rna9317, rna9317 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9317
Unique Name	rna9317
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1957
Alignment location	KK037252.1:368968..370801 -

Link to JBrowse

Properties


Property Name	Value
Product	transaldolase
Orig transcript id	gnl\|cribi\|Naga_100215g12.1633.mrna
Orig protein id	gnl\|cribi\|Naga_100215g12.1633
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:368968..370801 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100215g12	gene9033	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9317	rna9317-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21391.1	cds9287	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:368968..370801-
coding sequence from alignment at KK037252.1:368968..370801-

mRNA sequence

>rna9317 ID=rna9317|Name=rna9317|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp
CCGGTGGCTCTCTGCCTCGTTGACACAGGTACCCACCACTTGCACACGTA
CGGGTTATTTGACCACGTGTGTGTGCTAGTATAGGGGCTAGAGGACAGGA
AGATGGCGCCGCTTCCTTCGAGCCTTCGACAGCCCCCTCCCTCTGCAAGA
AGTGACAGTGCATCGACACTCACCCCGCGCGGGCAAGCGCCCAATACCAA
CGGTCCAACCATCTTGAACCCTTCCACATCACATTTATCGCGGGCTTCAC
CGCTCAAGCCGTGGGAGCAATCTGCACGGCGGGTAATGACTGCCAATACT
GCTGGCCACGCAGGAGGAAACGAACGACCACAAGGGAATGGGCTCTCGCA
CACGCCTCGAGAAGCTGTCAATTATCGGACCACAAACCCCAACCCGGCCC
GAAACGTAGGCAGTATCAGCCACACAACGGGAAGCAGTAGCACCCGAAGC
CTGGCCGGAGGTGTCAAGGGACAGGGGAACGGAGAAGAGGATTTCCAAGA
CAGGTCGAGTGCACAGCTCTCTGAGCTCGGCCATCCCCAGGATGCTCCCA
CACAAGCTGCCTCCTCGGCACCGTACACCAACCACGCGGCAAACGGAGGT
CCGTACGCCCCTCCCACGTCTCGATACGGCCAGCTGGGTACTAGTAGCAA
CGGGGGCATGTATGGGTATCCGGGCACCACCTATGGGGGGGCCGGGGCGT
ATGGAAGGTACAACTCAGGCTCCATGTACGGATCCTCTTCCCTTTATGGA
AGCGGGTACGGTGCGGGTAGCATGTATGGCACGCCTTCGATGTACGGTGG
GATGGGCGGGATGTATGGGGGAGGGTATGGCTACGGGGGGCGGGGGGGTA
TGTACGGCAGCATGCACGGTGGAGGCATGGGAGGGGAGGGGAGCATCGGA
TGGCTGCAGAACGTTTTCCATTTGGTGTCGTCCTTGGGGCAGATGACAGA
GTTGCTGGGGATGAACACGGAGGCGCTCGGGTATTTGTTTGGGACTCTGA
TGGGCTTCGCCGAAACGGCGGGTAACGTCCTGGGTCAGCTGACAGCGAGG
CCGGCCCGGTTGTTGGAAGCAGGGCAGGAAGGGGTCACGGAGGAGGAGGC
AGCGGTCCGGGCGAAGCAGGAGAAGATCGTCCGGGTGGTGCGATGGGCCG
TGGGCTTGGCGTTGTCGTACTTGGCCTGGCGGGTGCTGAGGAAAGTAGGC
CGGTGGGTCAAGGCGGGAGACACACGGAGGGACGTGGCGCTGGCGGCGGC
GGCGGGGGCGATGGTTGGGGCGGGGGGGCGAGGGGGTCGAGGACAGCTGC
AGCCTTACCTTCCTCCGTCCCCGCCGCCGCAGGCATGGTCGGCGCGGCGG
CCGATGCCGGGGGAAGGGGGAGAGAGAAGGTGGGGAGGGGGGGGCAGGGG
AGAAGAACATGTAGAAGGCTTACCGAATGCGGCCTTGGAGCAGGCGTTCC
ACTCGTCTTCCGGGGGAGGGGTAAGGCCAGGGGAGATTTGAACAAGGCCG
GTGATGGGAGAGGACACAAGGGCTTGTGATGGTAGGATTGTAATATAGAA
GAGGAGGCAGAGCACGGAGGGAACGAAGGGAGGGAAACGATCCGGGGGAA
GAAAAGGCTTGCGGTGGGTCTCGTTGGACGCGCCATTGCCTCGTCATCAA
GGAGATCTGGTCTGGCTCGACGCGCTTGGGATGGTGGTGGTTCGATTCCT
TTCGTCCTTGTTCGTGTTTTTCTTTTCCCCCGGGCGACGAGCTTTACCGC
CTCTTTTCCTTCCCTCCTGCCATGTGTATATATCCACTGTTAATCCACTG
GCTCCCCTCCCCCTCGCTCGTGTGACACCAGCTAAGTACCTATACCTCTC
ACAAAGCATATATATGTATATATATATTAAATTAAGCCATAACTACATGG
AGATACAAAGCATAAATATAAATGTATACATCTGCTTCATGCTCCAGGTC
CTTGGTC

protein sequence of rna9317

>rna9317-protein ID=rna9317-protein|Name=rna9317|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MAKLKRFLRKASFLLATSPSSSFSWPRAFFPSPSHGGPPPARTTRYFSPA
SKMYMKATSSSRTPSNLLAQVRCHSQVILDTADYLQLAHLPGTLEVTTNP
SIVWQAAQKEEYFHLLEEACNMYLPLGIDGIPDMLEAVPPKFAREIWKRL
PHAPSSSSLPLPRVYVQLDPRYAFDIDLAVRQSLALVDLCVHKHQLPLSN
LVIKIPGSWEGIQAAKDLRALERVFFDYLRERPGV

mRNA from alignment at KK037252.1:368968..370801-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9317 ID=rna9317|Name=rna9317|organism=Nannochloropsis gaditana|type=mRNA|length=1834bp|location=Sequence derived from alignment at KK037252.1:368968..370801- (Nannochloropsis gaditana)
ATGGCCAAACTGAAACGATTTTTGAGAAAAGCCTCCTTTCTCTTGGCGAC
ATCCCCATCCTCCTCCTTTTCCTGGCCCCGTGCGTTTTTCCCCTCTCCCT
CCCACGGAGGCCCGCCGCCTGCCCGCACAACCCGCTACTTTTCCCCTGCC
TCGAAGATGTACATGAAGGCCACCTCCTCTTCCCGCACCCCTTCTAATCT
TCTTGCGCAAGTCCGTTGCCATTCTCAAGTCATCCTCGACACAGCAGACT
ACTTGCAATTGGCACATCTTCCGGGTACCCTGGAGGTGACGACCAACCCT
TCTATCGTCTGGCAAGCCGCCCAGAAAGAAGAATACTTCCATCTGTTGGA
AGAAGCCTGCAATGTACGTGAGAAAGGTTAGAACATGAAACCCGGACTTC
TTTTCAACGGTGTCGGCTCGAGCCATTCTTCGTGCTATCTACCTATGCAA
CAGCATATAATAATATAATAATATGCTCGAGCCGTCAGGTCCATGCAAAA
GCCAGCACGCGAGCCTGCTTGAATGACTGCGGACTCCTGCCACTGAATGG
ATTTACTTTTCCCCTCCACCTGGTGCCTCTCCCTCAAACAGATGTACCTC
CCCTTGGGCATCGATGGCATCCCTGACATGTTAGAAGCCGTCCCGCCCAA
ATTTGCTCGCGAAATTTGGAAACGGCTCCCGCATGCTCCCTCCTCCTCCT
CCCTTCCTCTCCCCCGAGTGTACGTGCAGCTGGATCCTCGTTATGCTTTC
GACATCGACCTCGCCGTGCGTCAGTCCCTAGCCCTTGTCGACTTGTGCGT
CCACAAGCATCAACTCCCGTTGTCCAACCTGGTGATCAAGATACCCGGAT
CTTGGGAAGGGATTCAGGCCGCCAAGGTGCTGGAGAGGGGGGAGGGGGAG
GGCGGGAAGGAGGGAGGGGTGAGGTGTCTCGTCACTGGCGTGACGTCCAT
TGTGCAGGCTTATGCCGCCGCCGAGGCGGGGGCCAGCTACGTGGCACCCT
ACGTGGGGAGGGTGAGTGATTGGGAGGGAAGGGAGGAGGACAAGGAGGAA
GAGGGTGCAGAGGAGAGGGGCGTGACCTTGGCCCGGGACATCCAAGTCTT
GTTCAAAATGAGGAGATGGGCGGGGACGCTCGTGATGGCGGCGAGCCTGC
GGGGCATCGAGCAAGTCAAACAGTTGAGCGGCTGCGACATTTTGACGGTC
AGTCCGCAGGTGATGATTGCCTTGGAGTGCGCCGAACCTGTCTTGGAGGA
GGAGGAAGGAGGAGGGGAAGGTCTTGCTTCCTTCCTCCCGCCCGCGCCGA
GCCCTGGGGACCTCAGCCTGAAATCCCGGCGGCTGTTGGGAATGGAGGGA
AAAGGGGGGGGAGGGAGGGAGGGGAGGGAGGGAGGGCGGGGTCCCGATGA
CGGAGGCGGAGTTTCGGACCGCCCTGGCGGAAGATGCATGTGGAACGGCC
GTATTCGCCAAGAGCATGAAGACATTCATTCAGGTCAGGGTGGGAGGGAG
GGGAGGAAGAGGAAGGGCAGAGAGTTCATAAGGCGGGAGGTTTATGGCAC
CTTAAGGGGGAACGGGGGGGGAGAGGAAGGTACGGGACTGGAAGGATCGT
TCATGGGAAGCTGCGATGGGACGGGTAGGGCGACAGCGAATCCGCTTGGA
GGCTCGTAGCATCCCTATCGGGGGATGAATCAATCATCTTGCTTCCTCCC
GTACGCCATTGGTCTCGTAACTACGGCCCCATATTTAAAATATGTGAATA
TATACATATCACATGCACTGACAGGATCTGCGGGCTTTGGAGCGAGTTTT
CTTTGACTACCTGAGGGAGAGGCCAGGGGTATGA

Coding sequence (CDS) from alignment at KK037252.1:368968..370801-

>rna9317 ID=rna9317|Name=rna9317|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at KK037252.1:368968..370801- (Nannochloropsis gaditana)
GATCTGCGGGCTTTGGAGCGAGTTTTCTTTGACTACCTGAGGGAGAGGCC
AGGGGTATGAATGTACCTCCCCTTGGGCATCGATGGCATCCCTGACATGT
TAGAAGCCGTCCCGCCCAAATTTGCTCGCGAAATTTGGAAACGGCTCCCG
CATGCTCCCTCCTCCTCCTCCCTTCCTCTCCCCCGAGTGTACGTGCAGCT
GGATCCTCGTTATGCTTTCGACATCGACCTCGCCGTGCGTCAGTCCCTAG
CCCTTGTCGACTTGTGCGTCCACAAGCATCAACTCCCGTTGTCCAACCTG
GTGATCAAGATACCCGGATCTTGGGAAGGGATTCAGGCCGCCAAGATGGC
CAAACTGAAACGATTTTTGAGAAAAGCCTCCTTTCTCTTGGCGACATCCC
CATCCTCCTCCTTTTCCTGGCCCCGTGCGTTTTTCCCCTCTCCCTCCCAC
GGAGGCCCGCCGCCTGCCCGCACAACCCGCTACTTTTCCCCTGCCTCGAA
GATGTACATGAAGGCCACCTCCTCTTCCCGCACCCCTTCTAATCTTCTTG
CGCAAGTCCGTTGCCATTCTCAAGTCATCCTCGACACAGCAGACTACTTG
CAATTGGCACATCTTCCGGGTACCCTGGAGGTGACGACCAACCCTTCTAT
CGTCTGGCAAGCCGCCCAGAAAGAAGAATACTTCCATCTGTTGGAAGAAG
CCTGCAATGATCTGCGGGCTTTGGAGCGAGTTTTCTTTGACTACCTGAGG
GAGAGGCCAGGGGTATGAATGTACCTCCCCTTGGGCATCGATGGCATCCC
TGACATGTTAGAAGCCGTCCCGCCCAAATTTGCTCGCGAAATTTGGAAAC
GGCTCCCGCATGCTCCCTCCTCCTCCTCCCTTCCTCTCCCCCGAGTGTAC
GTGCAGCTGGATCCTCGTTATGCTTTCGACATCGACCTCGCCGTGCGTCA
GTCCCTAGCCCTTGTCGACTTGTGCGTCCACAAGCATCAACTCCCGTTGT
CCAACCTGGTGATCAAGATACCCGGATCTTGGGAAGGGATTCAGGCCGCC
AAGATGGCCAAACTGAAACGATTTTTGAGAAAAGCCTCCTTTCTCTTGGC
GACATCCCCATCCTCCTCCTTTTCCTGGCCCCGTGCGTTTTTCCCCTCTC
CCTCCCACGGAGGCCCGCCGCCTGCCCGCACAACCCGCTACTTTTCCCCT
GCCTCGAAGATGTACATGAAGGCCACCTCCTCTTCCCGCACCCCTTCTAA
TCTTCTTGCGCAAGTCCGTTGCCATTCTCAAGTCATCCTCGACACAGCAG
ACTACTTGCAATTGGCACATCTTCCGGGTACCCTGGAGGTGACGACCAAC
CCTTCTATCGTCTGGCAAGCCGCCCAGAAAGAAGAATACTTCCATCTGTT
GGAAGAAGCCTGCAATGATCTGCGGGCTTTGGAGCGAGTTTTCTTTGACT
ACCTGAGGGAGAGGCCAGGGGTATGAATGTACCTCCCCTTGGGCATCGAT
GGCATCCCTGACATGTTAGAAGCCGTCCCGCCCAAATTTGCTCGCGAAAT
TTGGAAACGGCTCCCGCATGCTCCCTCCTCCTCCTCCCTTCCTCTCCCCC
GAGTGTACGTGCAGCTGGATCCTCGTTATGCTTTCGACATCGACCTCGCC
GTGCGTCAGTCCCTAGCCCTTGTCGACTTGTGCGTCCACAAGCATCAACT
CCCGTTGTCCAACCTGGTGATCAAGATACCCGGATCTTGGGAAGGGATTC
AGGCCGCCAAGATGGCCAAACTGAAACGATTTTTGAGAAAAGCCTCCTTT
CTCTTGGCGACATCCCCATCCTCCTCCTTTTCCTGGCCCCGTGCGTTTTT
CCCCTCTCCCTCCCACGGAGGCCCGCCGCCTGCCCGCACAACCCGCTACT
TTTCCCCTGCCTCGAAGATGTACATGAAGGCCACCTCCTCTTCCCGCACC
CCTTCTAATCTTCTTGCGCAAGTCCGTTGCCATTCTCAAGTCATCCTCGA
CACAGCAGACTACTTGCAATTGGCACATCTTCCGGGTACCCTGGAGGTGA
CGACCAACCCTTCTATCGTCTGGCAAGCCGCCCAGAAAGAAGAATACTTC
CATCTGTTGGAAGAAGCCTGCAAT

Synonyms

Publications