rna9357, rna9357 (mRNA) Nannochloropsis gaditana

Overview
Namerna9357
Unique Namerna9357
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2383
Alignment locationKK037253.1:52483..53479 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100075g19.2879.mrna
Orig protein idgnl|cribi|Naga_100075g19.2879
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:52483..53479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100075g19gene9074Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9357rna9357-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21345.1cds9327Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9357 ID=rna9357|Name=rna9357|organism=Nannochloropsis gaditana|type=mRNA|length=2383bp
GACTCCCACTCTCGCAAAAAACAGACGACGGACTAGAAAAGGGACCACAT
ATAACTAATGATGAATCGCACCCCGCTTTTTTGGCTGGTACTGCTCCACT
CCATTCCAAATTGCCTTCATGCCTTCGCCTCCTTCACTACACGGCTCCCG
ATGTATCAACCCTCAGGATCGATCCTTCCGGTCATGACAACCGCCGAGAC
CACGAAACTAGTAAGGCCTGAAAAGCCCTCGCGTTTGCAAACACTCGATT
ACACAACATTAGCTCTGGTGGCCTGTGAGCTAAGAGAGCGGCTTTTGCCT
GGACGAGTCGAGAATGTTATTCAGCAGGACGATTTCAGCCTGTTGCTTCA
AATGCGCTGTGTCGATGATTTTACCTGGATGCTAATTTGCTGGCAGCCAG
AAGCCGCACGCGTTTGTTTGCAGAGGAATGGACCAAACGACAGTAATAGA
AATAGCCGCGGGGACGGTCAAAGCAAACGAAGGGGAGGAGGCAATGGAGT
GTCGTCCACATTGTACAGCCTACCGGGCCAATTGAAGGGTTTTCTTCAGC
TGAAGACGCTAATAAACGTGACGCTTCCTATACCCGGGGAACGCATTATG
GTGTTTGAGTTTGCGGACCGTCTGACTGTTTCGGTTCCTACACACAAGCT
TGTTATAGAGGTCATGGGACGACGAAGCAACGTTATGCTTGTGGATGGAG
ACACCGACATTGTCCTCGCTTGTGGCTACCAAGTATCACCATTAAAATCT
GTCCGTCCTGTTTCTATCGGCCAGCGATACACTTATCCCCCACCATTGAC
CGCTCCGCTGCCTCCGCCATTGCCCGAAGATCAGGCAGACATGGAGGCAT
ACGAAAGCGAATTTATTCGGGGGATAACCCTTGTCCCATCCCATTCTTTG
CCCAAGGCCCTTATTTCTGCTTATCGAGGATTCAGCCCACAGCTTGTTGA
TGTGATGGGGTCCACAGTAGGCATTCGAAACGCAAGCACAACGCCTGTGG
GAAATCTATCCCGTGATGTGCTTGTACGCTTCTTCCGCGGCCCTGTTGTC
ATGTGGGTGCGACTCATTGTCATGCGAGACCCCAGGGTAGTAGCAACGTC
CGAATGTGGGCTCAGTTTGGACGGAAAGCGCTATACACCACTATTATTCC
ATCCTGGAAACGGGTGGCAGCCTGTGCCATCCGTGCTAAAGCTAGTGGAG
GTTTATTATACGGCTTTTCTAAAGCGACAGGAGCTGAGAGATCTGCAACG
GAGGGGACTCAACAGAGTCCAAGCCGTGCAGCACCGTTTACAGCGAACGC
GACAGGAATTTCAGCGACAGCTCGATGCTGCAGCGGAAGAAGAAGTCAGC
AAATTGCAGACTAAAGCGGAGCTGCTGACGACTTACGCCTACAGCTGGAA
ACAAGGGGATACCGAGTGTGTATGCCCAGACCTGGACACGGGGGAAGAGA
TTTGCATCCCACTGAAACCGGGAAATTCTGCGGCAGATGAAGCACAGGCT
ACTTACGGTCGTATTCGTAAATTAAAGCGAAGTGTGGATGCCATAATGCC
TTTACTGCAGAAAATTGACGTCAAGGTGGCGTATGTGGACGAGCTTGAGT
CTAGCATCCAGCAACTTGGAACCTCGGCTCGCTCAGATGAAGACACACCT
AATGTTCTAAACACTCGAACGCTTAGTCAAGATCTTGCAATCATGCGGGA
AATAGCTGAAGAGCTGGGCATAAATTGTCTTGATGGTAGAGGTGGAAGCT
CCACCACTTTTTTTTCAACAATACTGAATCGGCTTTCTGTTCCTGGAATC
GAGCAGAGTAGCCTGAGCAATTATCAAAATAGCAAAAATAACAAGAGGAA
AAAAAAGGACAAGCCTGTCAGGGATAAAAACAAGAAAATTCAAGGCAAAA
GCACAGATGGTGCTAAGAAGTGTGCACAGAGTATGGCGATCCAATCATTT
CGCCCTCCTTCTGTGCATAGTACTTCAAATGTTGTAGTGTACGTCGGTCG
CAATAGTAAGCAGAACGATTACGTGACTTTTCAACTTGCACGAGATCATG
AACTCTGGTTTCATGCTCAAGGAGTCCCTGGTGCCCACTGTTTAATGCGT
ATTGATCCAGGCGTCGAAGTAAGTGACGCAGATATGCAATTTGCAGCTGA
TTTAGCAGCTTATTTTAGCAAAGCGCGTGGATCAGGCCAAGTGCCTGTTA
TATGGACATCACCAAAATACCTCAAACGTGTAGTTGGTGGTGGACCAGGC
ATGGTTCATGTAAGCAAGGAGAAGGTCTTGTGGGGGAGACCTTCGCGAGG
CGAGAAAATTGTCCTTGAAAATGATGAGGACAATAACACTATGATATGAA
GAAAGCACCATGTCAATTTAGAAATCATTTGCA
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protein sequence of rna9357

>rna9357-protein ID=rna9357-protein|Name=rna9357|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MTCRKLNRLATQVAKLTSPLPAAYKPWGYTLAFDMMVKLAGTARLWVEEM
SDKRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPL
CKSMKVNFVRRCEGDIKAVAHLTEEQLTKINSEEKGDVLVAVEVTDSSGK
SPITAEMVWAWVPKLRKGKS
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mRNA from alignment at KK037253.1:52483..53479+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9357 ID=rna9357|Name=rna9357|organism=Nannochloropsis gaditana|type=mRNA|length=997bp|location=Sequence derived from alignment at KK037253.1:52483..53479+ (Nannochloropsis gaditana)
CATCCTGTCTCGTCTATTTTCACCTTCTCTGTTTTCACTAAAGGAACATT
GCTAACAGGAAAAGTAGCTTTGTTCTCCATCCCCATTGAGGGCTGTCGCT
TGGCTGGAAGCGGAAGAACTCTTGCTTAAAGCACGTAGGCGCGCGAGGAG
TCTGGAACTCAAGTGAATATTTTGCTCTGTTTTTCTTGTCAAAAATGACC
TGCCGGAAGCTAAATCGTCTCGCAACACAAGTGGCCAAACTCACCTCGCC
CCTACCAGCGGCTTATAAACCTTGGGGGTACACTCTCGCCTTCGATATGA
TGGTACAGTTACCTCCGCTGGGTTGGACTTTACGATGTTTGCCTTGTTTC
TTCCCTTCGAGTGGTCATGAATACGCCATACATGACGATATCTCACCGAT
GATTGAATCGACTTAAATATTAGGTTAAGTTGGCTGGTACGGCGCGACTT
TGGGTTGAAGAGATGTCTGATAAACGAGCTGTTGTGCACCTGAAGAATCG
TCGGCGAGTGCAAAATCACATCGGCGGTATCCACGCTTGCGGTATGGCGC
TAGCCGCTGAAAGTGCTACAGGCATTGTGGTTGGCATGAATGTGCCAGAC
TCAGCACTACCACTCTGCAAAAGCATGAAAGTAAATTTCGTGAGGCGGTG
CGAGGGAGATATTAAGGCGGTGGCCCATCTGACAGAGGAGCAGCTTACTA
AGATCAATTctgaggagaaaggtgaCGTGCTGGTAGCTGTAGAGGTGACC
GATTCCAGCGGTAAGAGTCCGATAACAGCGGAAATGGTATGGGCGTGGGT
GCCGAAACTCCGAAAGGGGAAGtcatgagggaggagcatgCCCGGTGCAC
CGAGCGGTCGGGGccaggtaggagggaaggggcacaACCCCAGAAATAAG
ATGCTGCCTTTCTCATTGCTCGCGAACTAGTTCATCGCGTACAAGTCGAA
GCTGCAgttgctctttttccttctttatGCCCTCCCCAAAAGGATAC
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Coding sequence (CDS) from alignment at KK037253.1:52483..53479+

>rna9357 ID=rna9357|Name=rna9357|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at KK037253.1:52483..53479+ (Nannochloropsis gaditana)
ATGACCTGCCGGAAGCTAAATCGTCTCGCAACACAAGTGGCCAAACTCAC
CTCGCCCCTACCAGCGGCTTATAAACCTTGGGGGTACACTCTCGCCTTCG
ATATGATGGTTAAGTTGGCTGGTACGGCGCGACTTTGGGTTGAAGAGATG
TCTGATAAACGAGCTGTTGTGCACCTGAAGAATCGTCGGCGAGTGCAAAA
TCACATCGGCGGTATCCACGCTTGCGGTATGGCGCTAGCCGCTGAAAGTG
CTACAGGCATTGTGGTTGGCATGAATGTGCCAGACTCAGCACTACCACTC
TGCAAAAGCATGAAAGTAAATTTCGTGAGGCGGTGCGAGGGAGATATTAA
GGCGGTGGCCCATCTGACAGAGGAGCAGCTTACTAAGATCAATTctgagg
agaaaggtgaCGTGCTGGTAGCTGTAGAGGTGACCGATTCCAGCGGTAAG
AGTCCGATAACAGCGGAAATGGTATGGGCGTGGGTGCCGAAACTCCGAAA
GGGGAAGtcatgaATGACCTGCCGGAAGCTAAATCGTCTCGCAACACAAG
TGGCCAAACTCACCTCGCCCCTACCAGCGGCTTATAAACCTTGGGGGTAC
ACTCTCGCCTTCGATATGATGGTTAAGTTGGCTGGTACGGCGCGACTTTG
GGTTGAAGAGATGTCTGATAAACGAGCTGTTGTGCACCTGAAGAATCGTC
GGCGAGTGCAAAATCACATCGGCGGTATCCACGCTTGCGGTATGGCGCTA
GCCGCTGAAAGTGCTACAGGCATTGTGGTTGGCATGAATGTGCCAGACTC
AGCACTACCACTCTGCAAAAGCATGAAAGTAAATTTCGTGAGGCGGTGCG
AGGGAGATATTAAGGCGGTGGCCCATCTGACAGAGGAGCAGCTTACTAAG
ATCAATTctgaggagaaaggtgaCGTGCTGGTAGCTGTAGAGGTGACCGA
TTCCAGCGGTAAGAGTCCGATAACAGCGGAAATGGTATGGGCGTGGGTGC
CGAAACTCCGAAAGGGGAAGtcatga
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Synonyms
Publications