EWM21382.1, cds9290 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21382.1
Unique Name	cds9290
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037252.1:375479..375813 -

Link to JBrowse

Properties


Property Name	Value
Start range	375479
Start range	.
Protein id	EWM21382.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100595g2.1489.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:375479..375813 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM21382.1 vs. NCBI_GenBank
Match: gi|585101597|gb|EWM21382.1| (hypothetical protein Naga_100595g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 218.009 bits (554), Expect = 8.161e-72
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query:    1 MASGTTKLTLSTQDYVKVKTVGGEVLQGRVHALCESTSTLVIRLAGAGTSGGKEGEREGVGEGGGSEGVREGGKDRHTPQTAFEDDQEALRGAKGTKGCWAKRCLSSLHGS 111
            MASGTTKLTLSTQDYVKVKTVGGEVLQGRVHALCESTSTLVIRLAGAGTSGGKEGEREGVGEGGGSEGVREGGKDRHTPQTAFEDDQEALRGAKGTKGCWAKRCLSSLHGS
Sbjct:    1 MASGTTKLTLSTQDYVKVKTVGGEVLQGRVHALCESTSTLVIRLAGAGTSGGKEGEREGVGEGGGSEGVREGGKDRHTPQTAFEDDQEALRGAKGTKGCWAKRCLSSLHGS 111

The following BLAST results are available for this feature:

BLAST of EWM21382.1 vs. NCBI_GenBank

BLAST of EWM21382.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101597\|gb\|EWM21382.1\|	8.161e-72	100.00	hypothetical protein Naga_100595g2, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9320	rna9320	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications