EWM21349.1, cds9334 (CDS) Nannochloropsis gaditana

Overview
NameEWM21349.1
Unique Namecds9334
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:68801..70402 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21349.1
ProductDNA-binding SAP
Orig transcript idgnl|cribi|Naga_100075g11.2883.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:68801..70402 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Homology
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|585101534|gb|EWM21349.1| (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 1050.81 bits (2716), Expect = 0.000e+0
Identity = 533/533 (100.00%), Postives = 533/533 (100.00%), Query Frame = 0
Query:    1 MALPTLETIKGMKVAELKKELEKLDLSVKGLKADLMQRLMQHVEKAAAAEEGGSDDVDGLNDKPEPQDETLKPSVKAIVEEELVGTASKGPSGSSREKEQEGEVMAEAAPSAVHPSPSPAPANPSELEHNPDRGIEKEKPSHLTSPAEASAAPQAAEPSEIGSSLRQVADALPSSPSSATVPSESAQSSDMAAAVTQKGHASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAPPHLGGAESGGSVRRKRELGPSPERIVRARRDAEGAKEAVKEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARKRERLKELKAEAKLEAKKREAAGGVRQPAADRRWAGRDGGGGGGYRSRNRSPPRRRW 533
            MALPTLETIKGMKVAELKKELEKLDLSVKGLKADLMQRLMQHVEKAAAAEEGGSDDVDGLNDKPEPQDETLKPSVKAIVEEELVGTASKGPSGSSREKEQEGEVMAEAAPSAVHPSPSPAPANPSELEHNPDRGIEKEKPSHLTSPAEASAAPQAAEPSEIGSSLRQVADALPSSPSSATVPSESAQSSDMAAAVTQKGHASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAPPHLGGAESGGSVRRKRELGPSPERIVRARRDAEGAKEAVKEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARKRERLKELKAEAKLEAKKREAAGGVRQPAADRRWAGRDGGGGGGYRSRNRSPPRRRW
Sbjct:    1 MALPTLETIKGMKVAELKKELEKLDLSVKGLKADLMQRLMQHVEKAAAAEEGGSDDVDGLNDKPEPQDETLKPSVKAIVEEELVGTASKGPSGSSREKEQEGEVMAEAAPSAVHPSPSPAPANPSELEHNPDRGIEKEKPSHLTSPAEASAAPQAAEPSEIGSSLRQVADALPSSPSSATVPSESAQSSDMAAAVTQKGHASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAPPHLGGAESGGSVRRKRELGPSPERIVRARRDAEGAKEAVKEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARKRERLKELKAEAKLEAKKREAAGGVRQPAADRRWAGRDGGGGGGYRSRNRSPPRRRW 533          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|553181676|ref|XP_005853605.1| (apoptotic chromatin condensation inducer in the nucleus, partial [Nannochloropsis gaditana CCMP526] >gi|422295454|gb|EKU22753.1| apoptotic chromatin condensation inducer in the nucleus, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 368/370 (99.46%), Postives = 368/370 (99.46%), Query Frame = 0
Query:    1 MALPTLETIKGMKVAELKKELEKLDLSVKGLKADLMQRLMQHVEKAAAAEEGGSDDVDGLNDKPEPQDETLKPSVKAIVEEELVGTASKGPSGSSREKEQEGEVMAEAAPSAVHPSPSPAPANPSELEHNPDRGIEKEKPSHLTSPAEASAAPQAAEPSEIGSSLRQVADALPSSPSSATVPSESAQSSDMAAAVTQKGHASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATP 370
            MALPTLETIKGMKVAELKKELEKLDL VKGLKADLMQRLMQHVEKAAAAEEGGSDDVDGLNDKPEPQDETLKPSVKAIVEEELVGTASKGPSGSSREKEQEGEVMAEAAPSAVHPSPSPAPANPSELEHNPDRGIEKEKPSHLTSPAEASAAPQAAEPSEIGSSLRQVADALPSSPSSATVPSESAQSSDMAAAVTQKG ASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATP
Sbjct:    1 MALPTLETIKGMKVAELKKELEKLDLPVKGLKADLMQRLMQHVEKAAAAEEGGSDDVDGLNDKPEPQDETLKPSVKAIVEEELVGTASKGPSGSSREKEQEGEVMAEAAPSAVHPSPSPAPANPSELEHNPDRGIEKEKPSHLTSPAEASAAPQAAEPSEIGSSLRQVADALPSSPSSATVPSESAQSSDMAAAVTQKGRASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATP 370          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|298710395|emb|CBJ25459.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.3673 bits (246), Expect = 2.991e-18
Identity = 82/257 (31.91%), Postives = 122/257 (47.47%), Query Frame = 0
Query:  251 TIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGV-LTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDK--------------------TGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAPPHLGGAESGGSVRRKRELGPSPE-RIVRARRDAEGAKEAVKE--EEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARKRERLKE 483
            TIRVD F+RPF    AK++LEE+   P++ E G WMD IKTHCYATF  +E A RA  AL   QWP +    L A     +A    EE +    ++ ++R   G D+                     GG   G    AT  ++A+A  S    R   S+  P          G A S G V     L  + E  + R+R    G  +  ++  EE+ +P +  L+++FR T   P LYW P+ E++V  ++++++E
Sbjct:  366 TIRVDNFVRPFTAQQAKKLLEEKAEAPVM-EGGFWMDGIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATLGDMSA----EEARARDGSKRSNRPFPGMDRPARVLGPRVTPTAEAKSSPEGGGQANGSGAHATDESSAVAGGSTARVRGRGSVQAP----------GVAGSRGGV-----LAANVEAEVGRSRGQDRGGLQQPQQGPEEEAEPII--LDDMFRKTDAKPSLYWLPLSEEEVGLRKKKMEE 600          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|1201314987|gb|OVA14662.1| (SAP domain [Macleaya cordata])

HSP 1 Score: 96.2857 bits (238), Expect = 2.872e-17
Identity = 78/255 (30.59%), Postives = 113/255 (44.31%), Query Frame = 0
Query:  229 SGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGG-VLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAPP----HLGGAESGGSVRRKRELGPSPERIVRARRDAEGAKEAVKEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARKR 478
            SGADAP+    +VP    P + ++R+D F+RPF L A +E+L + G          WMD IKTHCY T+ S E A   R AL+  QWP  GG +L A+F           D    K RA     E   ++  ARP  P++A+P T +                  P+PF++ P    H+   +             S     R R           +       + TL++LF+ T   P++Y+ P+ E+QVA KR
Sbjct:  516 SGADAPK--ERVVPPSSKPPTNSLRIDRFLRPFTLKAVQELLAKTGTVS-----SFWMDHIKTHCYVTYSSVEEAKETRNALYNLQWPANGGRLLVAEFV----------DPQEVKMRA-----EAPPQSPAARP--PVSASPTTPS-----------------APSPFQSKPSPRQHVLREQLPPPPPLPPPPPLSNPPPARERLPLPPPPPLPSK---PDLPILTLDDLFKKTKAIPRIYYLPLSEEQVAAKR 726          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|1179554947|ref|XP_020697677.1| (actin cytoskeleton-regulatory complex protein PAN1 [Dendrobium catenatum])

HSP 1 Score: 95.1301 bits (235), Expect = 6.769e-17
Identity = 56/153 (36.60%), Postives = 81/153 (52.94%), Query Frame = 0
Query:  175 SPSSATVPSESAQSSDMAAAVTQKGHASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGG-VLTADF 326
            +P +  VP +  Q   +  A+T K +A P P     ++  G S + L         AD+P+    +VP PK P + ++R+D F+RPF L A +E+L + G          WMD IKTHCY T+ S E AA  R A++  QWP  GG +L A+F
Sbjct:  590 NPETIKVPEQ--QIPHLNIAMTPKNNAQPTP-----RRTFGRSNSTL--------SADSPK--ERVVPTPKKPATTSLRIDNFLRPFTLKAVQELLAQTGNVC-----DFWMDHIKTHCYVTYSSVEEAAETRKAVYNIQWPPNGGRLLAAEF 720          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|743892142|ref|XP_011039562.1| (PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like [Populus euphratica])

HSP 1 Score: 94.7449 bits (234), Expect = 8.851e-17
Identity = 90/308 (29.22%), Postives = 135/308 (43.83%), Query Frame = 0
Query:  178 SATVPSESAQSSDMAAAVTQKGHASPAPIDAEVKKGTGPSETALLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGG-VLTADF-SPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAPPHLGGAESGGSVRRKRELGPSPERIVRARRDAEGAKEAV------KEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARK 477
            S  VP +  QSS++    T K    PAP+                +R +S  G +AP+    +VP  + P + ++R+D F+RPF L A +E+L + G          WMD IKTHCY  + S E A   R  ++  QWP  GG +L A+F  P+             K R  +             P + LAA P T ++AA +         L P P+P +             V R++   P+   +  A  +   A+E V         E   P + TL++LFR T T P++Y+ P+ E+QVA K
Sbjct:  437 SIKVPEQ--QSSNLTPTTTPKDGFQPAPLRRN------------FSRSDSSVGEEAPK--ERIVPPSQKPPTNSLRIDRFLRPFTLKAVQELLGKTGSVT-----SFWMDHIKTHCYVMYSSVEEAVETRNTIYNLQWPPNGGRLLVAEFVDPQEV-----------KIRVDA-------------PPQSLAA-PVTPSMAAPAPAPAPAPPMLQPQPSPRQ------------QVSRQQLPPPTSLPLPPALSNPPHARERVDLPPPPPLPEKHDPPIVTLDDLFRKTKTAPRIYYLPLSEEQVAAK 686          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|326526753|dbj|BAK00765.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 91.2781 bits (225), Expect = 1.108e-15
Identity = 76/263 (28.90%), Postives = 115/263 (43.73%), Query Frame = 0
Query:  222 LAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQW-PERGGVLTADFSPKTAAQVTEEDKLLKKARAASRL------QEGGDKTGGARPGEPL--AATPRTTALAAASAETQRVSNSLVPPPAPFEAPPHLGGAESGGSVRRKRELGPSPERIVRARRDAEGAKEAVKEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVA 475
            L R +S +  D+P+    +VP  + P + ++R+D F+RPF L A +E+L + G          WMD IKTHCY TF S E A   R A++  QW P  G  L A+F      ++  E        AA  +      +E   + G A    P   AATPR      A       S+     PA              GS R K  L P+P++                     +P + TL++LFR T + P++Y+ P+ +++V+
Sbjct:  516 LGRADSTASGDSPK--ERIVPPSQKPATTSLRIDRFVRPFTLRAVQELLGKTGSVC-----SFWMDHIKTHCYVTFSSVEEATATRDAVYNLQWPPNNGNYLLAEFVDPQEVKLKLEPPAPAATAAAVPISPATTPREAPFQQGQANQSVPCQAAATPREQLPPPAPLVKPPTSD-----PA--------------GSAREK--LPPTPKKA--------------------EPPVVTLDDLFRKTQSSPRIYYLPLSDEEVS 730          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|734400274|gb|KHN31348.1| (Apoptotic chromatin condensation inducer in the nucleus [Glycine soja])

HSP 1 Score: 90.5077 bits (223), Expect = 1.749e-15
Identity = 82/275 (29.82%), Postives = 114/275 (41.45%), Query Frame = 0
Query:  222 LAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGGVLTADFSPKTAAQVTEEDKLLKKARAASRLQEGGDKTGGARPGEPLAATPRTTALAAASAETQRVSNSLVPPPAPFEAP---PHLGGAESGGSVRRK------------RELGPS----PERIVRARRDAEGAKEAVKEEEDEKPAMPTLEELFRSTSTPPKLYWTPVPEDQVARK 477
             +R +S +  D P+    +VP P+   + ++R+D F+RPF L A +E+L + G          WMD IKTHCY T+ S + A   R A++  QWP  GG L        A  V  E+  +K                     EP    P T    AAS  T R     VPP  PF  P   PHL   +    V               RE  PS    PE++                     P + TL++LFR T+  P++Y+ P+ E+QVA K
Sbjct:  489 FSRSDSSATDDTPK--ERIVPPPQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVS-----SFWMDQIKTHCYVTYSSVDEAIETRNAVYNLQWPPNGGRLLV------AEYVDPEEVKMKL--------------------EP----PPT---QAASDSTDRA----VPPAPPFSQPEPSPHLHREQHPVPVILPPPPPLSKPPPVARERLPSPPPLPEKV--------------------DPPIVTLDDLFRKTTATPRIYYLPLSEEQVASK 699          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|586668990|ref|XP_006836186.1| (apoptotic chromatin condensation inducer in the nucleus [Amborella trichopoda] >gi|548838686|gb|ERM99039.1| hypothetical protein AMTR_s00101p00067890 [Amborella trichopoda])

HSP 1 Score: 89.7373 bits (221), Expect = 3.106e-15
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 0
Query:  221 LLAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQWPERGG-VLTADF 326
            LL+R +S    DAP+    +VP P+   + ++R+D F+RPF L A +E+L + G          WMD IKTHCY T+ S E A   R AL+  QWP  GG +LTA+F
Sbjct:  465 LLSRSDSSVSEDAPK--ERVVPPPQRSPTTSLRIDRFLRPFTLKAVQELLAKTGTFC-----SFWMDHIKTHCYVTYSSVEEAVETRNALYNLQWPPNGGRLLTAEF 564          
BLAST of EWM21349.1 vs. NCBI_GenBank
Match: gi|1002849632|ref|XP_015690989.1| (PREDICTED: fibrous sheath CABYR-binding protein-like isoform X1 [Oryza brachyantha] >gi|1002849634|ref|XP_015690990.1| PREDICTED: fibrous sheath CABYR-binding protein-like isoform X1 [Oryza brachyantha] >gi|1002849636|ref|XP_015690991.1| PREDICTED: fibrous sheath CABYR-binding protein-like isoform X1 [Oryza brachyantha])

HSP 1 Score: 87.4261 bits (215), Expect = 1.919e-14
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 0
Query:  222 LAREESLSGADAPEPAAALVPAPKNPRSATIRVDGFIRPFRLVAAKEMLEERGGGPLVGEDGMWMDVIKTHCYATFQSEECAARARIALHKYQW-PERGGVLTADF 326
              R +S +  D+P+    +VP P+NP + ++R+D F+RPF L A +E+L + G          WMD IKTHCY T+ S E A   R A++  QW P  G  L A+F
Sbjct:  484 FGRSDSTASEDSPK--ERVVPPPQNPATTSLRIDRFVRPFTLKAVQELLGKTGSVC-----SFWMDHIKTHCYVTYSSLEEAVATRDAVYNLQWPPNNGNRLVAEF 582          
The following BLAST results are available for this feature:
BLAST of EWM21349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101534|gb|EWM21349.1|0.000e+0100.00DNA-binding SAP [Nannochloropsis gaditana][more]
gi|553181676|ref|XP_005853605.1|0.000e+099.46apoptotic chromatin condensation inducer in the nu... [more]
gi|298710395|emb|CBJ25459.1|2.991e-1831.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|1201314987|gb|OVA14662.1|2.872e-1730.59SAP domain [Macleaya cordata][more]
gi|1179554947|ref|XP_020697677.1|6.769e-1736.60actin cytoskeleton-regulatory complex protein PAN1... [more]
gi|743892142|ref|XP_011039562.1|8.851e-1729.22PREDICTED: apoptotic chromatin condensation induce... [more]
gi|326526753|dbj|BAK00765.1|1.108e-1528.90predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|734400274|gb|KHN31348.1|1.749e-1529.82Apoptotic chromatin condensation inducer in the nu... [more]
gi|586668990|ref|XP_006836186.1|3.106e-1542.99apoptotic chromatin condensation inducer in the nu... [more]
gi|1002849632|ref|XP_015690989.1|1.919e-1439.62PREDICTED: fibrous sheath CABYR-binding protein-li... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9364rna9364Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications