EWM21340.1, cds9329 (CDS) Nannochloropsis gaditana

Overview
NameEWM21340.1
Unique Namecds9329
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:54086..55186 -
Alignment locationKK037253.1:53643..54017 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21340.1
Productendonuclease
Orig transcript idgnl|cribi|Naga_100075g17.2874.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:54086..55186 -
KK037253.1supercontigKK037253.1:53643..54017 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004519endonuclease activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR002711HNH
IPR003615HNH_nuc
Homology
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|585101525|gb|EWM21340.1| (endonuclease [Nannochloropsis gaditana])

HSP 1 Score: 997.653 bits (2578), Expect = 0.000e+0
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0
Query:    1 MLSALPQQNLNIPTLSQYFRKRGRRMLLQGLRQYCSRGSHACGKRRRPCVVNRAQCSSAPRDELVHLLGPASGLSSCQWSNDEPREAMLPQPQYEGDWEIQAEEEDQQERIGAKDREGEDEGEEGGVFGGGQTPHRPGAFATDHATPAASRRSGADSYKESYQDEYWERPGIVQATSRCPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYLEGPLAREAAKVSALHATFSLPTPHPTPPSFSKSGAQSAPGGSHTPCSVADDGPRPRNLVDVSPLPRTEARKEQCQPRMKTEEGGEDGGYGLSAPRGPLAWSTH 491
            MLSALPQQNLNIPTLSQYFRKRGRRMLLQGLRQYCSRGSHACGKRRRPCVVNRAQCSSAPRDELVHLLGPASGLSSCQWSNDEPREAMLPQPQYEGDWEIQAEEEDQQERIGAKDREGEDEGEEGGVFGGGQTPHRPGAFATDHATPAASRRSGADSYKESYQDEYWERPGIVQATSRCPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYLEGPLAREAAKVSALHATFSLPTPHPTPPSFSKSGAQSAPGGSHTPCSVADDGPRPRNLVDVSPLPRTEARKEQCQPRMKTEEGGEDGGYGLSAPRGPLAWSTH
Sbjct:    1 MLSALPQQNLNIPTLSQYFRKRGRRMLLQGLRQYCSRGSHACGKRRRPCVVNRAQCSSAPRDELVHLLGPASGLSSCQWSNDEPREAMLPQPQYEGDWEIQAEEEDQQERIGAKDREGEDEGEEGGVFGGGQTPHRPGAFATDHATPAASRRSGADSYKESYQDEYWERPGIVQATSRCPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYLEGPLAREAAKVSALHATFSLPTPHPTPPSFSKSGAQSAPGGSHTPCSVADDGPRPRNLVDVSPLPRTEARKEQCQPRMKTEEGGEDGGYGLSAPRGPLAWSTH 491          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|546323611|ref|XP_005718133.1| (unnamed protein product [Chondrus crispus] >gi|507114712|emb|CDF38248.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 140.198 bits (352), Expect = 1.993e-34
Identity = 78/211 (36.97%), Postives = 113/211 (53.55%), Query Frame = 0
Query:  179 CPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQ-WGRYL 388
            CPALVLN D +PL+  PL++ PW  A+++    RV+V+++YD GVRS   +  LPSV++L + Q   ++R A +                                   R NV +RD + C +CGRR   + LT DHV+PRC GG+ +W+N+ +AC  CN  KG  L+ EL    M+LLR+P+ PT  QL  A   L P   L++ W  Y+
Sbjct:   94 CPALVLNADFSPLSYMPLSLWPWQDAIKAVFLDRVTVVATYDIGVRSPGMIFPLPSVISLKQYQPRARKRPAFS-----------------------------------RFNVFMRDAFSCQYCGRRFPTQELTFDHVIPRCAGGKTNWQNVVTACIGCNHSKGRYLLHELK--HMKLLRMPHEPTNGQLQ-ARARLFPPRYLHESWRDYV 266          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|1180179804|ref|WP_083699156.1| (HNH endonuclease [Rhodocista sp. MIMtkB3])

HSP 1 Score: 133.65 bits (335), Expect = 1.017e-32
Identity = 77/210 (36.67%), Postives = 105/210 (50.00%), Query Frame = 0
Query:  179 CPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYL 388
            CPALVLN D  PL+ FPL++  W  AV++    RV+++S YDR VRS +A  +LPSV++L                                    + + PA R P   R NV LRD + C +CGR    + LT DHV+PRC GG  SWEN+ ++C  CN  KGS L ++ G   M  L+ P+ PTA +L        P  +   W  +L
Sbjct:   35 CPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVNIISVYDRTVRSPNAEIRLPSVISL------------------------------------KEYIPATRKPAFTRFNVFLRDSFTCQYCGRSFPTQELTFDHVIPRCRGGRTSWENVVTSCSACNLLKGSRLPNQCG---MHPLQPPFQPTAYELQENGRSFPPNFLHESWRDFL 205          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|1176545111|ref|WP_082372102.1| (hypothetical protein [alpha proteobacterium AAP38])

HSP 1 Score: 131.724 bits (330), Expect = 2.218e-31
Identity = 75/210 (35.71%), Postives = 105/210 (50.00%), Query Frame = 0
Query:  179 CPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYL 388
            CPALVLN D  PL+ FPL++  W  AV++    RV+++S YDR VRS     +LPSV++L                                    + + PA R P   R NV LRD + C +CGR      LT DHV+PRC GG  SW+N+ ++C  CN  KGS L ++ G   M  ++ P+APTA +L     +  P  + + W  +L
Sbjct:   67 CPALVLNADFRPLSYFPLSLWSWQDAVKAVFLDRVNIVSHYDRVVRSPQLAIRLPSVISL------------------------------------KEYVPATRRPAFTRFNVFLRDRFTCQYCGRWFPTHELTFDHVIPRCRGGRTSWDNVVTSCSACNLVKGSRLPNQCG---MHPMQEPFAPTAYELQENGRNFPPTFLHDSWRDFL 237          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|585110977|gb|EWM28559.1| (hnh endonuclease [Nannochloropsis gaditana])

HSP 1 Score: 135.576 bits (340), Expect = 2.799e-31
Identity = 84/223 (37.67%), Postives = 108/223 (48.43%), Query Frame = 0
Query:  172 IVQATSRCPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQL---AYAYVDLLPAAILNQWGRYLEGP 391
            +++ T + P LVLN D  PL+  PL+I  W  A+++    RV+VL+ YD  ++ST    QLPSVV L + Q                  GC+                  R P   RRN+ +RD Y C +C +RLS   LTLDHV+PR  GG+ SW+NL + CRQCN RKG   V EL  I M LL  P  P   +L   A  Y           W  YL GP
Sbjct:  264 LLRQTGKYPVLVLNTDAQPLSYLPLSIIRWQEAIKAIFLERVTVLAYYDSYIQSTAGPWQLPSVVCLKQYQ-----------------KGCRE-----------------RPPPLNRRNIYIRDRYSCAYCSQRLSAHDLTLDHVMPRSKGGKGSWDNLVTCCRQCNRRKGKRTVKELKEIGMVLLNPPRKPKMSELQRQARLYRTAAGVFPHESWETYLGGP 452          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|545714109|ref|XP_005709357.1| (HNH endonuclease family protein [Galdieria sulphuraria] >gi|452825842|gb|EME32837.1| HNH endonuclease family protein [Galdieria sulphuraria])

HSP 1 Score: 130.183 bits (326), Expect = 1.556e-30
Identity = 76/212 (35.85%), Postives = 102/212 (48.11%), Query Frame = 0
Query:  180 PALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYLEGP 391
            P LVLN D  P++ +PL++ PW+  +++ L  +V VL +Y++ +RS     +LPSVVAL        RR  G                              R P   R NV LRD + C +CG+R     L+ DH+VPR  GG   W N+ +AC QCN +KG+ LV E    DMRLLR P +PT  +L      L P      W  YL  P
Sbjct:  129 PTLVLNADFQPVSYYPLSLWPWYETIKAVLLEKVVVLETYEKTIRSPSLSLKLPSVVALKEF-----RRMTG------------------------------RQPIFTRFNVFLRDDFACQYCGKRYRSVDLSFDHIVPRSKGGHSCWTNVVTACFQCNFKKGNRLVEETK--DMRLLRYPRSPTFYELQVKAQKLSPKISHTTWNAYLMLP 303          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|972370024|ref|WP_059024320.1| (HNH endonuclease [Acetobacter ghanensis] >gi|971146139|emb|CEF57010.1| HNH endonuclease [Acetobacter ghanensis])

HSP 1 Score: 125.561 bits (314), Expect = 4.239e-30
Identity = 79/214 (36.92%), Postives = 102/214 (47.66%), Query Frame = 0
Query:  175 ATSRCPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYL 388
            +T   PALVLN D  PL+ FPL++ PW  A+++    RVSVLS YD  V S +   +LPSV+AL                                    + + PAAR P   R NV LRD + C +CG R   + LT DHV+PRC GG  SWEN+ +AC  CN RKG  +   +G   M   R P  PT+ +L        P  +   W  YL
Sbjct:    5 STLNYPALVLNADFRPLSYFPLSLWPWQDAIKAVCLDRVSVLSEYDMEVHSPNQAFRLPSVIAL------------------------------------KDYVPAARKPAFTRFNVFLRDNFSCQYCGERHPTQELTFDHVIPRCKGGRTSWENVVTACGCCNLRKGPHMPHHIG---MLPRRTPVRPTSWELQENGRAFPPNYLHKSWRDYL 179          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|889828012|ref|WP_048854330.1| (HNH endonuclease [Acetobacter syzygii] >gi|775231041|dbj|GAN71655.1| endonuclease [Acetobacter syzygii 9H-2])

HSP 1 Score: 125.176 bits (313), Expect = 5.814e-30
Identity = 78/214 (36.45%), Postives = 103/214 (48.13%), Query Frame = 0
Query:  175 ATSRCPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYL 388
            +T   PALVLN D  PL+ FPL++ PW  A+++    RVSVLS YD  V S +   +LPSV+AL                                    + + PAAR P   R NV LRD + C +CG++   + LT DHV+PRC GG  SWEN+ +AC  CN RKG  +   +G   M   R P  PT+ +L        P  +   W  YL
Sbjct:    5 STLNYPALVLNADFRPLSYFPLSLWPWQDAIKAVCLDRVSVLSEYDMEVHSPNQAFRLPSVIAL------------------------------------KDYIPAARKPAFTRFNVFLRDNFSCQYCGKQHPTQELTFDHVIPRCKGGRTSWENVVTACGCCNLRKGPHMPHHIG---MLPRRTPVRPTSWELQENGRAFPPNYLHKSWRDYL 179          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|1200409077|gb|OUV26490.1| (HNH endonuclease [Alphaproteobacteria bacterium TMED109])

HSP 1 Score: 124.79 bits (312), Expect = 8.225e-30
Identity = 62/209 (29.67%), Postives = 107/209 (51.20%), Query Frame = 0
Query:  180 PALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYL 388
            PAL+LN D  P++ FPL++  W  ++++    RV++++ Y+  VRS++   ++PSV+AL                                    +++ P ++ P   R N+ LRD + C +CG   +   LT DHV+P+  GG+  WEN+ +AC +CN +K  LL+SE   ++M+L++ P+ P+  QL  +     P  +   W  YL
Sbjct:    5 PALILNADYQPISYFPLSLWSWQDSIKAVFLERVNIIAEYESEVRSSNFSMKIPSVIAL------------------------------------KKYIPISKKPPFTRFNLFLRDDFSCQYCGDIFTSNDLTFDHVIPKSKGGKTKWENVVAACSKCNLKKSDLLLSE---VNMKLIKQPFTPSNQQLQVSGKKFPPNYLHKSWMDYL 174          
BLAST of EWM21340.1 vs. NCBI_GenBank
Match: gi|916936239|ref|WP_051542951.1| (HNH endonuclease [Acetobacter papayae])

HSP 1 Score: 124.02 bits (310), Expect = 2.147e-29
Identity = 79/214 (36.92%), Postives = 102/214 (47.66%), Query Frame = 0
Query:  175 ATSRCPALVLNQDLTPLTLFPLTIAPWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAGGGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYL 388
            +T   PALVLN D  PL+ FPL++  W  A+++    RVSVL+ YD  VRS     +LPSV+AL                                    + F PAAR P   R NV LRD + C +CG R   + LT DHV+PRC GG  SWEN+ +AC  CN RKG  +  ++G I     R P  PT+ +L        P  +   W  YL
Sbjct:   11 STLNFPALVLNADFRPLSYFPLSLWSWQDAIKAVCLDRVSVLNEYDVEVRSPRQTFRLPSVIAL------------------------------------KDFIPAARKPAFTRFNVFLRDNFSCQYCGERYPTQELTFDHVIPRCKGGRTSWENVVTACGCCNLRKGPHMPQKIGMIPR---RPPARPTSWELQENGRAFPPNYLHKSWCDYL 185          
The following BLAST results are available for this feature:
BLAST of EWM21340.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101525|gb|EWM21340.1|0.000e+0100.00endonuclease [Nannochloropsis gaditana][more]
gi|546323611|ref|XP_005718133.1|1.993e-3436.97unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|1180179804|ref|WP_083699156.1|1.017e-3236.67HNH endonuclease [Rhodocista sp. MIMtkB3][more]
gi|1176545111|ref|WP_082372102.1|2.218e-3135.71hypothetical protein [alpha proteobacterium AAP38][more]
gi|585110977|gb|EWM28559.1|2.799e-3137.67hnh endonuclease [Nannochloropsis gaditana][more]
gi|545714109|ref|XP_005709357.1|1.556e-3035.85HNH endonuclease family protein [Galdieria sulphur... [more]
gi|972370024|ref|WP_059024320.1|4.239e-3036.92HNH endonuclease [Acetobacter ghanensis] >gi|97114... [more]
gi|889828012|ref|WP_048854330.1|5.814e-3036.45HNH endonuclease [Acetobacter syzygii] >gi|7752310... [more]
gi|1200409077|gb|OUV26490.1|8.225e-3029.67HNH endonuclease [Alphaproteobacteria bacterium TM... [more]
gi|916936239|ref|WP_051542951.1|2.147e-2936.92HNH endonuclease [Acetobacter papayae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9359rna9359Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications