|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100215g6.1629.mrna |
| Orig protein id | gnl|cribi|Naga_100215g6.1629 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:354568..358085 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9311 ID=rna9311|Name=rna9311|organism=Nannochloropsis gaditana|type=mRNA|length=1555bp
CAGGCTGCAACTCTCAGTCCCGAAATGCACCAGCGAAAGCCAGTCTTGGC
CTCTCTAGCGATAAAATCAACAAGACGAGGGGAGACCCCTGATCCCTGAT
GCTTTTACTTTGCTCGTGTCTCAAAAATGGCGGCATGGAGAAATGTGATG
AGATGCATTTTTTTTCTTTCTTATTTCGGGGCTCAGAGATCGTGAGATCA
GACAGTCGCTGTTTAATCTTGTGACGTGACACGGTATCGAAAATCTCACC
TGCATGCGCTCGTACATACGGACAGACATCAAACAGCAACGTCCTTCTGC
TTTCTGTTTGTCTTCCGAAATACTTCAGTCGTGGGACTCGGCCCAGTGCG
CGCCATTAACGAGAAGCATTTCGACATTCCACACGCTACGACGGGGGACA
ATAACTTTTCGTGCTCTTTTTGCCAGCGCGCCTTTACTTCCTAGCCTAGA
TGCCCCATCGAGGACCCTTCATGGCATAGCCTTAAAAAAGCAGCGGGACA
CGAGTCTTGGAAAGGCAAGAGCAGCGTGACATTAGCGTCAACGGCATATC
AACCGTCCTTCTTCCCGCATCCATTGCCTCTATATACGTCCTCCTTTCAT
GCCTGCAACCGCCACCGCCACCACCGCCCCCCCCACGTCCGGCACCTTCC
TGCCCTACGACACACCCAACGTTGACAGCAGCCCAGTTAACCAAAAAAGG
GGGGCCAGGACTCCCTCCCATGGCCATTTTCAAGGGCTTTCCTCCGACTC
AGACCGCCACTCTCCTCATTCCTCCCCCGTGTCTCCAACCCCCCGGCGCC
TGCCCGCCGGCACTGGAAGTCCCTACCGGCCTCCGTCCCACCCTCCTTCC
TCCCCTTCTACCATTGCTCCGCCTCACCATCGCCTACTGCATTCGAGCGA
CCTGGAAAGAGGGAGGGGAGGAGGAACGGGGGAAGGGAAGGAGGGAGGAA
GAGAGGGCACCGGGGGGGCTCCGCCCGACGACGAGGAGGAGGAGGAAGAT
CACGAGCAGTTCCGCTTAGGAAAGTTCGCTTATTCCTTCACCCTTTTGCT
TTTCGGGGCCTTGGCTGTGGGGTTGCTCATCACAGGGGCGCTGATGTTCG
AGACTTTTGTGGGGAAAATCCTCATGACCGGGGGCGGGGGGTTGGTGTTG
GTGATGCTGTGCATGCTCATGTGCGGAGGGGGGGAGGAAGGGAGGGAGGG
AGGGGGGAGGAAGGGGAGGAGGAAGGGAGTGGTGAATCGACACGTCTCTT
ACTGCGCAACGAGGAACGGAAGAGGAGGCTGTTGGCGGGAGGGAGGGGAG
GAGGGAGAGGGTGAGAAAACACCACGAGTTGTTGAGAGGGGGGGAAGCAA
ATAAGGCCAGGAAAGCACACGGTTGCGGTAATCTTACTTTCTATAAACAA
GCAACTCACAAGCGTCCGTCTCCGCCTGCGACACCCTCGTTGGTCTGGTG
GTGCGAGGCAGTGTAAAACCCTCTTGCCTCTCCCCTGGAATAAATCAATC
GTGCTGTCTGACACTCCTGTGGGAGCTGTCCATCCAATACTTTTTCGACA
CCTCA back to topprotein sequence of rna9311 >rna9311-protein ID=rna9311-protein|Name=rna9311|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MPIHQSIMMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLH
MALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQG
MYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPM
AQYFWYVKDD back to topmRNA from alignment at KK037252.1:354568..358085+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9311 ID=rna9311|Name=rna9311|organism=Nannochloropsis gaditana|type=mRNA|length=3518bp|location=Sequence derived from alignment at KK037252.1:354568..358085+ (Nannochloropsis gaditana)
TGGGCTTTCCTTCATGCCAATGTGCGTCTCGATctgggtgggtgggagcA
TCGGGGGTTATATTGGTGGCACGTGTTGTTTTGGGTAGGCCGCAGTATTG
TCGTGATCGGTGGGGGCAGGGCAATCCACGCGCGGGTTTGGACAAGCTca
cttttaaaaaaaatccTGAGTGCAATGAAAGTGTGTTGTTCAACATTGCT
GCACTTGTGGCTCATGTAGAATATATGTATGCCCTCAGTTGGATAGAATG
GGGCCCTTTGTTAATCTGTGGAGACGCGCCTTGTGAGTTGGTGAAGAATC
CGTCGAGTCGCCACCCCTCACGTGTTTCCTTTATTTAATCATTGACCAAC
AGCCATCAAAGCATCATGAtgtcctccaaggcctttgCCAGCAGCTTGCT
GATCTTAAGCTTCCTTTTTGCAAGCACTTGGGCATTCGTGCCTCGTCAGC
TTAGTAAGTAACTCGAGTGGGAGTTCCCCATCATCCCAGTGGATGGAGCT
GCAAGTAGATGCCATCACCAAACAAGCATGAAATATCGCACGGACCGAAT
ACATGTCCACATAATGTTCATTAAATGGAAGTGACAAGGCTGTAACGAAA
ACGACCCAAGGTCCTCAACaaatcctttttccccttctccattttctttc
ccacaGCCCGTACACCCCTGCAGCagcgtggccaaggccgcctgcATATG
GCCTTGCCCGGCAACGCTATGGGTACGTCGCGTCGAAAGTTGCAAAGAAG
Atcgtgtcttcctcctcggaccagggctgggaaagggagatgaaagaaat
accaaaggggcaggggccccGTGGAGGTTGCGTGACGTGACGAAGGACAG
AGCGGCCTTCGGTGCCTCGCTTGTCCTGTTCACAGATAACCTCACCTACT
CCACCCTGCAtatttctcgccctcctgcctccttcttgacaGCCTCCTTG
GGCCTCCTTTTGACTGCGTCCACGGGCCTCTacgcgccttcctcccctcc
cccttccttccacaacCAAGCCttcaccagcaccaccctcTCGAAGGAAG
TCGAGAGCCGCCAGGGCATGTACAAAGAGTACACGGTCGAGAAAACGGGG
CAACaggtggggcagggagggacagagggagcaaaagagggatgggcgtg
gagggagactgGCTATCAAGCGGCGTTATCCGAGTCGTGCTTATAACCAT
GCATGTGCAGTACGAAAACGCAGAGGGGACCTTCAAGACGAAAGATGAGA
CGGCAGGGAACAAGAATAAATACGTGGCTATCTTGGCGGTCCTCCTGGTG
GTAAGTGCGGAGATATCTCTCTTTGTCggatgggaagaaagaggactTCC
GGGGAGAATGTGCTCGTTTGAAAGCTTCGCCGTAACACGGAGCTCTTCGT
GCGAGGCGTGACACGACCGCGTCAAGGAATCATCTGCCCCTCCAACACTT
TTAACCGATCTCTTTCTGTAGGGAAGCTGCGTCATTCCCATGGCCCAATA
TTTCTGGTATGTCAAGGACGATTAAGTCTTCCATCCTGAGTCCTCATCCC
TGGACGGAGTGGGTCGAAATTGCATCATCGACGAGGCGATGGCGTCAGCT
TCATCCGCGGAAACAATCTCTCCCAATTTTTCCTTCGTCGCCTTTGTTGA
TGGATACACGTCCGTACTCATCAGTAGTGATCCCTTCAGTGCGATTGGGC
ATGGGGCAtgatggaaaaagaaggcttGAAGTAACGCCCTTCAGGGTGCC
GATTGGATGGGGAAAGAATTTTTCGAATAAAACACAAAAAGTTGAAAATA
GACGAGGCAAAAGATGTGCTGTACTTCCTAGAAATGATGAGAGATTGTAG
GAAGATGTTATGTTTTACTTCCTTTCTAGGATAGGAAATGCCCAATATCC
TTTCGAAGAACGTTTCTTTAAAATGAGCCATCCACAATTATCATCACAGT
ATTATTCTGAGCGTTTTATACGTTTACATACGTTTACACTCAATGCCTCA
AGCACGTGTGTCACGGTAGGGCTTCAGGTTTGAAAAAGGCTTGTTATGTT
CCCATGATTAACCTCCTACCTTCAAGTTGTAGCACAAACAAGCTTTCGAT
AGGCTGCACTCCTTGTTGCTGATGCTACCCATTATGCCCTACTATCGGTG
CTTATTCATGCCGCGTATGCGTTTGTACACGGATTTGTACGCGCCTTGGT
GGTTGATGCATGTCTCGCGGAGGTACCGTCTTTGTCGCGAGGGATTGGTC
AGGCTATGGCCGCTCCCGTGCTTTTCTGACAGCAACCGTCATTCGAGCAA
GAATTAAGAATTTGTCCGAAACAGCCTCATCCAAAGGAAATGTTCTTACA
ACTCGTCCGCGTTTTCTCAACAAGGTGTGTACATGGCCCTCATGGAAACT
CCGGATCATTCGATGAGTTCGAATGAAGCGCTTTCCTCCGTAGACAGCAC
CTTGAAGCGTCTCCAAAACCTAAAAAATGTACAACAAGTCCTTGTATTGA
CCAAGGATGGCGTCGCCCTGCACTCAAGCGTCGATCAGGTAGGTCGCTGT
TAATTTAATCCCCCTCAGATCCCTCAATGCTTTCAGCCACGCGATGCTTG
AAGCCTGTCTCGGACGTGGTGCCTCGTCTCCCCGCATGCATGTGCGCTTG
ATCTCTTCTATACCTTTCATGGTCCCTTGCGACAGGATGCTCACAAAAGT
GCTGGTTCCAGTCGTTTTCTTATTTTTTGGTGCTGGTAATCATTCTACTT
TCCAAGTTATGTTTGTCAGCTCATTTTTCACATCCTGCGTGCTCCGTTTC
CTGTACTGCACTCATGATTCACAGAAGAAAACGGCGCATCAAGCTTCATT
GATAGCATGCCTCTGCGATCAAGCAAGTGCGCTGATGAAATCCTTCGATG
ACAGCGGGAAAGGCGGTGTCGATGCGGATGAATGCCCACGGCTTCTACGC
TTCTGCAGCCAGAGGCAGGAAATTATGATCACACCGGGGAAGGACTTCTC
CTTGGTTGTGCTCCGGAAGTTGAATGGATGAACTGCAGACGTTGCATGCC
TGTCGAGGGATCGGCTTGTCCCGcccgagggggcggggggggcgatggGG
TGTGAagcagggatggagggaggaggttgtccaGTGTAGGCGGCAGGTAG
AAGTAatgaaaagaggggaaacaGCGCCCTATCATGGACTAAGAAAATGC
GCGTTGTCGACCTGGACCAGAGCCGGACAAAGAAGAATCCGaacgacggg
ggaggggggagcaggaCAAGGGCGAGTGGAATTAGAGCGTGAGACGCGAA
CGGTGACAGCCAGGCGTCCCCAGGGGAACGTTGTGTGCTGTACCTATGAT
ATTTCACGGAAACGGGTCAGCAAAATTCCACAGGCCGGAAGTCTGTCAGC
CGCGGGGGCAGGATAAATCAAGCATGTacagcattttttttttaaacaGG
GAAAGAATGACCGAAAAAGCTCGCACTGTCGCGGAAAAGAACCTCGTTCC
CACCTTTCTGGCGCCTGG back to topCoding sequence (CDS) from alignment at KK037252.1:354568..358085+ >rna9311 ID=rna9311|Name=rna9311|organism=Nannochloropsis gaditana|type=CDS|length=2898bp|location=Sequence derived from alignment at KK037252.1:354568..358085+ (Nannochloropsis gaditana)
ATGCCAATCCATCAAAGCATCATGAtgtcctccaaggcctttgCCAGCAG
CTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACTTGGGCATTCGTGCCTC
GTCAGCTTACCCGTACACCCCTGCAGCagcgtggccaaggccgcctgcAT
ATGGCCTTGCCCGGCAACGCTATGGCCTCCTTGGGCCTCCTTTTGACTGC
GTCCACGGGCCTCTacgcgccttcctcccctcccccttccttccacaacC
AAGCCttcaccagcaccaccctcTCGAAGGAAGTCGAGAGCCGCCAGGGC
ATGTACAAAGAGTACACGGTCGAGAAAACGGGGCAACagTACGAAAACGC
AGAGGGGACCTTCAAGACGAAAGATGAGACGGCAGGGAACAAGAATAAAT
ACGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAGCTGCGTCATTCCCATG
GCCCAATATTTCTGGTATGTCAAGGACGATTAAATGCCAATCCATCAAAG
CATCATGAtgtcctccaaggcctttgCCAGCAGCTTGCTGATCTTAAGCT
TCCTTTTTGCAAGCACTTGGGCATTCGTGCCTCGTCAGCTTACCCGTACA
CCCCTGCAGCagcgtggccaaggccgcctgcATATGGCCTTGCCCGGCAA
CGCTATGGCCTCCTTGGGCCTCCTTTTGACTGCGTCCACGGGCCTCTacg
cgccttcctcccctcccccttccttccacaacCAAGCCttcaccagcacc
accctcTCGAAGGAAGTCGAGAGCCGCCAGGGCATGTACAAAGAGTACAC
GGTCGAGAAAACGGGGCAACagTACGAAAACGCAGAGGGGACCTTCAAGA
CGAAAGATGAGACGGCAGGGAACAAGAATAAATACGTGGCTATCTTGGCG
GTCCTCCTGGTGGGAAGCTGCGTCATTCCCATGGCCCAATATTTCTGGTA
TGTCAAGGACGATTAAATGCCAATCCATCAAAGCATCATGAtgtcctcca
aggcctttgCCAGCAGCTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACT
TGGGCATTCGTGCCTCGTCAGCTTACCCGTACACCCCTGCAGCagcgtgg
ccaaggccgcctgcATATGGCCTTGCCCGGCAACGCTATGGCCTCCTTGG
GCCTCCTTTTGACTGCGTCCACGGGCCTCTacgcgccttcctcccctccc
ccttccttccacaacCAAGCCttcaccagcaccaccctcTCGAAGGAAGT
CGAGAGCCGCCAGGGCATGTACAAAGAGTACACGGTCGAGAAAACGGGGC
AACagTACGAAAACGCAGAGGGGACCTTCAAGACGAAAGATGAGACGGCA
GGGAACAAGAATAAATACGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAG
CTGCGTCATTCCCATGGCCCAATATTTCTGGTATGTCAAGGACGATTAAA
TGCCAATCCATCAAAGCATCATGAtgtcctccaaggcctttgCCAGCAGC
TTGCTGATCTTAAGCTTCCTTTTTGCAAGCACTTGGGCATTCGTGCCTCG
TCAGCTTACCCGTACACCCCTGCAGCagcgtggccaaggccgcctgcATA
TGGCCTTGCCCGGCAACGCTATGGCCTCCTTGGGCCTCCTTTTGACTGCG
TCCACGGGCCTCTacgcgccttcctcccctcccccttccttccacaacCA
AGCCttcaccagcaccaccctcTCGAAGGAAGTCGAGAGCCGCCAGGGCA
TGTACAAAGAGTACACGGTCGAGAAAACGGGGCAACagTACGAAAACGCA
GAGGGGACCTTCAAGACGAAAGATGAGACGGCAGGGAACAAGAATAAATA
CGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAGCTGCGTCATTCCCATGG
CCCAATATTTCTGGTATGTCAAGGACGATTAAATGCCAATCCATCAAAGC
ATCATGAtgtcctccaaggcctttgCCAGCAGCTTGCTGATCTTAAGCTT
CCTTTTTGCAAGCACTTGGGCATTCGTGCCTCGTCAGCTTACCCGTACAC
CCCTGCAGCagcgtggccaaggccgcctgcATATGGCCTTGCCCGGCAAC
GCTATGGCCTCCTTGGGCCTCCTTTTGACTGCGTCCACGGGCCTCTacgc
gccttcctcccctcccccttccttccacaacCAAGCCttcaccagcacca
ccctcTCGAAGGAAGTCGAGAGCCGCCAGGGCATGTACAAAGAGTACACG
GTCGAGAAAACGGGGCAACagTACGAAAACGCAGAGGGGACCTTCAAGAC
GAAAGATGAGACGGCAGGGAACAAGAATAAATACGTGGCTATCTTGGCGG
TCCTCCTGGTGGGAAGCTGCGTCATTCCCATGGCCCAATATTTCTGGTAT
GTCAAGGACGATTAAATGCCAATCCATCAAAGCATCATGAtgtcctccaa
ggcctttgCCAGCAGCTTGCTGATCTTAAGCTTCCTTTTTGCAAGCACTT
GGGCATTCGTGCCTCGTCAGCTTACCCGTACACCCCTGCAGCagcgtggc
caaggccgcctgcATATGGCCTTGCCCGGCAACGCTATGGCCTCCTTGGG
CCTCCTTTTGACTGCGTCCACGGGCCTCTacgcgccttcctcccctcccc
cttccttccacaacCAAGCCttcaccagcaccaccctcTCGAAGGAAGTC
GAGAGCCGCCAGGGCATGTACAAAGAGTACACGGTCGAGAAAACGGGGCA
ACagTACGAAAACGCAGAGGGGACCTTCAAGACGAAAGATGAGACGGCAG
GGAACAAGAATAAATACGTGGCTATCTTGGCGGTCCTCCTGGTGGGAAGC
TGCGTCATTCCCATGGCCCAATATTTCTGGTATGTCAAGGACGATTAA back to top
|