rna9313, rna9313 (mRNA) Nannochloropsis gaditana

Overview
Namerna9313
Unique Namerna9313
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2456
Alignment locationKK037252.1:357821..359572 -

Link to JBrowse

Properties
Property NameValue
ProductAdaptin ear-binding coat-associated protein 1 NECAP-1
Orig transcript idgnl|cribi|Naga_100215g8.1634.mrna
Orig protein idgnl|cribi|Naga_100215g8.1634
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:357821..359572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100215g8gene9029Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21392.1cds9283Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9313rna9313-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9313 ID=rna9313|Name=rna9313|organism=Nannochloropsis gaditana|type=mRNA|length=2456bp
TTTTGGGTAGGCCGCAGTATTGTCGTGATCGGTGGGGGCAGGGCAATCCA
CGCGCGGGTTTGGACAAGCTCACTTTTAAAAAAAATCCTGAGTGCAATGA
AAGTGTGTTGTTCAACATTGCTGCACTTGTGGCTCATGTAGAATATATGT
ATGCCCTCAGTTGGATAGAATGGGGCCCTTTGTTAATCTGTGGAGACGCG
CCTTGTGAGTTGGTGAAGAATCCGTCGAGTCGCCACCCCTCACGTGTTTC
CTTTATTTAATCATTGACCAACAGCCATCAAAGCATCATGATGTCCTCCA
AGGCCTTTGCCAGCAGCTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACT
TGGGCATTCGTGCCTCGTCAGCTTACCCGTACACCCCTGCAGCAGCGTGG
CCAAGGCCGCCTGCATATGGCCTTGCCCGGCAACGCTATGGCCTCCTTGG
GCCTCCTTTTGACTGCGTCCACGGGCCTCTACGCGCCTTCCTCCCCTCCC
CCTTCCTTCCACAACCAAGCCTTCACCAGCACCACCCTCTCGAAGGAAGT
CGAGAGCCGCCAGGGCATGTACAAAGAGTACACGGTCGAGAAAACGGGGC
AACAGTACGAAAACGCAGAGGGGACCTTCAAGACGAAAGATGAGACGGCA
GGGAACAAGAATAAATACGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAG
CTGCGTCATTCCCATGGCCCAATATTTCTGGTATGTCAAGGACGATTAAG
TCTTCCATCCTGAGTCCTCATCCCTGGACGGAGTGGGTCGAAATTGCATC
ATCGACGAGGCGATGGCGTCAGCTTCATCCGCGGAAACAATCTCTCCCAA
TTTTTCCTTCGTCGCCTTTGTTGATGGATACACGTCCGTACTCATCAGTA
GTGATCCCTTCAGTGCGATTGGGCATGGGGCATGATGGAAAAAGAAGGCT
TGAAGTAACGCCCTTCAGGGTGCCGATTGGATGGGGAAAGAATTTTTCGA
ATAAAACACAAAAAGTTGAAAATAGACGAGGCAAAAGATGTGCTGTACTT
CCTAGAAATGATGAGAGATTGTAGGAAGATGTTATGTTTTACTTCCTTTC
TAGGATAGGAAATGCCCAATATCCTTTCGAAGAACGTTTCTTTAAAATGA
GCCATCCACAATTATCATCACAGTATTATTCTGAGCGTTTTATACGTTTA
CATACGTTTACACTCAATGCCTCAAGCACGTGTGTCACGGTAGGGCTTCA
GGTTTGAAAAAGGCTTGTTATGTTCCCATGATTAACCTCCTACCTTCAAG
TTGTAGCACAAACAAGCTTTCGATAGGCTGCACTCCTTGTTGCTGATGCT
ACCCATTATGCCCTACTATCGGTGCTTATTCATGCCGCGTATGCGTTTGT
ACACGGATTTGTACGCGCCTTGGTGGTTGATGCATGTCTCGCGGAGGTAC
CGTCTTTGTCGCGAGGGATTGGTCAGGCTATGGCCGCTCCCGTGCTTTTC
TGACAGCAACCGTCATTCGAGCAAGAATTAAGAATTTGTCCGAAACAGCC
TCATCCAAAGGAAATGTTCTTACAACTCGTCCGCGTTTTCTCAACAAGGT
GTGTACATGGCCCTCATGGAAACTCCGGATCATTCGATGAGTTCGAATGA
AGCGCTTTCCTCCGTAGACAGCACCTTGAAGCGTCTCCAAAACCTAAAAA
ATGTACAACAAGTCCTTGTATTGACCAAGGATGGCGTCGCCCTGCACTCA
AGCGTCGATCAGAAGAAAACGGCGCATCAAGCTTCATTGATAGCATGCCT
CTGCGATCAAGCAAGTGCGCTGATGAAATCCTTCGATGACAGCGGGAAAG
GCGGTGTCGATGCGGATGAATGCCCACGGCTTCTACGCTTCTGCAGCCAG
AGGCAGGAAATTATGATCACACCGGGGAAGGACTTCTCCTTGGTTGTGCT
CCGGAAGTTGAATGGATGAACTGCAGACGTTGCATGCCTGTCGAGGGATC
GGCTTGTCCCGCCCGAGGGGGCGGGGGGGGCGATGGGGTGTGAAGCAGGG
ATGGAGGGAGGAGGTTGTCCAGTGTAGGCGGCAGGTAGAAGTAATGAAAA
GAGGGGAAACAGCGCCCTATCATGGACTAAGAAAATGCGCGTTGTCGACC
TGGACCAGAGCCGGACAAAGAAGAATCCGAACGACGGGGGAGGGGGGAGC
AGGACAAGGGCGAGTGGAATTAGAGCGTGAGACGCGAACGGTGACAGCCA
GGCGTCCCCAGGGGAACGTTGTGTGCTGTACCTATGATATTTCACGGAAA
CGGGTCAGCAAAATTCCACAGGCCGGAAGTCTGTCAGCCGCGGGGGCAGG
ATAAATCAAGCATGTACAGCATTTTTTTTTTAAACAGGGAAAGAATGACC
GAAAAAGCTCGCACTGTCGCGGAAAAGAACCTCGTTCCCACCTTTCTGGC
GCCTGG
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protein sequence of rna9313

>rna9313-protein ID=rna9313-protein|Name=rna9313|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MSDAADSLSSSPLGPTLPPNATSPPSRASSPPSITDDTAPPVEQLRLHLR
EVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPD
HTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGF
RERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETG
DVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGE
RKEVGRRKHRAGSSELYPGENVRPPSLLPLPPKAMPRRPTDLSVPATQVP
VEVPEEEWGDFVGRAEGEGGVKRNRRCDAKRRRGTIHGHTFAAPGARKVG
TRFFSATVRAFSVILSLFKKKMLYMLDLSCPRG
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mRNA from alignment at KK037252.1:357821..359572-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9313 ID=rna9313|Name=rna9313|organism=Nannochloropsis gaditana|type=mRNA|length=1752bp|location=Sequence derived from alignment at KK037252.1:357821..359572- (Nannochloropsis gaditana)
CCTTTTCTTGGTGAAGGCATTCGCTTCAGTAGGTGACATGTATACACTAT
AAAAGCTCCTGGAGTCATCTTCACAAATGTTTTGAAAGCCCATCTTCCAC
TCGAGGACCACATATTAAAGAGTGGAGAGAACCTTTAACCTCCCCACCCT
GTTGACCTCAGGACCTCTGTGGGATTTTTCAGGACAAACTCATTCAGGGC
AGTGACCCGTCCTGGTTTAGGAGGATGTGCTCGTACTGCTTCTATGGCAA
CATTTGAAACTGTGTAACAGCAGGCGAAGTGGGGGATTTTTCATGATGTG
ACCCCTGTTTTTGTCAGACTGCGACATAACCCCTCCTAGCTCTTTTGTTG
TGCCAAGCCCGGTGGGGTGTTTCCCATCTTTTCCGCTTTTCCTCCGATCC
ATTAGCCCTCAACCAGTTCGAAAGCTTATATTCTACCCACTCAAGACAGA
GACACACCATGAGCGACGCTGCTGACTCCCTGTCTTCCTCTCCTCTCGGT
CCTACCCTGCCGCCCAACGCGACCTCCCCACCCTCCCGCGCTTCCTCCCC
TCCCTCCATCACCGACGATACCGCTCCTCCTGTCGAGCAATTGCGCCTGC
ATCTTCGCGAAGTCTTTGTGTACGCCGTGCCTCGCCTGGTTTCCTCCACA
GGGTATAGGGCGGAGGACCTGAACCTTCCCAACCCATTGTTGACTGGCTA
CCTCAAAGCATTCCAGCGGGGTGACACGGACCTGTTCCTCCGGATCTTCC
AGCCCGACCACACCCTGTTCGCAGAATGCCCCATCCATGTGTTGCCGGGG
AAGAAGGACCCATTGGGCAGCTTTTTCATTCCCGTCGTGGACTCCTCCAG
GTATTTCGTCGTCAAAGCTGTGGACCGGCGGCGGCACGCCTTCATCGCAA
TCGGATTCCGGGAGCGGAGCGATGCATTTGATCTCAAGGCGCTTCTGGAG
GACTTGGTCACGTACAATGCCAGGGCGGAGCTGGCGAGACGGAGGACCCA
GGCACTGGACTCACGGGCGGGGAGGCCGGATGATGGAAGTGGAAGGGAGG
AGACAGGGGATGTGGTGGGAACGGAGGACGGCAAGGAAGGGAAAGACGGG
GCGAACGGATCTTTTCTACCGGTTTTCCAAGATTTGAGTTTAAAAGAAGG
GGAGACTCTCAAATTGAATTTGGTGCATGCCCTGGAAAAAAAAGAAGGGG
AAGGAGAGAGGAAAGAGGTTGGGAGACGGAAACACCGGGCGGGCTCGTCC
GAGCTTTATCCAGGGGAAAACGTGCGTCCCCCGTCCCTCCTACCATTGCC
ACCGAAAGCCATGCCGCGCAGGCCGACGGATCTCTCCGTGCCAGCCACGC
AGGTCCCGGTGGAGGTCCCGGAGGAGGAATGGGGGGACTTTGTAGGGCGG
GCAGAGGGGGAGGGGGGGGTCAAGAGGAACAGACGGTGTGACGCAAAGAG
GAGAAGGGGAACGATACACGGGCATACGTTTGCCGCGCCAGGCGCCAGAA
AGGTGGGAACGAGGTTCTTTTCCGCGACAGTGCGAGCTTTTTCGGTCATT
CTTTCCCTGTTTAAAAAAAAAATGCTGTACATGCTTGATTTATCCTGCCC
CCGCGGCTGACAGACTTCCGGCCTGTGGAATTTTGCTGACCCGTTTCCGT
GAAATATCATAGGTACAGCACACAACGTTCCCCTGGGGACGCCTGGCTGT
CACCGTTCGCGTCTCACGCTCTAATTCCACTCGCCCTTGTCCTGCTCCCC
CC
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Coding sequence (CDS) from alignment at KK037252.1:357821..359572-

>rna9313 ID=rna9313|Name=rna9313|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at KK037252.1:357821..359572- (Nannochloropsis gaditana)
ATGAGCGACGCTGCTGACTCCCTGTCTTCCTCTCCTCTCGGTCCTACCCT
GCCGCCCAACGCGACCTCCCCACCCTCCCGCGCTTCCTCCCCTCCCTCCA
TCACCGACGATACCGCTCCTCCTGTCGAGCAATTGCGCCTGCATCTTCGC
GAAGTCTTTGTGTACGCCGTGCCTCGCCTGGTTTCCTCCACAGGGTATAG
GGCGGAGGACCTGAACCTTCCCAACCCATTGTTGACTGGCTACCTCAAAG
CATTCCAGCGGGGTGACACGGACCTGTTCCTCCGGATCTTCCAGCCCGAC
CACACCCTGTTCGCAGAATGCCCCATCCATGTGTTGCCGGGGAAGAAGGA
CCCATTGGGCAGCTTTTTCATTCCCGTCGTGGACTCCTCCAGGTATTTCG
TCGTCAAAGCTGTGGACCGGCGGCGGCACGCCTTCATCGCAATCGGATTC
CGGGAGCGGAGCGATGCATTTGATCTCAAGGCGCTTCTGGAGGACTTGGT
CACGTACAATGCCAGGGCGGAGCTGGCGAGACGGAGGACCCAGGCACTGG
ACTCACGGGCGGGGAGGCCGGATGATGGAAGTGGAAGGGAGGAGACAGGG
GATGTGGTGGGAACGGAGGACGGCAAGGAAGGGAAAGACGGGGCGAACGG
ATCTTTTCTACCGGTTTTCCAAGATTTGAGTTTAAAAGAAGGGGAGACTC
TCAAATTGAATTTGGTGCATGCCCTGGAAAAAAAAGAAGGGGAAGGAGAG
AGGAAAGAGGTTGGGAGACGGAAACACCGGGCGGGCTCGTCCGAGCTTTA
TCCAGGGGAAAACGTGCGTCCCCCGTCCCTCCTACCATTGCCACCGAAAG
CCATGCCGCGCAGGCCGACGGATCTCTCCGTGCCAGCCACGCAGGTCCCG
GTGGAGGTCCCGGAGGAGGAATGGGGGGACTTTGTAGGGCGGGCAGAGGG
GGAGGGGGGGGTCAAGAGGAACAGACGGTGTGACGCAAAGAGGAGAAGGG
GAACGATACACGGGCATACGTTTGCCGCGCCAGGCGCCAGAAAGGTGGGA
ACGAGGTTCTTTTCCGCGACAGTGCGAGCTTTTTCGGTCATTCTTTCCCT
GTTTAAAAAAAAAATGCTGTACATGCTTGATTTATCCTGCCCCCGCGGCT
GA
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Synonyms
Publications