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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100215g6.1630.mrna |
| Orig protein id | gnl|cribi|Naga_100215g6.1630 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:354646..358085 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9312 ID=rna9312|Name=rna9312|organism=Nannochloropsis gaditana|type=mRNA|length=2203bp
TGGGCTTTCCTTCATGCCAATCCATCAAAGCATCATGATGTCCTCCAAGG
CCTTTGCCAGCAGCTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACTTGG
GCATTCGTGCCTCGTCAGCTTACCCGTACACCCCTGCAGCAGCGTGGCCA
AGGCCGCCTGCATATGGCCTTGCCCGGCAACGCTATGGCCTCCTTGGGCC
TCCTTTTGACTGCGTCCACGGGCCTCTACGCGCCTTCCTCCCCTCCCCCT
TCCTTCCACAACCAAGCCTTCACCAGCACCACCCTCTCGAAGGAAGTCGA
GAGCCGCCAGGGCATGTACAAAGAGTACACGGTCGAGAAAACGGGGCAAC
AGTACGAAAACGCAGAGGGGACCTTCAAGACGAAAGATGAGACGGCAGGG
AACAAGAATAAATACGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAGCTG
CGTCATTCCCATGGCCCAATATTTCTGGTATGTCAAGGACGATTAAGTCT
TCCATCCTGAGTCCTCATCCCTGGACGGAGTGGGTCGAAATTGCATCATC
GACGAGGCGATGGCGTCAGCTTCATCCGCGGAAACAATCTCTCCCAATTT
TTCCTTCGTCGCCTTTGTTGATGGATACACGTCCGTACTCATCAGTAGTG
ATCCCTTCAGTGCGATTGGGCATGGGGCATGATGGAAAAAGAAGGCTTGA
AGTAACGCCCTTCAGGGTGCCGATTGGATGGGGAAAGAATTTTTCGAATA
AAACACAAAAAGTTGAAAATAGACGAGGCAAAAGATGTGCTGTACTTCCT
AGAAATGATGAGAGATTGTAGGAAGATGTTATGTTTTACTTCCTTTCTAG
GATAGGAAATGCCCAATATCCTTTCGAAGAACGTTTCTTTAAAATGAGCC
ATCCACAATTATCATCACAGTATTATTCTGAGCGTTTTATACGTTTACAT
ACGTTTACACTCAATGCCTCAAGCACGTGTGTCACGGTAGGGCTTCAGGT
TTGAAAAAGGCTTGTTATGTTCCCATGATTAACCTCCTACCTTCAAGTTG
TAGCACAAACAAGCTTTCGATAGGCTGCACTCCTTGTTGCTGATGCTACC
CATTATGCCCTACTATCGGTGCTTATTCATGCCGCGTATGCGTTTGTACA
CGGATTTGTACGCGCCTTGGTGGTTGATGCATGTCTCGCGGAGGTACCGT
CTTTGTCGCGAGGGATTGGTCAGGCTATGGCCGCTCCCGTGCTTTTCTGA
CAGCAACCGTCATTCGAGCAAGAATTAAGAATTTGTCCGAAACAGCCTCA
TCCAAAGGAAATGTTCTTACAACTCGTCCGCGTTTTCTCAACAAGGTGTG
TACATGGCCCTCATGGAAACTCCGGATCATTCGATGAGTTCGAATGAAGC
GCTTTCCTCCGTAGACAGCACCTTGAAGCGTCTCCAAAACCTAAAAAATG
TACAACAAGTCCTTGTATTGACCAAGGATGGCGTCGCCCTGCACTCAAGC
GTCGATCAGAAGAAAACGGCGCATCAAGCTTCATTGATAGCATGCCTCTG
CGATCAAGCAAGTGCGCTGATGAAATCCTTCGATGACAGCGGGAAAGGCG
GTGTCGATGCGGATGAATGCCCACGGCTTCTACGCTTCTGCAGCCAGAGG
CAGGAAATTATGATCACACCGGGGAAGGACTTCTCCTTGGTTGTGCTCCG
GAAGTTGAATGGATGAACTGCAGACGTTGCATGCCTGTCGAGGGATCGGC
TTGTCCCGCCCGAGGGGGCGGGGGGGGCGATGGGGTGTGAAGCAGGGATG
GAGGGAGGAGGTTGTCCAGTGTAGGCGGCAGGTAGAAGTAATGAAAAGAG
GGGAAACAGCGCCCTATCATGGACTAAGAAAATGCGCGTTGTCGACCTGG
ACCAGAGCCGGACAAAGAAGAATCCGAACGACGGGGGAGGGGGGAGCAGG
ACAAGGGCGAGTGGAATTAGAGCGTGAGACGCGAACGGTGACAGCCAGGC
GTCCCCAGGGGAACGTTGTGTGCTGTACCTATGATATTTCACGGAAACGG
GTCAGCAAAATTCCACAGGCCGGAAGTCTGTCAGCCGCGGGGGCAGGATA
AATCAAGCATGTACAGCATTTTTTTTTTAAACAGGGAAAGAATGACCGAA
AAAGCTCGCACTGTCGCGGAAAAGAACCTCGTTCCCACCTTTCTGGCGCC
TGG back to topprotein sequence of rna9312 >rna9312-protein ID=rna9312-protein|Name=rna9312|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNA
MASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTV
EKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYV
KDD back to topmRNA from alignment at KK037252.1:354646..358085+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9312 ID=rna9312|Name=rna9312|organism=Nannochloropsis gaditana|type=mRNA|length=3440bp|location=Sequence derived from alignment at KK037252.1:354646..358085+ (Nannochloropsis gaditana)
TTTTGGGTAGGCCGCAGTATTGTCGTGATCGGTGGGGGCAGGGCAATCCA
CGCGCGGGTTTGGACAAGCTcacttttaaaaaaaatccTGAGTGCAATGA
AAGTGTGTTGTTCAACATTGCTGCACTTGTGGCTCATGTAGAATATATGT
ATGCCCTCAGTTGGATAGAATGGGGCCCTTTGTTAATCTGTGGAGACGCG
CCTTGTGAGTTGGTGAAGAATCCGTCGAGTCGCCACCCCTCACGTGTTTC
CTTTATTTAATCATTGACCAACAGCCATCAAAGCATCATGAtgtcctcca
aggcctttgCCAGCAGCTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACT
TGGGCATTCGTGCCTCGTCAGCTTAGTAAGTAACTCGAGTGGGAGTTCCC
CATCATCCCAGTGGATGGAGCTGCAAGTAGATGCCATCACCAAACAAGCA
TGAAATATCGCACGGACCGAATACATGTCCACATAATGTTCATTAAATGG
AAGTGACAAGGCTGTAACGAAAACGACCCAAGGTCCTCAACaaatccttt
ttccccttctccattttctttcccacaGCCCGTACACCCCTGCAGCagcg
tggccaaggccgcctgcATATGGCCTTGCCCGGCAACGCTATGGGTACGT
CGCGTCGAAAGTTGCAAAGAAGAtcgtgtcttcctcctcggaccagggct
gggaaagggagatgaaagaaataccaaaggggcaggggccccGTGGAGGT
TGCGTGACGTGACGAAGGACAGAGCGGCCTTCGGTGCCTCGCTTGTCCTG
TTCACAGATAACCTCACCTACTCCACCCTGCAtatttctcgccctcctgc
ctccttcttgacaGCCTCCTTGGGCCTCCTTTTGACTGCGTCCACGGGCC
TCTacgcgccttcctcccctcccccttccttccacaacCAAGCCttcacc
agcaccaccctcTCGAAGGAAGTCGAGAGCCGCCAGGGCATGTACAAAGA
GTACACGGTCGAGAAAACGGGGCAACaggtggggcagggagggacagagg
gagcaaaagagggatgggcgtggagggagactgGCTATCAAGCGGCGTTA
TCCGAGTCGTGCTTATAACCATGCATGTGCAGTACGAAAACGCAGAGGGG
ACCTTCAAGACGAAAGATGAGACGGCAGGGAACAAGAATAAATACGTGGC
TATCTTGGCGGTCCTCCTGGTGGTAAGTGCGGAGATATCTCTCTTTGTCg
gatgggaagaaagaggactTCCGGGGAGAATGTGCTCGTTTGAAAGCTTC
GCCGTAACACGGAGCTCTTCGTGCGAGGCGTGACACGACCGCGTCAAGGA
ATCATCTGCCCCTCCAACACTTTTAACCGATCTCTTTCTGTAGGGAAGCT
GCGTCATTCCCATGGCCCAATATTTCTGGTATGTCAAGGACGATTAAGTC
TTCCATCCTGAGTCCTCATCCCTGGACGGAGTGGGTCGAAATTGCATCAT
CGACGAGGCGATGGCGTCAGCTTCATCCGCGGAAACAATCTCTCCCAATT
TTTCCTTCGTCGCCTTTGTTGATGGATACACGTCCGTACTCATCAGTAGT
GATCCCTTCAGTGCGATTGGGCATGGGGCAtgatggaaaaagaaggcttG
AAGTAACGCCCTTCAGGGTGCCGATTGGATGGGGAAAGAATTTTTCGAAT
AAAACACAAAAAGTTGAAAATAGACGAGGCAAAAGATGTGCTGTACTTCC
TAGAAATGATGAGAGATTGTAGGAAGATGTTATGTTTTACTTCCTTTCTA
GGATAGGAAATGCCCAATATCCTTTCGAAGAACGTTTCTTTAAAATGAGC
CATCCACAATTATCATCACAGTATTATTCTGAGCGTTTTATACGTTTACA
TACGTTTACACTCAATGCCTCAAGCACGTGTGTCACGGTAGGGCTTCAGG
TTTGAAAAAGGCTTGTTATGTTCCCATGATTAACCTCCTACCTTCAAGTT
GTAGCACAAACAAGCTTTCGATAGGCTGCACTCCTTGTTGCTGATGCTAC
CCATTATGCCCTACTATCGGTGCTTATTCATGCCGCGTATGCGTTTGTAC
ACGGATTTGTACGCGCCTTGGTGGTTGATGCATGTCTCGCGGAGGTACCG
TCTTTGTCGCGAGGGATTGGTCAGGCTATGGCCGCTCCCGTGCTTTTCTG
ACAGCAACCGTCATTCGAGCAAGAATTAAGAATTTGTCCGAAACAGCCTC
ATCCAAAGGAAATGTTCTTACAACTCGTCCGCGTTTTCTCAACAAGGTGT
GTACATGGCCCTCATGGAAACTCCGGATCATTCGATGAGTTCGAATGAAG
CGCTTTCCTCCGTAGACAGCACCTTGAAGCGTCTCCAAAACCTAAAAAAT
GTACAACAAGTCCTTGTATTGACCAAGGATGGCGTCGCCCTGCACTCAAG
CGTCGATCAGGTAGGTCGCTGTTAATTTAATCCCCCTCAGATCCCTCAAT
GCTTTCAGCCACGCGATGCTTGAAGCCTGTCTCGGACGTGGTGCCTCGTC
TCCCCGCATGCATGTGCGCTTGATCTCTTCTATACCTTTCATGGTCCCTT
GCGACAGGATGCTCACAAAAGTGCTGGTTCCAGTCGTTTTCTTATTTTTT
GGTGCTGGTAATCATTCTACTTTCCAAGTTATGTTTGTCAGCTCATTTTT
CACATCCTGCGTGCTCCGTTTCCTGTACTGCACTCATGATTCACAGAAGA
AAACGGCGCATCAAGCTTCATTGATAGCATGCCTCTGCGATCAAGCAAGT
GCGCTGATGAAATCCTTCGATGACAGCGGGAAAGGCGGTGTCGATGCGGA
TGAATGCCCACGGCTTCTACGCTTCTGCAGCCAGAGGCAGGAAATTATGA
TCACACCGGGGAAGGACTTCTCCTTGGTTGTGCTCCGGAAGTTGAATGGA
TGAACTGCAGACGTTGCATGCCTGTCGAGGGATCGGCTTGTCCCGcccga
gggggcggggggggcgatggGGTGTGAagcagggatggagggaggaggtt
gtccaGTGTAGGCGGCAGGTAGAAGTAatgaaaagaggggaaacaGCGCC
CTATCATGGACTAAGAAAATGCGCGTTGTCGACCTGGACCAGAGCCGGAC
AAAGAAGAATCCGaacgacgggggaggggggagcaggaCAAGGGCGAGTG
GAATTAGAGCGTGAGACGCGAACGGTGACAGCCAGGCGTCCCCAGGGGAA
CGTTGTGTGCTGTACCTATGATATTTCACGGAAACGGGTCAGCAAAATTC
CACAGGCCGGAAGTCTGTCAGCCGCGGGGGCAGGATAAATCAAGCATGTa
cagcattttttttttaaacaGGGAAAGAATGACCGAAAAAGCTCGCACTG
TCGCGGAAAAGAACCTCGTTCCCACCTTTCTGGCGCCTGG back to topCoding sequence (CDS) from alignment at KK037252.1:354646..358085+ >rna9312 ID=rna9312|Name=rna9312|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at KK037252.1:354646..358085+ (Nannochloropsis gaditana)
ATGAtgtcctccaaggcctttgCCAGCAGCTTGCTGATCTTAAGCTTCCT
TTTTGCAAGCACTTGGGCATTCGTGCCTCGTCAGCTTACCCGTACACCCC
TGCAGCagcgtggccaaggccgcctgcATATGGCCTTGCCCGGCAACGCT
ATGGCCTCCTTGGGCCTCCTTTTGACTGCGTCCACGGGCCTCTacgcgcc
ttcctcccctcccccttccttccacaacCAAGCCttcaccagcaccaccc
tcTCGAAGGAAGTCGAGAGCCGCCAGGGCATGTACAAAGAGTACACGGTC
GAGAAAACGGGGCAACagTACGAAAACGCAGAGGGGACCTTCAAGACGAA
AGATGAGACGGCAGGGAACAAGAATAAATACGTGGCTATCTTGGCGGTCC
TCCTGGTGGGAAGCTGCGTCATTCCCATGGCCCAATATTTCTGGTATGTC
AAGGACGATTAAATGAtgtcctccaaggcctttgCCAGCAGCTTGCTGAT
CTTAAGCTTCCTTTTTGCAAGCACTTGGGCATTCGTGCCTCGTCAGCTTA
CCCGTACACCCCTGCAGCagcgtggccaaggccgcctgcATATGGCCTTG
CCCGGCAACGCTATGGCCTCCTTGGGCCTCCTTTTGACTGCGTCCACGGG
CCTCTacgcgccttcctcccctcccccttccttccacaacCAAGCCttca
ccagcaccaccctcTCGAAGGAAGTCGAGAGCCGCCAGGGCATGTACAAA
GAGTACACGGTCGAGAAAACGGGGCAACagTACGAAAACGCAGAGGGGAC
CTTCAAGACGAAAGATGAGACGGCAGGGAACAAGAATAAATACGTGGCTA
TCTTGGCGGTCCTCCTGGTGGGAAGCTGCGTCATTCCCATGGCCCAATAT
TTCTGGTATGTCAAGGACGATTAAATGAtgtcctccaaggcctttgCCAG
CAGCTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACTTGGGCATTCGTGC
CTCGTCAGCTTACCCGTACACCCCTGCAGCagcgtggccaaggccgcctg
cATATGGCCTTGCCCGGCAACGCTATGGCCTCCTTGGGCCTCCTTTTGAC
TGCGTCCACGGGCCTCTacgcgccttcctcccctcccccttccttccaca
acCAAGCCttcaccagcaccaccctcTCGAAGGAAGTCGAGAGCCGCCAG
GGCATGTACAAAGAGTACACGGTCGAGAAAACGGGGCAACagTACGAAAA
CGCAGAGGGGACCTTCAAGACGAAAGATGAGACGGCAGGGAACAAGAATA
AATACGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAGCTGCGTCATTCCC
ATGGCCCAATATTTCTGGTATGTCAAGGACGATTAAATGAtgtcctccaa
ggcctttgCCAGCAGCTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACTT
GGGCATTCGTGCCTCGTCAGCTTACCCGTACACCCCTGCAGCagcgtggc
caaggccgcctgcATATGGCCTTGCCCGGCAACGCTATGGCCTCCTTGGG
CCTCCTTTTGACTGCGTCCACGGGCCTCTacgcgccttcctcccctcccc
cttccttccacaacCAAGCCttcaccagcaccaccctcTCGAAGGAAGTC
GAGAGCCGCCAGGGCATGTACAAAGAGTACACGGTCGAGAAAACGGGGCA
ACagTACGAAAACGCAGAGGGGACCTTCAAGACGAAAGATGAGACGGCAG
GGAACAAGAATAAATACGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAGC
TGCGTCATTCCCATGGCCCAATATTTCTGGTATGTCAAGGACGATTAAAT
GAtgtcctccaaggcctttgCCAGCAGCTTGCTGATCTTAAGCTTCCTTT
TTGCAAGCACTTGGGCATTCGTGCCTCGTCAGCTTACCCGTACACCCCTG
CAGCagcgtggccaaggccgcctgcATATGGCCTTGCCCGGCAACGCTAT
GGCCTCCTTGGGCCTCCTTTTGACTGCGTCCACGGGCCTCTacgcgcctt
cctcccctcccccttccttccacaacCAAGCCttcaccagcaccaccctc
TCGAAGGAAGTCGAGAGCCGCCAGGGCATGTACAAAGAGTACACGGTCGA
GAAAACGGGGCAACagTACGAAAACGCAGAGGGGACCTTCAAGACGAAAG
ATGAGACGGCAGGGAACAAGAATAAATACGTGGCTATCTTGGCGGTCCTC
CTGGTGGGAAGCTGCGTCATTCCCATGGCCCAATATTTCTGGTATGTCAA
GGACGATTAA back to top
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