EWM21355.1, cds9340 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|585101540|gb|EWM21355.1| (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query: 1 MAFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL 316
MAFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL
Sbjct: 1 MAFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL 316
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|299470539|emb|CBN78527.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 85.5001 bits (210), Expect = 7.128e-16 Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 0
Query: 9 ATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLS-AESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTK 100
++FL+ LL ++ G A PV+V VTLRGKKYD+ A SV+D+Q +E ++GL QQ++LFKG L L AGV +GDT+NIVP+K
Sbjct: 4 SSFLISAALLIGSAVDVLGGAGPVSVKVTLRGKKYDVQDATSVEDVQKSVEEQAGLAKEQQSVLFKGSLLKPELELEEAGVSDGDTVNIVPSK 96
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|219123898|ref|XP_002182253.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406214|gb|EEC46154.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 79.7221 bits (195), Expect = 1.126e-13 Identity = 82/264 (31.06%), Postives = 124/264 (46.97%), Query Frame = 0
Query: 10 TFLLVVTLLCCCLTNIFGTAAPV-NVVVTLRGKKYDLS-AESVQDIQAQMEGKSG-LKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAF--IWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMA--PFLNDDFRAMMEDTRKFREEIQKVVDFYMKM 266
T L TLL L +APV NV VTLRGKKYD++ +VQD+Q ++E SG L P Q +LF GK+L +++ L+ GV +G LNIVP+ S A+ + + AT + +A AM+ L +GL G ++ K G D GKV M ++ + +++ SPI Y+S KL+ES + + +P + + MA P + D ++ D +RE +Q Y M
Sbjct: 6 TLFLSATLLGRWLA---AASAPVPNVQVTLRGKKYDVTDVRTVQDLQDRIEEVSGILAPQQGRVLFDGKRLESTDVLADVGVADGAQLNIVPS----------------SKAAGKVKKTATTTESKTDSA-----------AMMEDYLRQAGLDG----DKLDELMKGMSGSD-GKVPSMEESLGMMNEMMNSPIFQEYMSDPA-------KLEESRQMILNNPMLKSMMAGMPGMED----ILNDPEAWREAMQAAASLYKNM 223
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|1210517721|dbj|GAX23417.1| (hypothetical protein FisN_15Lh139 [Fistulifera solaris]) HSP 1 Score: 71.2478 bits (173), Expect = 1.139e-10 Identity = 63/244 (25.82%), Postives = 115/244 (47.13%), Query Frame = 0
Query: 26 FGTAAPVNVVVTLRGKKYDLS-AESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAF--IWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKM 266
FG A ++V VT+RGKKYD+S +V+D+Q Q++ +SG++P Q ILF GK+L + LS AGV +G L++ +PR +P+ + SA +P P + +M+ + NSG+ S ++ K G D + M ++ + ++ SP+ +++ E++E+ R + + +P + M+ D ++ D +RE + + Y M
Sbjct: 15 FGVEASIDVQVTVRGKKYDISGVTTVRDLQEQLK-ESGVEPSQHTILFGGKRLEDDDVLSDAGVEDGAQLSV------IPRINNNKPKTKKAKTSA------------APTTSTSPQMNADTQSMMEEYMKNSGI----DTSKLDEMMKSMGGGD--GMPDMQESLKQMSSMMNSPMFQEFMNDPENLEKSR-------QMILNNPMLKGMMSGMPGMD--ELLNDPVAWREAMMAAANMYKNM 224
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|1210518035|dbj|GAX22966.1| (hypothetical protein FisN_15Hh139 [Fistulifera solaris]) HSP 1 Score: 67.3958 bits (163), Expect = 2.214e-9 Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 0
Query: 26 FGTAAPVNVVVTLRGKKYDLS-AESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVP 98
FG A ++V VT+RGKKYD+S +V+D+Q Q++ +SG++P Q ILF GK+L + LS AGV +G L+++P
Sbjct: 15 FGVEASIDVQVTVRGKKYDISGVTTVKDLQEQLK-ESGVEPSQHTILFGGKRLEDDDVLSDAGVEDGAQLSVIP 87 The following BLAST results are available for this feature:
BLAST of EWM21355.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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