rna9332, rna9332 (mRNA) Nannochloropsis gaditana

Overview
Namerna9332
Unique Namerna9332
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2574
Alignment locationKK037252.1:415591..416041 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100630g2.4289.mrna
Orig protein idgnl|cribi|Naga_100630g2.4289
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:415591..416041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100630g2gene9048Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9332rna9332-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21372.1cds9302Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9332 ID=rna9332|Name=rna9332|organism=Nannochloropsis gaditana|type=mRNA|length=2574bp
CTCAATCCATGCGTACAGAAGCTCCTCAAATTTCAAACTCCTTTGAAAGT
GGGGGACGTGAACCGCGCAAAATGGGTCCGAACGGGGGTAGGAGGGAAAG
GGCAGAACTTCACGTAAGGAGGGAGGGAGGAAGTTTTTGAAGCGAGGAGG
GAGACAAGATGGGGATAAGACGTGCAGGTCGTGGCTGTGCCAACCTGAGT
GCGTCGATAGTCATAGTTGTGGTGCACGACGACATGCCGCACCCCGTCTT
TCCACACCAAATCTGGAGGACCCTTTTTGAATTTGAATTTGAATTTGAAT
TTTGATTTTCCTCCTATGGTGTCCAACCGGGCGGGAGTTAGGAAGGCTGC
CAATGCGTTGGGGATGGTGGACGTGGCACTGGCCCAATGGGTGGGAGGCG
AGACAGGCAACGAGGTGGAGAGAATCCTCCGCTCGTGGGGAAATCGTCTC
GTCGTTCAACGCGTGGAACAGCCGACCCGGACGTGCTACTCCTTGCTGCA
CCCGCTGGAAGGCCTCCCTCCCGCTCTCCCTCCCCCCCTCCCTCAGGAGG
GAGCGGAAGAAGACACCGAGCAGGGACAGGTCCCTTCGCCTTCGTTCTCC
ACCACCGAGATAGTCGAACCGGGGAAGCCGGTCACGCCGGAGGAGCAGGC
AGGGCTTCTCTCTGCCTTAGCCTCCTTCCTTTCCTCCCTCACGCCCTCCT
CCCCTCCCTCCTCCCTGCCCTCGTCGGTCCCACAAGCCATTGCGGTGATG
GGTTCACTTCCCACCGGAGTCCCTCCTGAATACTATGCGAAGGTGCTGCG
CCTTGTCTACGAGCTTCTCCCTCCCCCTTCTCCTACCCGCCCTCCCTCCC
TCCCTCCCCCTTGTCCTTCGCCCTGGCTCTTTTTGGACACGGTCGTGGGT
CTGGAGGCCATTTTGGAAACGGGCCTCCCTGTCTTCATGCTGAAGGTCAA
TGCCGCAGAGGCCTCCCATGTGACAAATGATCAACCGCTGGTCTGGTTGA
AATTGCATCCTCAAGTGCGGTACCTTGCTGTCACAGACGGGAGCAAGCCA
GCTCGCCTCTGTCGCCGGTGCCCTTGGGAAGGTGGGCGGGAAAAGGGAAG
GGCAGGACGGGGCGAGGAAGGGAGGGAGGAAGGGCTGTTGACCTACGAAT
ATACGCTGCCGCGTTTGCCGTCCGACCGCGTGGTCAACCCCATCGGCGCT
GGCGACGCCTGTGGCGGTGTGGTCCTGTCCGCCGCATTGCAAAGCCGACG
GAGGAACGAAGGTGGGGAGGTAGTATCGAGAGAGGAAGACATGAGAGTGG
TAGCGGCGTTGCGATTAGGCCTGGCGGCTGCCTCAGCCTCCTGCTTGACG
GAGGAAACGGGTGTGTTCGCGCGGGGGCGGGCGTCGGCGTTGGAAAGGAT
GATCACGCTTAAAGTCCACGTGACGCAATGACGGGTGCGAACGAAAGAGA
AGAGGCCAAAGTAAAATGTCACGAGCGCGAGCGTGGTGCTGGAGGTGTCT
CTTGCTTTTTGTCGTCACATGTGAAGCATTTGTTCGACCCCCAAGCCCAC
AAAACTTACAAATCAACCGTACAGGAGTCTCACGACTCGATGGGAGGGAC
GCAATGGCTAAGATAGTTGGGATACGTCGACAAAACATCTTCTTCTCATC
CTCGTGTAATGTGCGAATCACCTCACTTTCAAAAACAAGCGATACTGGCG
TTTATCACGCTTAAACATGTAGCCACATAGAACGTAGGTGTGTCGCATCA
CGCCCGCGTGAGCATACACGCCCAACATCGTGTCACGGCCTTACTACTCC
TGGCATAACATGAAAACGTTGGTGATTGCGGTAAACGAATATTTAAGACA
CCGTGGAGAATGCATGCATCGCGCATCTCCAAAGCAAACAAGATTCTGTC
ATGATTCCAAGCGGGATTTTCAATATCATTATAGCTTTGAATTGGATTGA
AAGTCATCTCCATGGTACATGCAGCACAATGGCTCCCAAATAATGGCGAA
TGACCCGCAATGCAAGACCAGTGCATCATCAGTGACAACACATTACATAA
CCTTCAATTATATCGATGATGTCATGGCAATACTTGCTTGTCGCATATGA
CAGCAAAGTGGAAAACTTCGCTCACAATGAAAGAGGCACGTCCCGCCCTC
GTTCCGCGCCTCGCCGTAAGCCCCCCAGGAAGGCAATACAGAACCGAAAA
AAACACGTGGAAGTCATCAGCTCTGTCTGTAGTCGACATTCTGACCTTTT
TGTTGACAGCACGCAAATCCTTTCAAGCAAGTGCTCGCCTTAAACCAAAA
ATGGATGTCCACACCAAGGACGTGGAAGAAAAATGCCGAAGATATAATAT
TAAAATAGATACGGAGGCACTGCCTTTAAAGATTTGTGGGGGCTTCCGAA
TGTGCAAACAAAGCGCACGCACAGCTCTTCTCCTTCTCGAAGAGACCTAG
CGCGCAGTAGCGTGCTTCATATATTAATTTAGGCCCCGCAGGGTCGATCG
TGTTATTGTTCTGCTTGCACATCTTGGCTGCGATATCCATAAATTTCCGG
AGACCTTCCTCGGCTCTACAACCG
back to top

protein sequence of rna9332

>rna9332-protein ID=rna9332-protein|Name=rna9332|organism=Nannochloropsis gaditana|type=polypeptide|length=84bp
MCKQNNNTIDPAGPKLIYEARYCALGLFEKEKSYRADDFHVFFSVLYCLP
GGLTARRGTRAGRASFIVSEVFHFAVICDKQVLP
back to top

mRNA from alignment at KK037252.1:415591..416041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9332 ID=rna9332|Name=rna9332|organism=Nannochloropsis gaditana|type=mRNA|length=451bp|location=Sequence derived from alignment at KK037252.1:415591..416041- (Nannochloropsis gaditana)
ATGTGCAAGCAGAACAATAACACGATCGACCCTGCGGGGCCTAAATTAAT
ATATGAAGCACGCTACTGCGCGCTAGGTCTCTTCGAGAAGGAGAAGAGCT
GTGCGTGCGCTTTGTTTGCACATTCGGAAGCCCCCACAAATCTTTAAAGG
CAGTGCCTCCGTATCTATTTTAATATTATATCTTCGGCATTTTTCTTCCA
CGTCCTTGGTGTGGACATCCATTTTTGGTTTAAGGCGAGCACTTGCTTGA
AAGGATTTGCGTGCTGTCAACAAAAAGGTCAGAATGTCGACTACAGACAG
AGCTGATGACTTCCACGTGTTTTTTTCGGTTCTGTATTGCCTTCCTGGGG
GGCTTACGGCGAGGCGCGGAACGAGGGCGGGACGTGCCTCTTTCATTGTG
AGCGAAGTTTTCCACTTTGCTGTCATATGCGACAAGCAAGTATTGCCATG
A
back to top

Coding sequence (CDS) from alignment at KK037252.1:415591..416041-

>rna9332 ID=rna9332|Name=rna9332|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at KK037252.1:415591..416041- (Nannochloropsis gaditana)
ACAGAGCTGATGACTTCCACGTGTTTTTTTCGGTTCTGTATTGCCTTCCT
GGGGGGCTTACGGCGAGGCGCGGAACGAGGGCGGGACGTGCCTCTTTCAT
TGTGAGCGAAGTTTTCCACTTTGCTGTCATATGCGACAAGCAAGTATTGC
CATGAATGTGCAAGCAGAACAATAACACGATCGACCCTGCGGGGCCTAAA
TTAATATATGAAGCACGCTACTGCGCGCTAGGTCTCTTCGAGAAGGAGAA
GAGCTACAGAGCTGATGACTTCCACGTGTTTTTTTCGGTTCTGTATTGCC
TTCCTGGGGGGCTTACGGCGAGGCGCGGAACGAGGGCGGGACGTGCCTCT
TTCATTGTGAGCGAAGTTTTCCACTTTGCTGTCATATGCGACAAGCAAGT
ATTGCCATGAATGTGCAAGCAGAACAATAACACGATCGACCCTGCGGGGC
CTAAATTAATATATGAAGCACGCTACTGCGCGCTAGGTCTCTTCGAGAAG
GAGAAGAGCT
back to top
Synonyms
Publications