rna9316, rna9316 (mRNA) Nannochloropsis gaditana

Overview
Namerna9316
Unique Namerna9316
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1130
Alignment locationKK037252.1:366779..368735 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100215g11.1628.mrna
Orig protein idgnl|cribi|Naga_100215g11.1628
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:366779..368735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100215g11gene9032Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9316rna9316-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21386.1cds9286Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9316 ID=rna9316|Name=rna9316|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp
ATGATGGGACAGAAGGACAGAGGAACACAAAAAGGGAACAAGACGACGCG
GGTAGCCAAGCCGTGTATCGAAGTCTGCGGGATGATCGGTGCGAGTCTTT
CCGCAGGGTACCGTCCATGTCACGTGGAGGTCATAAAAGGTTGTCACATT
GTGGGGTTAGTTTTCCTCCAGACATGCAGCATCATCAGACCTCCGTGACG
TGGGTGGTTTTCCTCTCTTGTATACTGCTCTTGGGTCAAGTTCCGGCCTT
TGTGCGGTGTCCAAAGCCCACACAAATCCAAGTTGGTGGCGTTTCAATGC
AAAGGTGCTGTACCGCTCTCACCTCGTCGTCGTCGTCCTCCTCCTCTCCC
CGTTCCTCCTCCTCGTCTCCTCCCTCGACCCATCGCAATCCCCCCTCTTT
CGTCCTGCGCCGCACGTTCGGTCTCCTCACAAGCGTCGCCGCCTTCTTTC
TTGCCCCTACCTCCTTCCCTCCCTCCTCCCCTTCTTCCACTTCCATCACC
ACAACTTCCTCCTGGTCGGCGCAGGCGGCCGACGCCACGGACCTGCAAGA
TCTGTCGGCTCCCACACCGGCGGAAAAAGAAGCAGCGAGGGTCAAGGCCA
AATTGAAACGACAACAGGAGGCCCTGATCATGGAGAATGCCGCAAAAGGG
GGCGGGGACGAGAAGAATTACGGAGATTCATTGAAGAGGGAGAGGGAGAA
GCAGCGGATGCTGAAGAAGGATGCGAAGCAACGTAGGCAGGACTTGTGTG
AGCAGCTGGGACGGGGTTGCTAGGGAGGGAGGGAGGGAGGGAGGGAAGGA
GGGAGGGAAGGAGGGGTGGCTTAGCGTCCGAAAGGGTTATTGGTGCTCTG
CGACAAATGAAAGGGGTGGGGATGGATGCTGGAGAGGGCAAAGGAAGGAG
AGGAAGAGGGAGATGTGGAAAAGAGGGTCCTGAACAGCCGCAGATTCGGC
CGGGAGCGTGGCTTGGTGGAGGGGAAAAATTACCGAAACGGGAATTCGAA
AATTTAAAATTCACATGGCTGTCTGAGTCCGACCCAGGGCAACACGGAAG
TGTTTTTTTTGGATACTTTTTAAAAATGTTCCTTTTAATGCAAACATCTT
CAGCATCCCCTATTCGGACGTGCTTTTGCT
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protein sequence of rna9316

>rna9316-protein ID=rna9316-protein|Name=rna9316|organism=Nannochloropsis gaditana|type=polypeptide|length=462bp
MAPLPSSLRQPPPSARSDSASTLTPRGQAPNTNGPTILNPSTSHLSRASP
LKPWEQSARRVMTANTAGHAGGNERPQGNGLSHTPREAVNYRTTNPNPAR
NVGSISHTTGSSSTRSLAGGVKGQGNGEEDFQDRSSAQLSELGHPQDAPT
QAASSAPYTNHAANGGPYAPPTSRYGQLGTSSNGGMYGYPGTTYGGAGAY
GRYNSGSMYGSSSLYGSGYGAGSMYGTPSMYGGMGGMYGGGYGYGGRGGM
YGSMHGGGMGGEGSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLM
GFAETAGNVLGQLTARPARLLEAGQEGVTEEEAAVRAKQEKIVRVVRWAV
GLALSYLAWRVLRKVGRWVKAGDTRRDVALAAAAGAMVGAGGRGGRGQLQ
PYLPPSPPPQAWSARRPMPGEGGERRWGGGGRGEEHVEGLPNAALEQAFH
SSSGGGVRPGEI
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mRNA from alignment at KK037252.1:366779..368735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9316 ID=rna9316|Name=rna9316|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp|location=Sequence derived from alignment at KK037252.1:366779..368735+ (Nannochloropsis gaditana)
CCGGTGGCTCTCTGCCTCGTTGACACAGGTACCCACCACTTGCACACGTA
CGGGTTATTTGACCACGTGTGTGTGCTAGTATAGGGGCTAGAGGACAGGA
AGATGGCGCCGCTTCCTTCGAGCCTTCgacagccccctccctctgcaaGA
AGTGACAGTGCATCGACACTCACCCCGCGCGGGCAAGCGCCCAATACCAA
CGGTCCAACCATCTTGAACCCTTCCACATCACATTTATCGCGGGCTTCAC
CGCTCAAGCCGTGGGAGCAATCTGCACGGCGGGTAATGACTGCCAATACT
GCTGGCCACGCAGGAGGAAACGAACGACCACAAGGGAATGGGCTCTCGCA
CACGCCTCGAGAAGCTGTCAATTATCGGACCACAAACCCCAACCCGGCCC
GAAACGTAGGCAGTATCAGCCACACAACGGGAAGCAGTAGCACCCGAAGC
CTGGCCGGAGGTGTCAAGGGACAGGGGAACGGAGAAGAGGATTTCCAAGA
CAGGTCGAGTGCACAGCTCTCTGAGCTCGGCCATCCCCAGGATGCTCCCA
CACAAGCTGCCTCCTCGGCACCGTACACCAACCACGCGGCAAACGGAGGT
CCGTacgcccctcccacgtctCGATACGGCCAGCTGGGTACTAGTAGCAA
CGGGGGCATGTATGGGTATCCGGGCACCACCTatgggggggccggggcgt
aTGGAAGGTACAACTCAGGCTCCATGTACGGATCCTCTTCCCTTTATGGA
AGCGGGTACGGTGCGGGTAGCATGTATGGCACGCCTTCGATGTACGGTGG
GATGGGCGGGATGTATGGGGGAGGGTATGGCtacggggggcgggggggta
tGTACGGCAGCATGCACGGTGGaggcatgggaggggaggggagcatcGGA
TGGCTGCAGAACGTTTTCCATTTGGTGTCGTCCTTGGGGCAGATGACAGA
GTTGCTGGGGATGAACACGGAGGCGCTCGGGTATTTGTTTGGGACTCTGA
TGGGCTTCGCCGAAACGGCGGGTAACGTCCTGGGTCAGCTGACAGCGAGG
CCGGCCCGGTTGTTGGaagcagggcaggaaggggtcacggaggaggaggc
agcggtcCGGGCGAAGCAGGAGAAGATCGTCCGGGTGGTGCGATGGGCCG
TGGGCTTGGCGTTGTCGTACTTGGCCTGGCGGGTGCTGAGGAAAGTAGGC
CGGTGGGTCAAGGCGGGAGACACACGGAGGGAcgtggcgctggcggcggc
ggcgggggcgatggttggggcgggggggcgagggggtcGAGGACAGCTGC
AGCCTTaccttcctccgtccccgccgccgcaggCATGGTCGGCGCGGCGG
CCGAtgccgggggaagggggagagagaaggtggggaggggggggcagggg
agaagaacATGTAGAAGGCTTACCGAATGCGGCCTTGGAGCAGGCGTTCC
ACTCGTCTTCCGGGGGAGGGGTAAGGCCAGGGGAGATTTGAACAAGGCCG
GTGATGGGAGAGGACACAAGGGCTTGTGATGGTAGGATTGTAAtatagaa
gaggaggcagagcacggagggaacgaagggagggaaacgatccgggggaa
gaaaaggcttGCGGTGGGTCTCGTTGGACGCGCCATTGCCTCGTCATCAA
GGAGATCTGGTCTGGCTCGACGCGCTTGGGATGGTGGTGGTTCGATTCCT
TTCGTCCTTGTTCgtgtttttcttttcccccgggCGACGAGCTTTaccgc
ctcttttccttccctcctgccatgTGTATATATCCACTGTTAATCCACtg
gctcccctccccctcgctcgtGTGACACCAGCTAAGTACCTATACCTCTC
ACAAAgcatatatatgtatatatatattaaATTAAGCCATAACTACATGG
AGATACAAAGCATAAATATAAATGTATACATCTGCTTCATGCTCCAGGTC
CTTGGTC
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Coding sequence (CDS) from alignment at KK037252.1:366779..368735+

>rna9316 ID=rna9316|Name=rna9316|organism=Nannochloropsis gaditana|type=CDS|length=1389bp|location=Sequence derived from alignment at KK037252.1:366779..368735+ (Nannochloropsis gaditana)
ATGGCGCCGCTTCCTTCGAGCCTTCgacagccccctccctctgcaaGAAG
TGACAGTGCATCGACACTCACCCCGCGCGGGCAAGCGCCCAATACCAACG
GTCCAACCATCTTGAACCCTTCCACATCACATTTATCGCGGGCTTCACCG
CTCAAGCCGTGGGAGCAATCTGCACGGCGGGTAATGACTGCCAATACTGC
TGGCCACGCAGGAGGAAACGAACGACCACAAGGGAATGGGCTCTCGCACA
CGCCTCGAGAAGCTGTCAATTATCGGACCACAAACCCCAACCCGGCCCGA
AACGTAGGCAGTATCAGCCACACAACGGGAAGCAGTAGCACCCGAAGCCT
GGCCGGAGGTGTCAAGGGACAGGGGAACGGAGAAGAGGATTTCCAAGACA
GGTCGAGTGCACAGCTCTCTGAGCTCGGCCATCCCCAGGATGCTCCCACA
CAAGCTGCCTCCTCGGCACCGTACACCAACCACGCGGCAAACGGAGGTCC
GTacgcccctcccacgtctCGATACGGCCAGCTGGGTACTAGTAGCAACG
GGGGCATGTATGGGTATCCGGGCACCACCTatgggggggccggggcgtaT
GGAAGGTACAACTCAGGCTCCATGTACGGATCCTCTTCCCTTTATGGAAG
CGGGTACGGTGCGGGTAGCATGTATGGCACGCCTTCGATGTACGGTGGGA
TGGGCGGGATGTATGGGGGAGGGTATGGCtacggggggcgggggggtatG
TACGGCAGCATGCACGGTGGaggcatgggaggggaggggagcatcGGATG
GCTGCAGAACGTTTTCCATTTGGTGTCGTCCTTGGGGCAGATGACAGAGT
TGCTGGGGATGAACACGGAGGCGCTCGGGTATTTGTTTGGGACTCTGATG
GGCTTCGCCGAAACGGCGGGTAACGTCCTGGGTCAGCTGACAGCGAGGCC
GGCCCGGTTGTTGGaagcagggcaggaaggggtcacggaggaggaggcag
cggtcCGGGCGAAGCAGGAGAAGATCGTCCGGGTGGTGCGATGGGCCGTG
GGCTTGGCGTTGTCGTACTTGGCCTGGCGGGTGCTGAGGAAAGTAGGCCG
GTGGGTCAAGGCGGGAGACACACGGAGGGAcgtggcgctggcggcggcgg
cgggggcgatggttggggcgggggggcgagggggtcGAGGACAGCTGCAG
CCTTaccttcctccgtccccgccgccgcaggCATGGTCGGCGCGGCGGCC
GAtgccgggggaagggggagagagaaggtggggaggggggggcaggggag
aagaacATGTAGAAGGCTTACCGAATGCGGCCTTGGAGCAGGCGTTCCAC
TCGTCTTCCGGGGGAGGGGTAAGGCCAGGGGAGATTTGA
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Synonyms
Publications