCTTATTGAGAAGTCATTAGA
ATCAATGACAGCCGCTAAGCAGGCAATCATCGTTGTTGGCGGCGCTGGTG
CGTTAGGAAAGAGTTTAATCAACTCCCTCAGAACCTCCCCTGGCAGTAGC
GCCAGTAGCATAATTAGCGTTGATTTCTTCCCCAATCCACGTGCGACACA
CTCGGTCCCTTTAATGGCAACAATTGGATCTATAACTTGGCCTGAAACGG
CCATGCAGGCGTTAGCAAAAGTGCGGGCATGTTTAAAGGACGAGGGCGGG
TCGGAAATGCCATGCCGGGCCGTATTGCATGTTGCAGGAGGGTGGTCAGG
AGGTGGTGTGCACGACCCCGGCTTTCTGGAGAGCATGAATCGCATGTGGA
TCTGCAATGTACAGAGTGCGGCCCTCGGAGCCCACATGGCTGGCCTGTAC
CTTCGACCGCAGTATCCGTCGGTGGGGCGTCAAGCCGGGATGGGCGATGC
CACGCGCGATGTGGGCGACGGAGGGACTAAGAGCGGGGGTTTGATGGTAT
TGACGGGAGCAGGAGCAGCTGTTGACCCTAAGGCATGCGTGAGCATGGTT
GGATATGGTTTGAGCAAGAGTGCGACTCACTTTCTGACGAGGACTGTTGC
AGTGGATCCGGAAGTGGTCAGGGCAGGCCTGACGGCCCTGTCTATCTTGC
CTACGACGATTGACACTCCAGCAAATCGGATGGTTATGCCCGACGCTGAT
TTTGGAGAATGGACACGGCCGGAAATTATTGCGGAGAGGCTGGTGACCTG
GGTGGAAGACGCATCTCAGCGGCCCGCTTCGGGATCCCTGATCCGGGTGG
TTACATCTCAAGGTAAGACATCCTGGATGCCTGTCTTGGATTCCTCCTCG
TGAAGTTTATTTTTTAGAAGCCTCGATGGATGTGAAAAATCATTTCGTTA
TGTATGCATTGAAAATGACAGATAAATTGAGGATTTCATAGATGTCCCGA
GAATGTTGAGAACAAACAATCAAAATTGTGTAAGGTAAAAATCGTGCAGG
ACAGGATGATGGATTTTCTTTGTATAGATGAGAATAATTAGTCCCAAATA
GGAATAGAGGAGATGTCATGGAATTTGACCGTCCTTACTATCACAATAGT
AAACCAGAGACGTGGTGGAAAACGCCTGGTAGAAAAATATTTTCTCTTTT
CT

protein sequence of rna9370

>rna9370-protein ID=rna9370-protein|Name=rna9370|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MAFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESV
QDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTK
GDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAML
NGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIV
ARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTR
KFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLD
NLGDEDEDEGDGEGEL

mRNA from alignment at KK037253.1:84884..87076-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9370 ID=rna9370|Name=rna9370|organism=Nannochloropsis gaditana|type=mRNA|length=2193bp|location=Sequence derived from alignment at KK037253.1:84884..87076- (Nannochloropsis gaditana)
ATGGACATAATTGAGAATTTCTGGGGGCATGACTATGGGAGAGGGGACCT
TTGTAGAGGTGATAGAGACATCGGGGGGGGAGGCGATCGGACTGAGGGCG
ATCGAGTTGCTGTTGCTGCTCAGGGGAAGGTCAAAGGGCCTCATTTCATT
TCTGGCAACCTGTGTATAAGTGCTCCCTTTCACGCCATGGTGGTGGAAAT
CCTGGCCGTGTCCCATTCTGGGCATGTGCGTCTTCGTGATAACATGTTCT
TCTACAAACAAAACACATACGTCGTAGTGCTAGCAGGAGGAGCGGAGTCA
CGCCATCCTTCCATCAGGAGAAGCAGCTATGGCATTCAGAAAAATCGTCA
CCGCCACCTTCCTCTTGGTCGTGACCCTTCTTTGCTGTTGTCTCACCAAC
ATCTTTGGTACTGCGGTGAGTGTTGGGACCGGAAAACTTCTAAGTCTCGC
TTAGACGAGGCAGCCCTCCATTCTACGAAGCGGGGCGTGCGAGGATAGGC
CCCTCTGGAAGACGCGGTTCAATTTCAATTTTATTCACAAATGCATGTAC
ATGTGTACACGTATAGATCACACATTTGTCGCATGAGTGGGAACCGGATC
TGTCAGATGTTTTTAAACCACACAAAGGTTGTGGGTTTTGCCGCATTGCT
TTTCCTTCATTTCCGATCTCTCTGTAGCTTCTACCGCAACTAGTATGCAT
GTGACTTTTTCGGATACACACGATATGGCCCACATGAATTTTCACGTATA
GCCATTTTTTCATTGTCCAGGCGCCCGTCAATGTTGTAGTCACGCTCCGT
GGCAAGAAGTACGACTTATCAGCGGAAAGCGTGCAGGATATTCAGGCCCA
AATGGAAGGTAAATCCGGCCTGAAACCCGGCCAGCAAGCCATTTTGTTCA
AAGGAAAGCAGCTGGGCGCGAGTGAGAGCCTGAGTGCGGCGGGCGTGGTG
GAAGGGGATACCCTGAACATTGTGCCCACAAAGGGAGACGTGCCCCGGGC
GCCCCCTCCCAGACCTCGCGCTAGCTTCTCCTCCGCCAGCGCGGAGGATG
AGGACCTCGCCACGCCCGCGGGGGTTTCTTCTCCAGCGGCAGGTGCTGGA
CCCTCCACCCCGGACGAGCTCTTGGCCATGCTGAATGGCATGTTGGGGAA
CTCGGGCCTGGGGGGCCTGGCGGGGGCGAGCTCGCCCGAGGACGCGGCCA
AGGTCTTCCAGGGCATGGACATGGGCAAGGTGGCCAAGATGTATCAGGCC
TTCATCTGGAAGCTGGTCCGCTCCCCCATCGTCGCTCGCTACTTGTCGAG
CGAGGAAGACATGGAGCAGTTGCGTTTGAAGCTCAAGGAGAGCTTCGAGA
ACGTCTCGCAGGATCCCAAGGTGGCGGCGCAGATGGCCCCTTTCCTGAAC
GACGACTTCCGCGCCATGATGGAGGATACCCGGAAGTTTAGGGAGGTACG
TGAAGGAGTGAGGGAGGGATGAAGGGAGGTGAGGAGAGAGGGAGGGAGGA
AAGATGGGGCTGCCGAGAGACAGCGTTGGTTGCACGCGCGAACTGTCGAT
GCCCCGCTTGCTGGCTCTGAATCGACCCGCCCAATACCTTCTTTTGTCCA
GGAAATTCAAAAAGTGGTGGATTTTTACATGAAGATGCCAGACCCTGACG
CGGACGGGAGCGCCTTCAGCGGGTTGGACATGAGCATGTTCGAGGGCCTG
GCCAAGAGCCCCGACGAGGACGCGAGCGACGATCTGGACAATCTGGGGGA
CGAGGACGAGGATGAGGGGGACGGGGAGGGCGAGCTGTAGGGGCGGTGGG
CCTGGCTGAGTCGGGCGGCGAAGAGGGAAGAGGGCCGGGAGCAGGGGGAG
CAGGGGGAGCAGGGGGAGGCGCTGGGGGGAAGACGAAAACTTGGCCTGGA
GGCGCGAAAGCAAAGAGACATGTAACGGTCGGCGGAAGCATCTTTCTGCA
TTTAATTCTTTTTCGGAGGCTTGTTTCAGTATTCCCATTTCGAAATCGAA
GACGGAGGCACCAGTCCTCTGGCCCACAGTCGATTGACCACACTGAAGCC
CCACGTCCTGCTCACGCTCGCTTCCCGTTCCTACCGGAGAATCGCCCTCT
CCACCACGCGGTGCCTGCGTTTTCCCAGCCTGTCCCCCACCCCTCCCTGC
CTCGCTCCGTCCCTCTCCTCATTGTCCGCCTTTTCCGCTATCT

Coding sequence (CDS) from alignment at KK037253.1:84884..87076-

>rna9370 ID=rna9370|Name=rna9370|organism=Nannochloropsis gaditana|type=CDS|length=2853bp|location=Sequence derived from alignment at KK037253.1:84884..87076- (Nannochloropsis gaditana)
GAAATTCAAAAAGTGGTGGATTTTTACATGAAGATGCCAGACCCTGACGC
GGACGGGAGCGCCTTCAGCGGGTTGGACATGAGCATGTTCGAGGGCCTGG
CCAAGAGCCCCGACGAGGACGCGAGCGACGATCTGGACAATCTGGGGGAC
GAGGACGAGGATGAGGGGGACGGGGAGGGCGAGCTGTAGGCGCCCGTCAA
TGTTGTAGTCACGCTCCGTGGCAAGAAGTACGACTTATCAGCGGAAAGCG
TGCAGGATATTCAGGCCCAAATGGAAGGTAAATCCGGCCTGAAACCCGGC
CAGCAAGCCATTTTGTTCAAAGGAAAGCAGCTGGGCGCGAGTGAGAGCCT
GAGTGCGGCGGGCGTGGTGGAAGGGGATACCCTGAACATTGTGCCCACAA
AGGGAGACGTGCCCCGGGCGCCCCCTCCCAGACCTCGCGCTAGCTTCTCC
TCCGCCAGCGCGGAGGATGAGGACCTCGCCACGCCCGCGGGGGTTTCTTC
TCCAGCGGCAGGTGCTGGACCCTCCACCCCGGACGAGCTCTTGGCCATGC
TGAATGGCATGTTGGGGAACTCGGGCCTGGGGGGCCTGGCGGGGGCGAGC
TCGCCCGAGGACGCGGCCAAGGTCTTCCAGGGCATGGACATGGGCAAGGT
GGCCAAGATGTATCAGGCCTTCATCTGGAAGCTGGTCCGCTCCCCCATCG
TCGCTCGCTACTTGTCGAGCGAGGAAGACATGGAGCAGTTGCGTTTGAAG
CTCAAGGAGAGCTTCGAGAACGTCTCGCAGGATCCCAAGGTGGCGGCGCA
GATGGCCCCTTTCCTGAACGACGACTTCCGCGCCATGATGGAGGATACCC
GGAAGTTTAGGGAGATGGCATTCAGAAAAATCGTCACCGCCACCTTCCTC
TTGGTCGTGACCCTTCTTTGCTGTTGTCTCACCAACATCTTTGGTACTGC
GGAAATTCAAAAAGTGGTGGATTTTTACATGAAGATGCCAGACCCTGACG
CGGACGGGAGCGCCTTCAGCGGGTTGGACATGAGCATGTTCGAGGGCCTG
GCCAAGAGCCCCGACGAGGACGCGAGCGACGATCTGGACAATCTGGGGGA
CGAGGACGAGGATGAGGGGGACGGGGAGGGCGAGCTGTAGGCGCCCGTCA
ATGTTGTAGTCACGCTCCGTGGCAAGAAGTACGACTTATCAGCGGAAAGC
GTGCAGGATATTCAGGCCCAAATGGAAGGTAAATCCGGCCTGAAACCCGG
CCAGCAAGCCATTTTGTTCAAAGGAAAGCAGCTGGGCGCGAGTGAGAGCC
TGAGTGCGGCGGGCGTGGTGGAAGGGGATACCCTGAACATTGTGCCCACA
AAGGGAGACGTGCCCCGGGCGCCCCCTCCCAGACCTCGCGCTAGCTTCTC
CTCCGCCAGCGCGGAGGATGAGGACCTCGCCACGCCCGCGGGGGTTTCTT
CTCCAGCGGCAGGTGCTGGACCCTCCACCCCGGACGAGCTCTTGGCCATG
CTGAATGGCATGTTGGGGAACTCGGGCCTGGGGGGCCTGGCGGGGGCGAG
CTCGCCCGAGGACGCGGCCAAGGTCTTCCAGGGCATGGACATGGGCAAGG
TGGCCAAGATGTATCAGGCCTTCATCTGGAAGCTGGTCCGCTCCCCCATC
GTCGCTCGCTACTTGTCGAGCGAGGAAGACATGGAGCAGTTGCGTTTGAA
GCTCAAGGAGAGCTTCGAGAACGTCTCGCAGGATCCCAAGGTGGCGGCGC
AGATGGCCCCTTTCCTGAACGACGACTTCCGCGCCATGATGGAGGATACC
CGGAAGTTTAGGGAGATGGCATTCAGAAAAATCGTCACCGCCACCTTCCT
CTTGGTCGTGACCCTTCTTTGCTGTTGTCTCACCAACATCTTTGGTACTG
CGGAAATTCAAAAAGTGGTGGATTTTTACATGAAGATGCCAGACCCTGAC
GCGGACGGGAGCGCCTTCAGCGGGTTGGACATGAGCATGTTCGAGGGCCT
GGCCAAGAGCCCCGACGAGGACGCGAGCGACGATCTGGACAATCTGGGGG
ACGAGGACGAGGATGAGGGGGACGGGGAGGGCGAGCTGTAGGCGCCCGTC
AATGTTGTAGTCACGCTCCGTGGCAAGAAGTACGACTTATCAGCGGAAAG
CGTGCAGGATATTCAGGCCCAAATGGAAGGTAAATCCGGCCTGAAACCCG
GCCAGCAAGCCATTTTGTTCAAAGGAAAGCAGCTGGGCGCGAGTGAGAGC
CTGAGTGCGGCGGGCGTGGTGGAAGGGGATACCCTGAACATTGTGCCCAC
AAAGGGAGACGTGCCCCGGGCGCCCCCTCCCAGACCTCGCGCTAGCTTCT
CCTCCGCCAGCGCGGAGGATGAGGACCTCGCCACGCCCGCGGGGGTTTCT
TCTCCAGCGGCAGGTGCTGGACCCTCCACCCCGGACGAGCTCTTGGCCAT
GCTGAATGGCATGTTGGGGAACTCGGGCCTGGGGGGCCTGGCGGGGGCGA
GCTCGCCCGAGGACGCGGCCAAGGTCTTCCAGGGCATGGACATGGGCAAG
GTGGCCAAGATGTATCAGGCCTTCATCTGGAAGCTGGTCCGCTCCCCCAT
CGTCGCTCGCTACTTGTCGAGCGAGGAAGACATGGAGCAGTTGCGTTTGA
AGCTCAAGGAGAGCTTCGAGAACGTCTCGCAGGATCCCAAGGTGGCGGCG
CAGATGGCCCCTTTCCTGAACGACGACTTCCGCGCCATGATGGAGGATAC
CCGGAAGTTTAGGGAGATGGCATTCAGAAAAATCGTCACCGCCACCTTCC
TCTTGGTCGTGACCCTTCTTTGCTGTTGTCTCACCAACATCTTTGGTACT
GCG

Synonyms

Publications