EWM21388.1, cds9282 (CDS) Nannochloropsis gaditana

Overview
NameEWM21388.1
Unique Namecds9282
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:354933..355020 +
Alignment locationKK037252.1:355224..355289 +
Alignment locationKK037252.1:355510..355673 +
Alignment locationKK037252.1:355778..355867 +
Alignment locationKK037252.1:356039..356092 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21388.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100215g6.1630.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:354933..355020 +
KK037252.1supercontigKK037252.1:355224..355289 +
KK037252.1supercontigKK037252.1:355510..355673 +
KK037252.1supercontigKK037252.1:355778..355867 +
KK037252.1supercontigKK037252.1:356039..356092 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|553187891|ref|XP_005854700.1| (hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526] >gi|422294356|gb|EKU21656.1| hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526] >gi|585101605|gb|EWM21388.1| hypothetical protein Naga_100215g6 [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 5.357e-110
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD
Sbjct:    1 MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|585101604|gb|EWM21387.1| (hypothetical protein Naga_100215g6 [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 5.365e-110
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD
Sbjct:    8 MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|219109945|ref|XP_002176725.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411260|gb|EEC51188.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.3521 bits (220), Expect = 9.902e-20
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   68 SSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            S+P        F+S+ +  E  +R+GMY EYT +   Q Y++A  TFK   ET   K KY A+LAVL+VGS +IPMAQYFWYV+DD
Sbjct:   53 SAPAADALTPVFSSSNVVAEKVTREGMYGEYTTDLV-QTYDDARSTFKDAKETKSKKGKYTALLAVLIVGSFIIPMAQYFWYVRDD 137          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|223999747|ref|XP_002289546.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974754|gb|EED93083.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 88.9669 bits (219), Expect = 1.768e-19
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query:   79 FTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            F S+ L  E  +R+G+Y+EY V+   Q +++A  T+K+  ET   K KY A++AVL+VGS +IPMAQYFWYVKDD
Sbjct:   68 FGSSNLVAERVTREGLYREYDVDVGDQVFDDARSTYKSAKETKTKKGKYTALIAVLVVGSFIIPMAQYFWYVKDD 142          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|1072236428|gb|OEU21156.1| (hypothetical protein FRACYDRAFT_206263 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 88.1965 bits (217), Expect = 3.252e-19
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   46 LPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAF-TSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            L  +A+ ++  +   S+ L  P     +   QAF +STT+  E   R+G+YKEY      Q  ++A  TFK+  ET   K KY AILA+L+VGS +IPMAQYFWYV+DD
Sbjct:   36 LKKHAVNTMAAIAIGSSVLTTPM-VADALETQAFFSSTTVVAEKVVREGIYKEYEAL-IDQDVDDARSTFKSAKETKSKKGKYTAILAILVVGSFIIPMAQYFWYVRDD 142          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|1210519388|dbj|GAX21772.1| (hypothetical protein FisN_31Lh061 [Fistulifera solaris])

HSP 1 Score: 87.0409 bits (214), Expect = 6.766e-19
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 0
Query:   70 PPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            PP +    AF +  L+++V  R+G+Y EY ++   Q+Y++A  TFK+  ET   K KY A+LA+L+VGS +IPMAQY+WYVKDD
Sbjct:   55 PPAANAVPAFPTQVLAEKV-IREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDD 137          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|397647573|gb|EJK77761.1| (hypothetical protein THAOC_00385 [Thalassiosira oceanica])

HSP 1 Score: 85.8853 bits (211), Expect = 2.265e-18
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   79 FTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            F S++L  E   R+G+Y EY V+   Q Y++A   FK+  ET   K KY A++AVL+VGS +IPMAQYFWYV+DD
Sbjct:   67 FGSSSLVAERVKREGIYGEYEVDLGDQVYDDASSKFKSAKETKSKKGKYTALIAVLVVGSFIIPMAQYFWYVRDD 141          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|1210530526|dbj|GAX10853.1| (hypothetical protein FisN_31Hh061 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 2.372e-18
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 0
Query:   78 AFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            AF +  L+++V  R+G+Y EY ++   Q+Y++A  TFK+  ET   K KY A+LA+L+VGS +IPMAQY+WYVKDD
Sbjct:   62 AFPTQVLAEKV-IREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDD 136          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|299117489|emb|CBN73992.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 3.178e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0
Query:   89 ESRQGMYKEYTVEKTGQQYENAEG--TFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
            E+R+G+Y  Y VE   +  E   G  TFK K+ET   ++KY ++LAVLL GS VIPM QY+WY++DD
Sbjct:   88 ETREGLYGPYEVEVQERAPETDFGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDD 154          
BLAST of EWM21388.1 vs. NCBI_GenBank
Match: gi|397570730|gb|EJK47438.1| (hypothetical protein THAOC_33840, partial [Thalassiosira oceanica])

HSP 1 Score: 64.3142 bits (155), Expect = 2.376e-10
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query:   79 FTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMA 144
            F S++L  E   R+G+Y EY V+   Q Y++A   FK+  ET   K KY A++AVL+VGS +IPMA
Sbjct:   67 FGSSSLVAERVKREGIYGEYEVDLGDQVYDDASSKFKSAKETKSKKGKYTALIAVLVVGSFIIPMA 132          
The following BLAST results are available for this feature:
BLAST of EWM21388.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187891|ref|XP_005854700.1|5.357e-110100.00hypothetical protein NGA_0347602 [Nannochloropsis ... [more]
gi|585101604|gb|EWM21387.1|5.365e-110100.00hypothetical protein Naga_100215g6 [Nannochloropsi... [more]
gi|219109945|ref|XP_002176725.1|9.902e-2050.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223999747|ref|XP_002289546.1|1.768e-1952.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072236428|gb|OEU21156.1|3.252e-1944.04hypothetical protein FRACYDRAFT_206263 [Fragilario... [more]
gi|1210519388|dbj|GAX21772.1|6.766e-1948.81hypothetical protein FisN_31Lh061 [Fistulifera sol... [more]
gi|397647573|gb|EJK77761.1|2.265e-1852.00hypothetical protein THAOC_00385 [Thalassiosira oc... [more]
gi|1210530526|dbj|GAX10853.1|2.372e-1851.32hypothetical protein FisN_31Hh061 [Fistulifera sol... [more]
gi|299117489|emb|CBN73992.1|3.178e-1350.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|397570730|gb|EJK47438.1|2.376e-1046.97hypothetical protein THAOC_33840, partial [Thalass... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9312rna9312Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications