rna9359, rna9359 (mRNA) Nannochloropsis gaditana

Overview
Namerna9359
Unique Namerna9359
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length225
Alignment locationKK037253.1:53643..55186 -

Link to JBrowse

Properties
Property NameValue
Productendonuclease
Orig transcript idgnl|cribi|Naga_100075g17.2874.mrna
Orig protein idgnl|cribi|Naga_100075g17.2874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:53643..55186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100075g17gene9076Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9359rna9359-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21340.1cds9329Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9359 ID=rna9359|Name=rna9359|organism=Nannochloropsis gaditana|type=mRNA|length=225bp
ATGGGGAACGGAAGCGAATGGAAGGTGTGTACAGCGCTTATAAGTGTATG
CATGCATGTAAGAACAGATGGCGTAGCGTATGGCTATGAGGGGAGGAGTA
CGAGTCGGAGGGAAAAAGCACGAGGGTTTGACGTGTACTTGTATCCTTTT
GGGGAGGGCATAAAGAAGGAAAAAGAGCAACTGCAGCTTCGACTTGTACG
CGATGAACTAGTTCGCGAGCAATGA
back to top

protein sequence of rna9359

>rna9359-protein ID=rna9359-protein|Name=rna9359|organism=Nannochloropsis gaditana|type=polypeptide|length=491bp
MLSALPQQNLNIPTLSQYFRKRGRRMLLQGLRQYCSRGSHACGKRRRPCV
VNRAQCSSAPRDELVHLLGPASGLSSCQWSNDEPREAMLPQPQYEGDWEI
QAEEEDQQERIGAKDREGEDEGEEGGVFGGGQTPHRPGAFATDHATPAAS
RRSGADSYKESYQDEYWERPGIVQATSRCPALVLNQDLTPLTLFPLTIAP
WWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQA
GALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCC
FCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELG
RIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYLEGPLAREAAKVS
ALHATFSLPTPHPTPPSFSKSGAQSAPGGSHTPCSVADDGPRPRNLVDVS
PLPRTEARKEQCQPRMKTEEGGEDGGYGLSAPRGPLAWSTH
back to top

mRNA from alignment at KK037253.1:53643..55186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9359 ID=rna9359|Name=rna9359|organism=Nannochloropsis gaditana|type=mRNA|length=1544bp|location=Sequence derived from alignment at KK037253.1:53643..55186- (Nannochloropsis gaditana)
ATGTTGTCAGCCCTCCCTCAACAGAACTTGAATATTCCTACACTTTCTCA
GTACTTCAGAAAAAGGGGACGGCGAATGCTTTTGCAGGGCTTGCGGCAAT
ATTGTTCTCGCGGTAGTCACGCTTGTGGAAAGCGACGACGCCCTTGTGTT
GTCAATCGCGCGCAATGCTCTAGCGCTCCTCGAGACGAGCTAGTCCATCT
CCTCGGCCCGGCGTCAGGACTTTCCTCTTGCCAGTGGAGCAATGATGAGC
CCCGCGAGGCAATGCTTCCACAGCCCCAGTACGAAGGCGACTGGGAGATC
CAGGCGGAGGAGGAGGATCAGCAGGAAAGAATCGGGGCCAAGGATCGGGA
AGGGGAGGATGAAGGTGAGGAGGGAGGTGTCTTCGGAGGGGGGCAGACTC
CGCACCGTCCAGGAGCCTTTGCTACCGACCACGCCACCCCAGCAGCCTCT
CGTAGGAGCGGAGCTGACTCTTACAAGGAGAGCTATCAGGACGAATACTG
GGAGCGGCCCGGCATTGTCCAGGCCACCTCCCGCTGCCCCGCCCTGGTGC
TGAACCAGGACCTGACCCCCCTGACGCTCTTCCCCCTCACCATCGCCCCC
TGGTGGTCGGCCGTGCGCAGCACTCTGCGAGGCCGGGTCTCGGTCCTGTC
CAGCTATGACCGCGGGGTCCGGTCGACCCACGCCTTGCACCAACTGCCCT
CTGTGGTGGCCTTGACGCGGCAGCAGACTCCCGGCCAGCGGCGACAGGCG
GGGGCGCTGGAAGGGCGGGAGGGCGAGGCAGGGTGCAAGGCCGGGGGGGG
GCGAGGTGAAGGGGACGGCGAGCGGAGATTTTGGCCCGCCGCCAGGACCC
CGCGGCCCTTTCGCCGCAACGTGGCGCTGCGGGACGGCTACGTTTGCTGC
TTCTGCGGGCGCCGCCTCAGCTACCGGACCCTGACGCTCGACCACGTGGT
CCCCCGCTGCCTCGGGGGCGAGGACAGTTGGGAGAATCTGGCCTCCGCCT
GCCGGCAGTGCAACAGTCGCAAGGGGTCTCTGCTCGTCTCAGAGCTCGGG
AGGATCGACATGCGCCTGCTGCGGGTCCCCTACGCGCCAACGGCCCTCCA
GGTAAGCGGGCTGGGCCACTGTGCGCCTTGGACTCTCCACCCATCCGTCC
CACCCCCGTGTCCCCACAGCTGGCCTACGCCTACGTCGACCTCCTGCCCG
CCGCTATCCTCAACCAGTGGGGCCGCTACCTGGAAGGGCCTTTGGCCCGC
GAGGCGGCCAAAGTGAGCGCCCTCCATGCCACCTTCTCCCTTCCCACCCC
CCACCCCACCCCTCCCTCTTTTTCCAAATCCGGGGCCCAGAGTGCGCCGG
GAGGCTCCCACACCCCTTGCTCAGTGGCCGACGACGGCCCAAGGCCCCGC
AATCTCGTGGACGTCTCTCCCCTGCCAAGGACAGAAGCGCGCAAGGAGCA
ATGCCAGCCCCGGATGAAGACGGAAGAGGGGGGCGAGGACGGTGGCTACG
GGTTGTCTGCCCCCCGGGGGCCTCTGGCCTGGTCAACGCATTAA
back to top

Coding sequence (CDS) from alignment at KK037253.1:53643..55186-

>rna9359 ID=rna9359|Name=rna9359|organism=Nannochloropsis gaditana|type=CDS|length=2952bp|location=Sequence derived from alignment at KK037253.1:53643..55186- (Nannochloropsis gaditana)
CTGGCCTACGCCTACGTCGACCTCCTGCCCGCCGCTATCCTCAACCAGTG
GGGCCGCTACCTGGAAGGGCCTTTGGCCCGCGAGGCGGCCAAAGTGAGCG
CCCTCCATGCCACCTTCTCCCTTCCCACCCCCCACCCCACCCCTCCCTCT
TTTTCCAAATCCGGGGCCCAGAGTGCGCCGGGAGGCTCCCACACCCCTTG
CTCAGTGGCCGACGACGGCCCAAGGCCCCGCAATCTCGTGGACGTCTCTC
CCCTGCCAAGGACAGAAGCGCGCAAGGAGCAATGCCAGCCCCGGATGAAG
ACGGAAGAGGGGGGCGAGGACGGTGGCTACGGGTTGTCTGCCCCCCGGGG
GCCTCTGGCCTGGTCAACGCATTAAATGTTGTCAGCCCTCCCTCAACAGA
ACTTGAATATTCCTACACTTTCTCAGTACTTCAGAAAAAGGGGACGGCGA
ATGCTTTTGCAGGGCTTGCGGCAATATTGTTCTCGCGGTAGTCACGCTTG
TGGAAAGCGACGACGCCCTTGTGTTGTCAATCGCGCGCAATGCTCTAGCG
CTCCTCGAGACGAGCTAGTCCATCTCCTCGGCCCGGCGTCAGGACTTTCC
TCTTGCCAGTGGAGCAATGATGAGCCCCGCGAGGCAATGCTTCCACAGCC
CCAGTACGAAGGCGACTGGGAGATCCAGGCGGAGGAGGAGGATCAGCAGG
AAAGAATCGGGGCCAAGGATCGGGAAGGGGAGGATGAAGGTGAGGAGGGA
GGTGTCTTCGGAGGGGGGCAGACTCCGCACCGTCCAGGAGCCTTTGCTAC
CGACCACGCCACCCCAGCAGCCTCTCGTAGGAGCGGAGCTGACTCTTACA
AGGAGAGCTATCAGGACGAATACTGGGAGCGGCCCGGCATTGTCCAGGCC
ACCTCCCGCTGCCCCGCCCTGGTGCTGAACCAGGACCTGACCCCCCTGAC
GCTCTTCCCCCTCACCATCGCCCCCTGGTGGTCGGCCGTGCGCAGCACTC
TGCGAGGCCGGGTCTCGGTCCTGTCCAGCTATGACCGCGGGGTCCGGTCG
ACCCACGCCTTGCACCAACTGCCCTCTGTGGTGGCCTTGACGCGGCAGCA
GACTCCCGGCCAGCGGCGACAGGCGGGGGCGCTGGAAGGGCGGGAGGGCG
AGGCAGGGTGCAAGGCCGGGGGGGGGCGAGGTGAAGGGGACGGCGAGCGG
AGATTTTGGCCCGCCGCCAGGACCCCGCGGCCCTTTCGCCGCAACGTGGC
GCTGCGGGACGGCTACGTTTGCTGCTTCTGCGGGCGCCGCCTCAGCTACC
GGACCCTGACGCTCGACCACGTGGTCCCCCGCTGCCTCGGGGGCGAGGAC
AGTTGGGAGAATCTGGCCTCCGCCTGCCGGCAGTGCAACAGTCGCAAGGG
GTCTCTGCTCGTCTCAGAGCTCGGGAGGATCGACATGCGCCTGCTGCGGG
TCCCCTACGCGCCAACGGCCCTCCAGCTGGCCTACGCCTACGTCGACCTC
CTGCCCGCCGCTATCCTCAACCAGTGGGGCCGCTACCTGGAAGGGCCTTT
GGCCCGCGAGGCGGCCAAAGTGAGCGCCCTCCATGCCACCTTCTCCCTTC
CCACCCCCCACCCCACCCCTCCCTCTTTTTCCAAATCCGGGGCCCAGAGT
GCGCCGGGAGGCTCCCACACCCCTTGCTCAGTGGCCGACGACGGCCCAAG
GCCCCGCAATCTCGTGGACGTCTCTCCCCTGCCAAGGACAGAAGCGCGCA
AGGAGCAATGCCAGCCCCGGATGAAGACGGAAGAGGGGGGCGAGGACGGT
GGCTACGGGTTGTCTGCCCCCCGGGGGCCTCTGGCCTGGTCAACGCATTA
AATGTTGTCAGCCCTCCCTCAACAGAACTTGAATATTCCTACACTTTCTC
AGTACTTCAGAAAAAGGGGACGGCGAATGCTTTTGCAGGGCTTGCGGCAA
TATTGTTCTCGCGGTAGTCACGCTTGTGGAAAGCGACGACGCCCTTGTGT
TGTCAATCGCGCGCAATGCTCTAGCGCTCCTCGAGACGAGCTAGTCCATC
TCCTCGGCCCGGCGTCAGGACTTTCCTCTTGCCAGTGGAGCAATGATGAG
CCCCGCGAGGCAATGCTTCCACAGCCCCAGTACGAAGGCGACTGGGAGAT
CCAGGCGGAGGAGGAGGATCAGCAGGAAAGAATCGGGGCCAAGGATCGGG
AAGGGGAGGATGAAGGTGAGGAGGGAGGTGTCTTCGGAGGGGGGCAGACT
CCGCACCGTCCAGGAGCCTTTGCTACCGACCACGCCACCCCAGCAGCCTC
TCGTAGGAGCGGAGCTGACTCTTACAAGGAGAGCTATCAGGACGAATACT
GGGAGCGGCCCGGCATTGTCCAGGCCACCTCCCGCTGCCCCGCCCTGGTG
CTGAACCAGGACCTGACCCCCCTGACGCTCTTCCCCCTCACCATCGCCCC
CTGGTGGTCGGCCGTGCGCAGCACTCTGCGAGGCCGGGTCTCGGTCCTGT
CCAGCTATGACCGCGGGGTCCGGTCGACCCACGCCTTGCACCAACTGCCC
TCTGTGGTGGCCTTGACGCGGCAGCAGACTCCCGGCCAGCGGCGACAGGC
GGGGGCGCTGGAAGGGCGGGAGGGCGAGGCAGGGTGCAAGGCCGGGGGGG
GGCGAGGTGAAGGGGACGGCGAGCGGAGATTTTGGCCCGCCGCCAGGACC
CCGCGGCCCTTTCGCCGCAACGTGGCGCTGCGGGACGGCTACGTTTGCTG
CTTCTGCGGGCGCCGCCTCAGCTACCGGACCCTGACGCTCGACCACGTGG
TCCCCCGCTGCCTCGGGGGCGAGGACAGTTGGGAGAATCTGGCCTCCGCC
TGCCGGCAGTGCAACAGTCGCAAGGGGTCTCTGCTCGTCTCAGAGCTCGG
GAGGATCGACATGCGCCTGCTGCGGGTCCCCTACGCGCCAACGGCCCTCC
AG
back to top
Synonyms
Publications