EWM21392.1, cds9283 (CDS) Nannochloropsis gaditana

Overview
NameEWM21392.1
Unique Namecds9283
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:357963..359114 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21392.1
ProductAdaptin ear-binding coat-associated protein 1 NECAP-1
Orig transcript idgnl|cribi|Naga_100215g8.1634.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:357963..359114 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006897endocytosis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
IPR012466NECAP-1
Homology
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|585101609|gb|EWM21392.1| (Adaptin ear-binding coat-associated protein 1 NECAP-1 [Nannochloropsis gaditana])

HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0
Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 0
Query:    1 MSDAADSLSSSPLGPTLPPNATSPPSRASSPPSITDDTAPPVEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSELYPGENVRPPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDFVGRAEGEGGVKRNRRCDAKRRRGTIHGHTFAAPGARKVGTRFFSATVRAFSVILSLFKKKMLYMLDLSCPRG 383
            MSDAADSLSSSPLGPTLPPNATSPPSRASSPPSITDDTAPPVEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSELYPGENVRPPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDFVGRAEGEGGVKRNRRCDAKRRRGTIHGHTFAAPGARKVGTRFFSATVRAFSVILSLFKKKMLYMLDLSCPRG
Sbjct:    1 MSDAADSLSSSPLGPTLPPNATSPPSRASSPPSITDDTAPPVEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSELYPGENVRPPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDFVGRAEGEGGVKRNRRCDAKRRRGTIHGHTFAAPGARKVGTRFFSATVRAFSVILSLFKKKMLYMLDLSCPRG 383          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|299115520|emb|CBN75724.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.768 bits (273), Expect = 8.674e-24
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 0
Query:   42 VEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQP--------DHTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRR--RHAFIAIGFRERSDAFDLKALLEDLVTYNARAELA 176
            +EQ  L ++EVFVY VP L +S+G+RAE+  L NP+ TG LK  Q G+    LR+F+P           LFA+C + +  G+   L  +   V+DSSRYFV++  D+   RHA++ +GFRERS AFD KA+L+D V +  R + A
Sbjct:   55 IEQPLLTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKIAQVGNA-CCLRLFKPPPEGELGATPELFAQCEVRLDGGRT--LQVYVESVIDSSRYFVLRCEDKASGRHAYVGVGFRERSSAFDFKAVLDDFVRFLDRQKRA 196          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|1209687424|gb|OWR43171.1| (Adaptin ear-binding coat-associated protein 1 [Danaus plexippus plexippus])

HSP 1 Score: 103.219 bits (256), Expect = 6.143e-22
Identity = 92/273 (33.70%), Postives = 121/273 (44.32%), Query Frame = 0
Query:   43 EQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHT---LFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRR-RHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSELYPGENVRPPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDF 311
            E + L   EVFV+ +P   S+ GYRA D NL  P  TG ++   +GD DL +++   D T   LFA+CPI   PG           V DSSRYFVVK  D   R A+I +GF +RSD+FDL   L+D   +                          +E+ G+  GT D ++              D S KEGET+K+N+   + KK+G         R  RAG      G NV      P     +P  P+   VP       VP  EWGDF
Sbjct:    5 ESVLLVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVAKGD-DLIMKL--EDKTSGELFAKCPIDKYPGVA------LEAVTDSSRYFVVKIQDDNGRSAYIGLGFGDRSDSFDLNVALQDHFKW------------------------LRKEQEGE--GTADQQQ-------------MDFSFKEGETIKINM--KITKKDG-----SEASRPRRAG------GANVGGLLPPPPGGSKLPPPPSPQHVPTPAGTPAVPNTEWGDF 216          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|225710570|gb|ACO11131.1| (NECAP-like protein CG9132 [Caligus rogercresseyi])

HSP 1 Score: 102.449 bits (254), Expect = 1.496e-21
Identity = 87/274 (31.75%), Postives = 125/274 (45.62%), Query Frame = 0
Query:   42 VEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDH-TLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSELYPGENVR-PPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDFVG 313
            +E+  L   EV VY +P   ++ GYRA + +L  P  TG L+A  RG +   LR+   +   LFA CP+   PG      +    V+DSSRYFV+   D+ R A+I IGF +R+D+FDL  +L D   +  R E  +    + DS                    EDG   K            DLSLKEG+T  +N    + KK+G    + V +     G   L P  +    P + P P +     PTD SV +  +     +E+WG+F G
Sbjct:    4 IERCMLVKNEVHVYKIPPRSTARGYRAANWSLATPDWTGRLRAMARGKS-FELRLEDKNSGELFAACPVEQYPG------TSVEAVLDSSRYFVLCIQDKDRRAYIGIGFADRADSFDLNVVLHDHFKWIKRQEEEKAAVASGDS--------------------EDGTSSKPSL---------DLSLKEGQTFHIN----IPKKDG---VRSVSKNNKPGGGFILPPPSSSSGAPRIAPPPGETPVTSPTDPSVISRNLLDAEEDEDWGEFKG 234          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|225710250|gb|ACO10971.1| (NECAP-like protein CG9132 [Caligus rogercresseyi])

HSP 1 Score: 102.064 bits (253), Expect = 1.888e-21
Identity = 87/274 (31.75%), Postives = 125/274 (45.62%), Query Frame = 0
Query:   42 VEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDH-TLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSELYPGENVR-PPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDFVG 313
            +E+  L   EV VY +P   ++ GYRA + +L  P  TG L+A  RG +   LR+   +   LFA CP+   PG      +    V+DSSRYFV+   D+ R A+I IGF +R+D+FDL  +L D   +  R E  +    + DS                    EDG   K            DLSLKEG+T  +N    + KK+G    + V +     G   L P  +    P + P P +     PTD SV +  +     +E+WG+F G
Sbjct:    4 IERCMLVKNEVHVYKIPPRSTARGYRAANWSLATPDWTGRLRAMARGKS-FELRLEDKNSGELFAACPVEQYPG------TSVEAVLDSSRYFVLCIQDKDRRAYIGIGFADRADSFDLNVVLHDHFKWIKRQEEEKAAIASGDS--------------------EDGTSSKPSL---------DLSLKEGQTFHIN----IPKKDG---VRSVSKNNKPGGGFILPPPSSSSGAPRIAPPPGETPVTSPTDPSVISRNLLDAEEDEDWGEFKG 234          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|514689546|ref|XP_004992348.1| (hypothetical protein PTSG_06947 [Salpingoeca rosetta] >gi|326429725|gb|EGD75295.1| hypothetical protein PTSG_06947 [Salpingoeca rosetta])

HSP 1 Score: 102.064 bits (253), Expect = 2.799e-21
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 0
Query:   34 ITDDTAPPVEQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHT--LFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRRRHAFIAIGFRERSDAFDLKALLEDLV 167
            + DDT   +EQ++L LR+ FVY +P   S+ GYRA D  L  P+ TG +K   +G   L     Q + T  LFAE PI     + D +     PVVDSSRYFVV+  ++ RHAF+ +GF+ERS+AFD    L+D V
Sbjct:    1 MADDT---LEQVQLVLRQCFVYRLPPRPSTKGYRAADWGLDKPMWTGRVKVTTKGK--LCTITLQDNATGKLFAEAPI-----RGDEVAKVVEPVVDSSRYFVVRVENQGRHAFLGMGFQERSEAFDFNVALQDFV 126          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|925669266|gb|KOX67522.1| (hypothetical protein WN51_08954 [Melipona quadrifasciata])

HSP 1 Score: 96.6709 bits (239), Expect = 1.781e-19
Identity = 85/273 (31.14%), Postives = 122/273 (44.69%), Query Frame = 0
Query:   43 EQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRR-RHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSELYPGENVRPPSLLPLPPKAMPRRPTDLSVPATQVPVE---VPEEEWGDF 311
            E + L   EVFV+ +P   ++ GYRA D NL  P  TG ++   +GD+       +    LFA+CPI   PG          PV DSSRYFV++  D   R AFI +GF +RSD+FDL   L+D   +        R  + ++     P     ++E                          DL  KEGET+K+N+   + KK+G    +   + K RA ++   P     PP  + + P   P   T  S PA + PV+    P  EWG+F
Sbjct:    5 ESVLLVKSEVFVFKIPPRSTNRGYRAADWNLQEPTWTGRMRLVSQGDSITIKLEDKITGELFAKCPIEQYPGIA------VEPVTDSSRYFVLRIQDDNGRSAFIGVGFLDRSDSFDLNVALQDHFKW-------LRNQEQIEKEKDTP-----KQEL-------------------------DLRFKEGETIKINM--KITKKDGS---EVAAKTKQRANTNLGLPP----PPGGVKIAP---PPAKTPTSSPAHK-PVQNQNQPSSEWGEF 221          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|1059216041|ref|XP_017754825.1| (PREDICTED: NECAP-like protein CG9132 [Eufriesea mexicana] >gi|1026571134|gb|OAD58653.1| hypothetical protein WN48_10537 [Eufriesea mexicana])

HSP 1 Score: 96.2857 bits (238), Expect = 1.988e-19
Identity = 83/280 (29.64%), Postives = 120/280 (42.86%), Query Frame = 0
Query:   43 EQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDHTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRR-RHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEV-GRRKHRAGSSELYP----GENVRPPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDFVGRAE 316
            E + L   EVFV+ +P   ++ GYRA D NL  P  TG ++   +GD+       +    LFA+CPI   PG          PV DSSRYFV++  D   R AFI +GF +RSD+FDL   L+D   +        R  + ++    +P     ++E                          DL  KEGET+K+N+   + KK+G     EV  + K RA ++   P    G  + PP     P K     P    +P           EWG+F   ++
Sbjct:    5 ESVLLVKSEVFVFKIPPRSTNRGYRAADWNLQEPTWTGCMRLVSQGDSITIKLEDKVTRELFAKCPIEQYPGIA------VEPVTDSSRYFVLRIQDDNGRSAFIGVGFLDRSDSFDLNVALQDHFKW-------LRNQEQIEKEKDKP-----KQEL-------------------------DLRFKEGETIKINM--KITKKDGS----EVSAKTKQRANTNLGLPPPPGGVKIAPP-----PAKTPTSSPAHKPIPNQ----NQTSSEWGEFASASQ 226          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|695427210|ref|XP_009529625.1| (hypothetical protein PHYSODRAFT_316058 [Phytophthora sojae] >gi|348676058|gb|EGZ15876.1| hypothetical protein PHYSODRAFT_316058 [Phytophthora sojae])

HSP 1 Score: 96.6709 bits (239), Expect = 2.356e-19
Identity = 83/289 (28.72%), Postives = 131/289 (45.33%), Query Frame = 0
Query:   42 VEQLRLHLREVFVYAVP-RLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQP------------DHTLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRR--RHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEG--EGERKEVGRRKHRAGSSELYPGEN-VRPPSLLPLPPKAMPRRPTDLSVPATQVPVEVPEEEWGDFV 312
            +E+     + V+ Y VP   V+S   RA+  +  +P LTG ++  QRGD   F+++F+P              TLFA+CP+ +   ++  L  +    VDSSRYF+++  D +  R AF+ IGF +R+ AF+ KA L+D   Y  R +L   + +A                           E + G+ GS  P   DLSL +G T+++NL     K  G  +GER     R+  +G   + P +  + PP     P  A+            +    V +E+WGDF 
Sbjct:   10 LERALFSEKGVWFYQVPANQVTSLAPRADAWDPEHPFLTGSVRVVQRGDA-CFVQLFEPVAAEQDEAETAATPTLFAQCPLQIT--RELALDVYVHDCVDSSRYFMLRVEDEQSDRRAFVGIGFPDRTAAFNFKATLQDYAKYALR-QLEVEQVEA--------------------------AEQQTGSGGSSSPKKPDLSLPQGTTIRINL-----KTNGAEDGERAATRPRRSSSGGGAVSPAKVPLIPPPPGDSPSTAVKVPAIAPPPAVAEPTTAVDDEDWGDFT 263          
BLAST of EWM21392.1 vs. NCBI_GenBank
Match: gi|1173917420|gb|OQR77638.1| (NECAP-like protein [Tropilaelaps mercedesae])

HSP 1 Score: 96.2857 bits (238), Expect = 2.740e-19
Identity = 81/243 (33.33%), Postives = 110/243 (45.27%), Query Frame = 0
Query:   43 EQLRLHLREVFVYAVPRLVSSTGYRAEDLNLPNPLLTGYLKAFQRGDTDLFLRIFQPDH-TLFAECPIHVLPGKKDPLGSFFIPVVDSSRYFVVKAVDRR-RHAFIAIGFRERSDAFDLKALLEDLVTYNARAELARRRTQALDSRAGRPDDGSGREETGDVVGTEDGKEGKDGANGSFLPVFQDLSLKEGETLKLNLVHALEKKEGEGERKEVGRRKHRAGSSE-LYPGENVRPPSLLPLPP 282
            E + L   EVF+Y +P L ++ GY+A D  L  P  TG LK   +G TD  L++   +   LFA+CPI   PG           V DSSRYFVV+  D   R AFI +GF +RSD+FDL   L+D   +  +                       +EE  D V ++         N    P+  DL  KEG+T+K++      KK G G  +    R   AG+   L P     PP  + LPP
Sbjct:    5 ESVLLVKNEVFIYKIPPLTTNKGYKASDWRLDQPDWTGRLKLIAKG-TDCNLKLEDKNTGELFAKCPIEEYPGVA------IESVTDSSRYFVVRLKDDDGRTAFIGLGFADRSDSFDLNVALQDHFKWVHKT----------------------KEE--DAVASQ---------NNGLPPLALDLGFKEGQTIKISC--NFSKKTGSGGSRPRAERSAAAGAGGILLP----PPPGGVKLPP 201          
The following BLAST results are available for this feature:
BLAST of EWM21392.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101609|gb|EWM21392.1|0.000e+0100.00Adaptin ear-binding coat-associated protein 1 NECA... [more]
gi|299115520|emb|CBN75724.1|8.674e-2443.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|1209687424|gb|OWR43171.1|6.143e-2233.70Adaptin ear-binding coat-associated protein 1 [Dan... [more]
gi|225710570|gb|ACO11131.1|1.496e-2131.75NECAP-like protein CG9132 [Caligus rogercresseyi][more]
gi|225710250|gb|ACO10971.1|1.888e-2131.75NECAP-like protein CG9132 [Caligus rogercresseyi][more]
gi|514689546|ref|XP_004992348.1|2.799e-2144.12hypothetical protein PTSG_06947 [Salpingoeca roset... [more]
gi|925669266|gb|KOX67522.1|1.781e-1931.14hypothetical protein WN51_08954 [Melipona quadrifa... [more]
gi|1059216041|ref|XP_017754825.1|1.988e-1929.64PREDICTED: NECAP-like protein CG9132 [Eufriesea me... [more]
gi|695427210|ref|XP_009529625.1|2.356e-1928.72hypothetical protein PHYSODRAFT_316058 [Phytophtho... [more]
gi|1173917420|gb|OQR77638.1|2.740e-1933.33NECAP-like protein [Tropilaelaps mercedesae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9313rna9313Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications