rna9320, rna9320 (mRNA) Nannochloropsis gaditana

Overview
Namerna9320
Unique Namerna9320
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length297
Alignment locationKK037252.1:375479..376125 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100595g2.1489.mrna
Orig protein idgnl|cribi|Naga_100595g2.1489
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:375479..376125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100595g2gene9036Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21382.1cds9290Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9320rna9320-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9320 ID=rna9320|Name=rna9320|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGCATCAAGAAAAATCTCTGGCGCGATGCCATGCCAGCCTCCCGGCAAA
CCAGCAACGGAAGTGGCTACCCCTTGCATTTTTTGAACGTGACGCAGATC
CAAACCCTGGAGGTCTGCGAGGGGGGGAGCGAGGGGAAGGAGGGGGGCGG
GGAGGAAGTAGGAACGGGGGCGGTGATACCGGACGATCGCTTGTCCAAAT
TGGAGAAGGAAGTGCGGGCCAGGGCGGCCAAGGAGATGGCGAAGATCAAT
TTGGCGGCCACCCCCCAGGGGCAGATGAGCTTCGACCACATAAGTAA
back to top

protein sequence of rna9320

>rna9320-protein ID=rna9320-protein|Name=rna9320|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MASGTTKLTLSTQDYVKVKTVGGEVLQGRVHALCESTSTLVIRLAGAGTS
GGKEGEREGVGEGGGSEGVREGGKDRHTPQTAFEDDQEALRGAKGTKGCW
AKRCLSSLHGS
back to top

mRNA from alignment at KK037252.1:375479..376125-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9320 ID=rna9320|Name=rna9320|organism=Nannochloropsis gaditana|type=mRNA|length=647bp|location=Sequence derived from alignment at KK037252.1:375479..376125- (Nannochloropsis gaditana)
ACCCTGCGAGCGGCGCATGCCTCCCGAGGCCTTCCAGAGTGATCACTAAG
AGCTTTGTTGTGTGACGTCAGACATGTCGGCATTTTTATACGGGGGAAAG
GGCGGCCAAGCTCACCAAGCGTTTCTCCCTCACCCTCAGCAGAAAGGAGG
AGCAAGGACAGGAAGGCGCTAAAGTACGGGGGTGCATCCACACAAATCAT
CGCATCCTCCTTCGTCTGACCTTCATTTAGGCCTCTTTTTTGCCTGCATC
GGTGCAGCAGTGGTGTGATTGCAGAGGGTTTCACGGAGCGCGCTTCCTTG
GGCAGACAAGGAATGGCTTCGGGAACGACGAAGCTAACCTTGTCGACGCA
AGACTACGTGAAAGTGAAGACGGTGGGAGGCGAAGTCTTGCAAGGACGTG
TGCATGCCTTGTGTGAGAGCACCAGCACGTTGGTCATTCGCCTGGCCGGA
GCGGGTACCTCAGGTGGGAAGGAGGGAGAGAGGGAGGGAGTGGGGGAGGG
GGGGGGGAGTGAGGGAGTGAGGGAGGGAGGGAAGGATAGGCACACTCCGC
AGACGGCTTTTGAAGACGATCAGGAGGCTCTCAGAGGCGCAAAGGGTACC
AAGGGCTGCTGGGCAAAAAGGTGCTTGTCCTCCCTGCACGGATCCAT
back to top

Coding sequence (CDS) from alignment at KK037252.1:375479..376125-

>rna9320 ID=rna9320|Name=rna9320|organism=Nannochloropsis gaditana|type=CDS|length=335bp|location=Sequence derived from alignment at KK037252.1:375479..376125- (Nannochloropsis gaditana)
ATGGCTTCGGGAACGACGAAGCTAACCTTGTCGACGCAAGACTACGTGAA
AGTGAAGACGGTGGGAGGCGAAGTCTTGCAAGGACGTGTGCATGCCTTGT
GTGAGAGCACCAGCACGTTGGTCATTCGCCTGGCCGGAGCGGGTACCTCA
GGTGGGAAGGAGGGAGAGAGGGAGGGAGTGGGGGAGGGGGGGGGGAGTGA
GGGAGTGAGGGAGGGAGGGAAGGATAGGCACACTCCGCAGACGGCTTTTG
AAGACGATCAGGAGGCTCTCAGAGGCGCAAAGGGTACCAAGGGCTGCTGG
GCAAAAAGGTGCTTGTCCTCCCTGCACGGATCCAT
back to top
Synonyms
Publications