EWM21355.1, cds9340 (CDS) Nannochloropsis gaditana

Overview
NameEWM21355.1
Unique Namecds9340
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:86662..86748 -
Alignment locationKK037253.1:85632..86306 -
Alignment locationKK037253.1:85287..85475 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21355.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100075g3.2889.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:86662..86748 -
KK037253.1supercontigKK037253.1:85632..86306 -
KK037253.1supercontigKK037253.1:85287..85475 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|585101540|gb|EWM21355.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MAFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL 316
            MAFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL
Sbjct:    1 MAFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL 316          
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|299470539|emb|CBN78527.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.5001 bits (210), Expect = 7.128e-16
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 0
Query:    9 ATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLS-AESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTK 100
            ++FL+   LL     ++ G A PV+V VTLRGKKYD+  A SV+D+Q  +E ++GL   QQ++LFKG  L     L  AGV +GDT+NIVP+K
Sbjct:    4 SSFLISAALLIGSAVDVLGGAGPVSVKVTLRGKKYDVQDATSVEDVQKSVEEQAGLAKEQQSVLFKGSLLKPELELEEAGVSDGDTVNIVPSK 96          
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|219123898|ref|XP_002182253.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406214|gb|EEC46154.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 79.7221 bits (195), Expect = 1.126e-13
Identity = 82/264 (31.06%), Postives = 124/264 (46.97%), Query Frame = 0
Query:   10 TFLLVVTLLCCCLTNIFGTAAPV-NVVVTLRGKKYDLS-AESVQDIQAQMEGKSG-LKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAF--IWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMA--PFLNDDFRAMMEDTRKFREEIQKVVDFYMKM 266
            T  L  TLL   L      +APV NV VTLRGKKYD++   +VQD+Q ++E  SG L P Q  +LF GK+L +++ L+  GV +G  LNIVP+                S A+ + +  AT     + +A           AM+   L  +GL G       ++  K   G D GKV  M ++   + +++ SPI   Y+S          KL+ES + +  +P + + MA  P + D    ++ D   +RE +Q     Y  M
Sbjct:    6 TLFLSATLLGRWLA---AASAPVPNVQVTLRGKKYDVTDVRTVQDLQDRIEEVSGILAPQQGRVLFDGKRLESTDVLADVGVADGAQLNIVPS----------------SKAAGKVKKTATTTESKTDSA-----------AMMEDYLRQAGLDG----DKLDELMKGMSGSD-GKVPSMEESLGMMNEMMNSPIFQEYMSDPA-------KLEESRQMILNNPMLKSMMAGMPGMED----ILNDPEAWREAMQAAASLYKNM 223          
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|1210517721|dbj|GAX23417.1| (hypothetical protein FisN_15Lh139 [Fistulifera solaris])

HSP 1 Score: 71.2478 bits (173), Expect = 1.139e-10
Identity = 63/244 (25.82%), Postives = 115/244 (47.13%), Query Frame = 0
Query:   26 FGTAAPVNVVVTLRGKKYDLS-AESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAF--IWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKM 266
            FG  A ++V VT+RGKKYD+S   +V+D+Q Q++ +SG++P Q  ILF GK+L   + LS AGV +G  L++      +PR    +P+   +  SA            +P     P    +  +M+   + NSG+      S  ++  K   G D   +  M ++   +  ++ SP+   +++  E++E+ R       + +  +P +   M+     D   ++ D   +RE +    + Y  M
Sbjct:   15 FGVEASIDVQVTVRGKKYDISGVTTVRDLQEQLK-ESGVEPSQHTILFGGKRLEDDDVLSDAGVEDGAQLSV------IPRINNNKPKTKKAKTSA------------APTTSTSPQMNADTQSMMEEYMKNSGI----DTSKLDEMMKSMGGGD--GMPDMQESLKQMSSMMNSPMFQEFMNDPENLEKSR-------QMILNNPMLKGMMSGMPGMD--ELLNDPVAWREAMMAAANMYKNM 224          
BLAST of EWM21355.1 vs. NCBI_GenBank
Match: gi|1210518035|dbj|GAX22966.1| (hypothetical protein FisN_15Hh139 [Fistulifera solaris])

HSP 1 Score: 67.3958 bits (163), Expect = 2.214e-9
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 0
Query:   26 FGTAAPVNVVVTLRGKKYDLS-AESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVP 98
            FG  A ++V VT+RGKKYD+S   +V+D+Q Q++ +SG++P Q  ILF GK+L   + LS AGV +G  L+++P
Sbjct:   15 FGVEASIDVQVTVRGKKYDISGVTTVKDLQEQLK-ESGVEPSQHTILFGGKRLEDDDVLSDAGVEDGAQLSVIP 87          
The following BLAST results are available for this feature:
BLAST of EWM21355.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585101540|gb|EWM21355.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|299470539|emb|CBN78527.1|7.128e-1648.39conserved unknown protein [Ectocarpus siliculosus][more]
gi|219123898|ref|XP_002182253.1|1.126e-1331.06predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210517721|dbj|GAX23417.1|1.139e-1025.82hypothetical protein FisN_15Lh139 [Fistulifera sol... [more]
gi|1210518035|dbj|GAX22966.1|2.214e-947.30hypothetical protein FisN_15Hh139 [Fistulifera sol... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9370rna9370Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications