rna9364, rna9364 (mRNA) Nannochloropsis gaditana

Overview
Namerna9364
Unique Namerna9364
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1044
Alignment locationKK037253.1:68592..70593 +

Link to JBrowse

Properties
Property NameValue
ProductDNA-binding SAP
Orig transcript idgnl|cribi|Naga_100075g11.2883.mrna
Orig protein idgnl|cribi|Naga_100075g11.2883
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:68592..70593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100075g11gene9081Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9364rna9364-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21349.1cds9334Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9364 ID=rna9364|Name=rna9364|organism=Nannochloropsis gaditana|type=mRNA|length=1044bp
ATGGGCTCAATTTCCCTGGGCGAAGTGCGCATAGCTGGCTCTCTTCTGGC
TACGCTCATACAGGTAGTGGGGCAGCGGGCAGGTCGGCGTGCAGAGGGCT
TGTTGCTCGGGGATGCCCTTGTCCACACCGTGGCCGTCACGGATGACACA
CAAGAAGCGAGGGAGCGCACAGACCTGCAATTAGACGTGACAGGGTATGT
GTCCACAAATCAAAAGGACGCGTTCTATGAACCACTGACTGGAACCATGA
ACGCGACAAAAATTGCCGAGGCCACATCAGAAGTTAATAGGCGACATAGG
ATGGTTGGCTGGTATGTGGCTCGAAATACGGCAAGCACCAAGCCAAGCTT
GCGAGACCTGGCCATACTGAGGCATTTGGGTGACTACTTGAGGTCCACAT
CGCGAGAAGATGATGCTGAAGCTCTCCGGGGAGAGAGCAGGACGCCAAGC
GAGGCAAAGAAATCCACCAGCGGGACGACATTAGATAGGCGAGGAAAGGA
TCCAGCTTTAGCCTTTCCGGCAGTGCTAATCGTGTTCTCCCTGGACCTGC
GATCCTCCTCGGAGGCTCAGGGCATTTCATATGCCTGCCACTACCTTTCT
CCTGCTGCTCCCTTTTCTTCCTCCGAGAGTGCGTCCCTCGCCTACCAAAC
GCATCTTCTCAAGGTCCGAAATGTCTCACACGACTCTACCGCCGAGTACC
AGGCCTACACAGGGGGCACGTACCCGTCATTGCTCTCCCCGCACTCGTCA
CTCCCCTCGAGAACCTCCCAACCCTCTGCAAGGATGCCCTCCCCAGTTAT
CCCCTCTATGCGTCCCGGCTTGGCAGACTTCGCACGCGCCATTCCTCCTC
CTCATGTGACGGAATACGAACTGTATCTAGATCAGATTTTGGAGCATCTG
CACGGCTTAGTGGATGAGATACGCGCGGAAGAACTGGAATTGAGTGCGTT
GAGAAAAAAGCAAGGACGATTAAAACATTTATTGCGGGCGGAAAAAGAGA
AGGGTAGGGGTATCTCTGGAGAAAGAGAGGAAAAATTGGTTTAA
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protein sequence of rna9364

>rna9364-protein ID=rna9364-protein|Name=rna9364|organism=Nannochloropsis gaditana|type=polypeptide|length=533bp
MALPTLETIKGMKVAELKKELEKLDLSVKGLKADLMQRLMQHVEKAAAAE
EGGSDDVDGLNDKPEPQDETLKPSVKAIVEEELVGTASKGPSGSSREKEQ
EGEVMAEAAPSAVHPSPSPAPANPSELEHNPDRGIEKEKPSHLTSPAEAS
AAPQAAEPSEIGSSLRQVADALPSSPSSATVPSESAQSSDMAAAVTQKGH
ASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSA
TIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSE
ECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRL
QEGGDKTGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAPP
HLGGAESGGSVRRKRELGPSPERIVRARRDAEGAKEAVKEEEDEKPAMPT
LEELFRSTSTPPKLYWTPVPEDQVARKRERLKELKAEAKLEAKKREAAGG
VRQPAADRRWAGRDGGGGGGYRSRNRSPPRRRW
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mRNA from alignment at KK037253.1:68592..70593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9364 ID=rna9364|Name=rna9364|organism=Nannochloropsis gaditana|type=mRNA|length=2002bp|location=Sequence derived from alignment at KK037253.1:68592..70593+ (Nannochloropsis gaditana)
TTCAGAGAAGAAGTCAACAGGATCGAGGGCActggaaaggcgggaagtgC
AACGCCCGCAGCCCGCCCATCGAGGCAGTATATCTTTTGAGATACAATTG
AGATCCTCATGGAACCCAGTATTTTGTTCGTACCCTTTCAGGTGAAAAAC
CAAGAGACGGACAAAAACGACATCACACCGCAGCACCATTTCTCATCCTA
TATAGTACCATGGCGCTGCCCACCCTGGAAACAATTAAGGGCATGAAGGT
CGCTGAGCTTAAGAAGGAATTGGAGAAGCTCGATTTGTCTGTGAAGGGGC
TGAAAGCAGACTTAATGCAGCGACTCATGCAGCACGTCGAgaaggcagcc
gccgccgaggaagggggcagtGACGACGTTGATGGCTTAAACGACAAACC
GGAGCCCCAAGACGAGACTTTGAAGCCTTCTGTGAAGGCTATtgtcgagg
aggaattggTAGGCACTGCATCGAAAGGTCCGTCTGGATCCTCgcgcgag
aaggagcaggaaggggaggtaaTGGCGGAGGCTGCCCCGTCTGCCGTCCA
CCCAAGTCccagccccgccccggccaACCCCTCGGAGCTCGAGCACAATC
CCGATCGAGGAATAGAGAAGGAGAAACCTTCCCATCTGACCTCGCCAGCC
GAGGCCTCGGCGGCGCCACAAGCCGCTGAGCCTTCTGAGATCGGGAGCTC
CCTGCGGCAGGTTGCGGATgccctgccctcttctccctcctcggccacTG
TGCCGAGCGAGTCAGCCCAGTCGTCTGAcatggcggcggcagtgACCCAG
AAGGGACACGCTTCACCTGCCCCGATTGATGCTGAGGTGAAGAAAGGCAC
AGGTCCGAGTGAGACCGCCCTcctggccagggaggagtcTCTGTCCGGCG
CTGATGCCCCTgagcccgccgccgcccttgTGCCAGCCCCAAAGAATCCG
AGAAGCGCCACCATCCGCGTGGACGGCTTCATCCGTCCCTTCcgcctggt
ggcggccaaggagatgctggaggagcggggagggggccctCTTGTTGGAG
AGGATGGCATGTGGATGGATGTGATCAAGACGCACTGTTACGCCACCTTC
CAGTCGGAGGAGTGCGCGGCGCGAGCACGGATTGCATTGCACAAGTACCA
GTGGCCGGAGCGGGGGGGCGTCCTGACCGCCGATTTCTCGCCCAAGACCG
CGGCCCAGGttacggaggaggacaagctCCTCAAGAAGGCGCGCGCGGCC
TCCAGgctccaggaaggaggggacaagacaggcggggcgaggccggggga
gcCTCTGGCGGCCACGCCCCGTACGACTGCCCTCGCGGCGGCGAGCGCGG
AGACGCAACGGGTCAGCAACAGcctcgtgcccccccccgcccccttcgaG
GCTCCACCGCATCTGGGGGGGGCGGAATCGGGGGGTTCGGTACGGCGGAA
GCGGGAGTTAGGGCCCTCACCCGAGAGGATTGTGAGGGCGAGACGCGATg
cggagggggcgaaagaagcagtgaaagaggaggaggacgagaagccCGCG
ATGCCCACACTGGAGGAGCTTTTCCGCTCCACATCCACCCCGCCCAAGCT
GTACTGGACGCCGGTGCCTGAGGACCAGGTCGCGCGGAAGCGAGAGCGGC
tgaaggagctgaaggcgGAAGCAAAGCTGGAAGCCAAAAAGCGCGAGGCG
GCGGGAGGTGTTAGGCAGCCTGCGGCGGACAGGCGCTGGGCGGgtcggga
tggagggggtggggggggctaTAGGTCGCGGAACCGCTCACCGCCACGCA
GGCGCTGGTAGAACATTTGAAGGTGGGGCGGGCAAGCAGGAGTGATGGat
gtgggggggaagggaggcacgAAAAAACATTCGGACGGGGTCGTTTCAGA
CGCCCGCAGGGGCAAGCGTGGGGCCGGGCGAAAACTTTGACGGTAAGAGC
GACACATTTAAAAAAGAGAAGCTGTGCTAAAATCTTGGAACGGCGGCGTC
TA
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Coding sequence (CDS) from alignment at KK037253.1:68592..70593+

>rna9364 ID=rna9364|Name=rna9364|organism=Nannochloropsis gaditana|type=CDS|length=1602bp|location=Sequence derived from alignment at KK037253.1:68592..70593+ (Nannochloropsis gaditana)
ATGGCGCTGCCCACCCTGGAAACAATTAAGGGCATGAAGGTCGCTGAGCT
TAAGAAGGAATTGGAGAAGCTCGATTTGTCTGTGAAGGGGCTGAAAGCAG
ACTTAATGCAGCGACTCATGCAGCACGTCGAgaaggcagccgccgccgag
gaagggggcagtGACGACGTTGATGGCTTAAACGACAAACCGGAGCCCCA
AGACGAGACTTTGAAGCCTTCTGTGAAGGCTATtgtcgaggaggaattgg
TAGGCACTGCATCGAAAGGTCCGTCTGGATCCTCgcgcgagaaggagcag
gaaggggaggtaaTGGCGGAGGCTGCCCCGTCTGCCGTCCACCCAAGTCc
cagccccgccccggccaACCCCTCGGAGCTCGAGCACAATCCCGATCGAG
GAATAGAGAAGGAGAAACCTTCCCATCTGACCTCGCCAGCCGAGGCCTCG
GCGGCGCCACAAGCCGCTGAGCCTTCTGAGATCGGGAGCTCCCTGCGGCA
GGTTGCGGATgccctgccctcttctccctcctcggccacTGTGCCGAGCG
AGTCAGCCCAGTCGTCTGAcatggcggcggcagtgACCCAGAAGGGACAC
GCTTCACCTGCCCCGATTGATGCTGAGGTGAAGAAAGGCACAGGTCCGAG
TGAGACCGCCCTcctggccagggaggagtcTCTGTCCGGCGCTGATGCCC
CTgagcccgccgccgcccttgTGCCAGCCCCAAAGAATCCGAGAAGCGCC
ACCATCCGCGTGGACGGCTTCATCCGTCCCTTCcgcctggtggcggccaa
ggagatgctggaggagcggggagggggccctCTTGTTGGAGAGGATGGCA
TGTGGATGGATGTGATCAAGACGCACTGTTACGCCACCTTCCAGTCGGAG
GAGTGCGCGGCGCGAGCACGGATTGCATTGCACAAGTACCAGTGGCCGGA
GCGGGGGGGCGTCCTGACCGCCGATTTCTCGCCCAAGACCGCGGCCCAGG
ttacggaggaggacaagctCCTCAAGAAGGCGCGCGCGGCCTCCAGgctc
caggaaggaggggacaagacaggcggggcgaggccgggggagcCTCTGGC
GGCCACGCCCCGTACGACTGCCCTCGCGGCGGCGAGCGCGGAGACGCAAC
GGGTCAGCAACAGcctcgtgcccccccccgcccccttcgaGGCTCCACCG
CATCTGGGGGGGGCGGAATCGGGGGGTTCGGTACGGCGGAAGCGGGAGTT
AGGGCCCTCACCCGAGAGGATTGTGAGGGCGAGACGCGATgcggaggggg
cgaaagaagcagtgaaagaggaggaggacgagaagccCGCGATGCCCACA
CTGGAGGAGCTTTTCCGCTCCACATCCACCCCGCCCAAGCTGTACTGGAC
GCCGGTGCCTGAGGACCAGGTCGCGCGGAAGCGAGAGCGGCtgaaggagc
tgaaggcgGAAGCAAAGCTGGAAGCCAAAAAGCGCGAGGCGGCGGGAGGT
GTTAGGCAGCCTGCGGCGGACAGGCGCTGGGCGGgtcgggatggaggggg
tggggggggctaTAGGTCGCGGAACCGCTCACCGCCACGCAGGCGCTGGT
AG
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Synonyms
Publications