EWM21386.1, cds9286 (CDS) Nannochloropsis gaditana

Overview
NameEWM21386.1
Unique Namecds9286
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:366881..368269 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21386.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100215g11.1628.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:366881..368269 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21386.1 vs. NCBI_GenBank
Match: gi|585101603|gb|EWM21386.1| (hypothetical protein Naga_100215g11 [Nannochloropsis gaditana])

HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0
Identity = 462/462 (100.00%), Postives = 462/462 (100.00%), Query Frame = 0
Query:    1 MAPLPSSLRQPPPSARSDSASTLTPRGQAPNTNGPTILNPSTSHLSRASPLKPWEQSARRVMTANTAGHAGGNERPQGNGLSHTPREAVNYRTTNPNPARNVGSISHTTGSSSTRSLAGGVKGQGNGEEDFQDRSSAQLSELGHPQDAPTQAASSAPYTNHAANGGPYAPPTSRYGQLGTSSNGGMYGYPGTTYGGAGAYGRYNSGSMYGSSSLYGSGYGAGSMYGTPSMYGGMGGMYGGGYGYGGRGGMYGSMHGGGMGGEGSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAETAGNVLGQLTARPARLLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLRKVGRWVKAGDTRRDVALAAAAGAMVGAGGRGGRGQLQPYLPPSPPPQAWSARRPMPGEGGERRWGGGGRGEEHVEGLPNAALEQAFHSSSGGGVRPGEI 462
            MAPLPSSLRQPPPSARSDSASTLTPRGQAPNTNGPTILNPSTSHLSRASPLKPWEQSARRVMTANTAGHAGGNERPQGNGLSHTPREAVNYRTTNPNPARNVGSISHTTGSSSTRSLAGGVKGQGNGEEDFQDRSSAQLSELGHPQDAPTQAASSAPYTNHAANGGPYAPPTSRYGQLGTSSNGGMYGYPGTTYGGAGAYGRYNSGSMYGSSSLYGSGYGAGSMYGTPSMYGGMGGMYGGGYGYGGRGGMYGSMHGGGMGGEGSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAETAGNVLGQLTARPARLLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLRKVGRWVKAGDTRRDVALAAAAGAMVGAGGRGGRGQLQPYLPPSPPPQAWSARRPMPGEGGERRWGGGGRGEEHVEGLPNAALEQAFHSSSGGGVRPGEI
Sbjct:    1 MAPLPSSLRQPPPSARSDSASTLTPRGQAPNTNGPTILNPSTSHLSRASPLKPWEQSARRVMTANTAGHAGGNERPQGNGLSHTPREAVNYRTTNPNPARNVGSISHTTGSSSTRSLAGGVKGQGNGEEDFQDRSSAQLSELGHPQDAPTQAASSAPYTNHAANGGPYAPPTSRYGQLGTSSNGGMYGYPGTTYGGAGAYGRYNSGSMYGSSSLYGSGYGAGSMYGTPSMYGGMGGMYGGGYGYGGRGGMYGSMHGGGMGGEGSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAETAGNVLGQLTARPARLLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLRKVGRWVKAGDTRRDVALAAAAGAMVGAGGRGGRGQLQPYLPPSPPPQAWSARRPMPGEGGERRWGGGGRGEEHVEGLPNAALEQAFHSSSGGGVRPGEI 462          
BLAST of EWM21386.1 vs. NCBI_GenBank
Match: gi|635364329|emb|CCI47219.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 67.3958 bits (163), Expect = 3.567e-8
Identity = 80/262 (30.53%), Postives = 111/262 (42.37%), Query Frame = 0
Query:  122 KGQGNGEEDFQDRSSAQLSELGHPQDAPTQAASSAP----YTNHAANGGPYAPPTSRYGQLGTSSNGGMYGYPGT-----TYGGAGAYGRYNSGSMYGSSSLYGSGY---GAGSMYGTPSMYGGMGGMYGGGYGYGGRGGMYGSMHGGGMGGEGSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAETAGN----VLGQLTARPARLLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSY--LAWRVLRKV 365
            + Q + E + ++ S+  LS L    +A  +  ++ P    ++ + A         + Y     ++N G YGY G      TYGG                  YGSGY   GAG+  G  S Y   G M+ G  GYG   G  G   G          WL    H VS++GQ+TELLGMN EAL +  G+ + F E  G     +L  L  R    L+  Q     EE   R ++ K VR V     LAL Y    WR ++K+
Sbjct:   28 RAQNDHENNARNVSTTSLSYLNSSTNASERLNTTNPPPPIFSQYGATFPSTITQPNIYESSTCNANVGPYGYSGMGSYNPTYGG------------------YGSGYSTYGAGNP-GFHSAYPRYGSMFSGNGGYGASFGRSGPEPGFPFK------WLTTFNHTVSAIGQVTELLGMNAEALQFCIGSFVHFIERIGFMSSGMLKLLAPRTDLPLDHPQYA---EEEGKRLRRVKTVRTVIGITILALVYKFYRWRSVKKL 261          
BLAST of EWM21386.1 vs. NCBI_GenBank
Match: gi|325189976|emb|CCA24459.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 65.0846 bits (157), Expect = 5.149e-8
Identity = 87/280 (31.07%), Postives = 126/280 (45.00%), Query Frame = 0
Query:  122 KGQGNGEEDFQDRSSAQLSELGHPQDAPTQAASSAPYTNHAANGGPYA-PPTSRYG-QLGTSSNGGMYGYPGTTYGGAGAYGRYNSGSMYGSSSLYGSGYGA--GSMYGTPSMYGGMGGMYGGGYGYGGRGGMYGSMHGGGMGGE-------GSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAETAG----NVLGQLTARPARLLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLR-KVGRWVKAGDTRRDVALAAAAG 385
            + Q + +   ++  SA +S          + ++S    +H+    P A P  S YG     ++N G YGY G         G YNS   YG+   YGSG+ A   +  G  S Y   G M+ G    GG G MY    G G G            GWL    H VS++GQ+TELLGMN EAL +  G+ + F E  G     +L  L  R    L+  Q    EE      K+ + VR VR  +G+ L  L +++ R + G+ +K   TR ++++A   G
Sbjct:   17 RAQNDRDASARNAPSASISLPNQSTSTSERLSNSTATLSHSGAAIPTAFPQPSVYGPNAFDTTNLGPYGYSGM--------GSYNS--TYGA---YGSGFSAPASNNPGYNSAYPRYGSMFSGN---GGYGSMYSGAGGYGAGLGRPGPEPGFPFGWLSTFNHTVSAIGQVTELLGMNAEALQFCIGSFVHFIERIGLMSSGMLKLLAPRTDVPLDHPQYAEEEE------KRLRRVRTVRTVIGITLLALIYKLCRWRSGKQLKV--TRPEISVADLDG 272          
BLAST of EWM21386.1 vs. NCBI_GenBank
Match: gi|1173928050|gb|OQR81765.1| (hypothetical protein THRCLA_11426 [Thraustotheca clavata])

HSP 1 Score: 63.929 bits (154), Expect = 8.834e-8
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 0
Query:  259 MGGEGSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAE----TAGNVLGQLTARPAR---LLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLRKV 365
            M   GS+GWL +    V ++GQ+T+LLGMN EAL + FG  + F E     A + +  L+ +P         G+   TEEEA  R ++   VRVV++ V +   Y+  + ++K+
Sbjct:  140 MDPNGSLGWLASFNQTVGAIGQITQLLGMNAEALNFCFGNFVHFMERMAFMATSAVAMLSPKPVFPPGHPRYGEPPETEEEAKSRLRR---VRVVKFLVSVLTIYILHKSIQKL 250          
BLAST of EWM21386.1 vs. NCBI_GenBank
Match: gi|970640790|gb|KUF83193.1| (Anoctamin-6 [Phytophthora nicotianae])

HSP 1 Score: 65.855 bits (159), Expect = 1.176e-7
Identity = 49/136 (36.03%), Postives = 67/136 (49.26%), Query Frame = 0
Query:  263 GSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAETAGNVLGQLTAR-------PARLLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLRKVGRWVKAGDTRRDVALAAAAGAMVGAG 391
            G +GWL +   +VSS+GQ+TELLGMN EAL +  G+ + F E  G +   + A        P      G+  VTEEE   R ++   VR+ ++ V +A    A  VL K  RWV    +R    L  A    VG G
Sbjct:  171 GGLGWLNSFNQIVSSIGQITELLGMNAEALNFCIGSFVHFLERIGAMCAGIAAMLAPRPTFPPGHPRHGEPPVTEEEEKSRLRR---VRIFQFMVSMA----ALTVLYKGLRWVMRLRSRTTQKLLVAP-PTVGMG 298          
BLAST of EWM21386.1 vs. NCBI_GenBank
Match: gi|675181715|ref|XP_008899742.1| (hypothetical protein PPTG_07326 [Phytophthora parasitica INRA-310] >gi|566031802|gb|ETI54713.1| hypothetical protein F443_02515 [Phytophthora parasitica P1569] >gi|567969491|gb|ETK94578.1| hypothetical protein L915_02390 [Phytophthora parasitica] >gi|568027096|gb|ETM01063.1| hypothetical protein L917_02287 [Phytophthora parasitica] >gi|568057579|gb|ETM54240.1| hypothetical protein L914_02388 [Phytophthora parasitica] >gi|568100442|gb|ETN15141.1| hypothetical protein PPTG_07326 [Phytophthora parasitica INRA-310] >gi|570335526|gb|ETO83474.1| hypothetical protein F444_02505 [Phytophthora parasitica P1976] >gi|570959584|gb|ETP24563.1| hypothetical protein F441_02455 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 63.5438 bits (153), Expect = 1.614e-7
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 0
Query:  263 GSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAETAGN----VLGQLTARPAR---LLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLRKVGRWVKAGDTRRDVALAAA 383
            G +GWL +   +VSS+GQ+TELLGMN EAL +  G+ + F E  G     +   L  RP         G+  VTEEE   R ++   VR+ ++ V +A    A  VL K  RWV    +R    L  A
Sbjct:  171 GGLGWLNSFNQIVSSIGQITELLGMNAEALNFCIGSFVHFLERIGAMCAGIAAMLAPRPTFPPGHPRHGEPPVTEEEEKSRLRR---VRIFQFMVSMA----ALTVLYKGLRWVMRLRSRTTQKLLVA 291          
BLAST of EWM21386.1 vs. NCBI_GenBank
Match: gi|673025268|ref|XP_008866595.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|673025270|ref|XP_008866596.1| hypothetical protein H310_04163 [Aphanomyces invadans] >gi|574478161|gb|ETW05157.1| hypothetical protein H310_04163 [Aphanomyces invadans] >gi|574478162|gb|ETW05158.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 63.1586 bits (152), Expect = 1.862e-7
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 0
Query:  259 MGGEGSIGWLQNVFHLVSSLGQMTELLGMNTEALGYLFGTLMGFAE----TAGNVLGQLTARPAR---LLEAGQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLR 363
            M   G +GWL +    VS++GQ+T++LGMN E+L + FG+ + F E       N +  L+ +P         G+   TE+E   R ++   VRVV++   L   Y A RV R
Sbjct:  135 MDPNGHMGWLVSFNQTVSAIGQITQVLGMNAESLNFCFGSFVHFMERMAFLTTNAVAMLSPKPVFPPGHPRYGEPPETEDEIKSRLRR---VRVVKFLFSLVAIYAASRVAR 243          
The following BLAST results are available for this feature:
BLAST of EWM21386.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585101603|gb|EWM21386.1|0.000e+0100.00hypothetical protein Naga_100215g11 [Nannochlorops... [more]
gi|635364329|emb|CCI47219.1|3.567e-830.53unnamed protein product [Albugo candida][more]
gi|325189976|emb|CCA24459.1|5.149e-831.07conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173928050|gb|OQR81765.1|8.834e-834.21hypothetical protein THRCLA_11426 [Thraustotheca c... [more]
gi|970640790|gb|KUF83193.1|1.176e-736.03Anoctamin-6 [Phytophthora nicotianae][more]
gi|675181715|ref|XP_008899742.1|1.614e-736.72hypothetical protein PPTG_07326 [Phytophthora para... [more]
gi|673025268|ref|XP_008866595.1|1.862e-733.93hypothetical protein, variant [Aphanomyces invadan... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9316rna9316Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications