EWM21387.1, cds9281 (CDS) Nannochloropsis gaditana

Overview
NameEWM21387.1
Unique Namecds9281
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:354581..354588 +
Alignment locationKK037252.1:354920..355020 +
Alignment locationKK037252.1:355224..355289 +
Alignment locationKK037252.1:355510..355673 +
Alignment locationKK037252.1:355778..355867 +
Alignment locationKK037252.1:356039..356092 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21387.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100215g6.1629.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:354581..354588 +
KK037252.1supercontigKK037252.1:354920..355020 +
KK037252.1supercontigKK037252.1:355224..355289 +
KK037252.1supercontigKK037252.1:355510..355673 +
KK037252.1supercontigKK037252.1:355778..355867 +
KK037252.1supercontigKK037252.1:356039..356092 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|585101604|gb|EWM21387.1| (hypothetical protein Naga_100215g6 [Nannochloropsis gaditana])

HSP 1 Score: 333.569 bits (854), Expect = 6.395e-116
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MPIHQSIMMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            MPIHQSIMMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD
Sbjct:    1 MPIHQSIMMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|553187891|ref|XP_005854700.1| (hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526] >gi|422294356|gb|EKU21656.1| hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526] >gi|585101605|gb|EWM21388.1| hypothetical protein Naga_100215g6 [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 5.610e-110
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    8 MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD
Sbjct:    1 MMSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|219109945|ref|XP_002176725.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411260|gb|EEC51188.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.7373 bits (221), Expect = 9.849e-20
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   75 SSPPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            S+P        F+S+ +  E  +R+GMY EYT +   Q Y++A  TFK   ET   K KY A+LAVL+VGS +IPMAQYFWYV+DD
Sbjct:   53 SAPAADALTPVFSSSNVVAEKVTREGMYGEYTTDLV-QTYDDARSTFKDAKETKSKKGKYTALLAVLIVGSFIIPMAQYFWYVRDD 137          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|223999747|ref|XP_002289546.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974754|gb|EED93083.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.3521 bits (220), Expect = 1.632e-19
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query:   86 FTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            F S+ L  E  +R+G+Y+EY V+   Q +++A  T+K+  ET   K KY A++AVL+VGS +IPMAQYFWYVKDD
Sbjct:   68 FGSSNLVAERVTREGLYREYDVDVGDQVFDDARSTYKSAKETKTKKGKYTALIAVLVVGSFIIPMAQYFWYVKDD 142          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|1072236428|gb|OEU21156.1| (hypothetical protein FRACYDRAFT_206263 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 88.1965 bits (217), Expect = 4.806e-19
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   53 LPGNAMASLGLLLTASTGLYAPSSPPPSFHNQAF-TSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            L  +A+ ++  +   S+ L  P     +   QAF +STT+  E   R+G+YKEY      Q  ++A  TFK+  ET   K KY AILA+L+VGS +IPMAQYFWYV+DD
Sbjct:   36 LKKHAVNTMAAIAIGSSVLTTPM-VADALETQAFFSSTTVVAEKVVREGIYKEYEAL-IDQDVDDARSTFKSAKETKSKKGKYTAILAILVVGSFIIPMAQYFWYVRDD 142          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|1210519388|dbj|GAX21772.1| (hypothetical protein FisN_31Lh061 [Fistulifera solaris])

HSP 1 Score: 87.0409 bits (214), Expect = 8.782e-19
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 0
Query:   77 PPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            PP +    AF +  L+++V  R+G+Y EY ++   Q+Y++A  TFK+  ET   K KY A+LA+L+VGS +IPMAQY+WYVKDD
Sbjct:   55 PPAANAVPAFPTQVLAEKV-IREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDD 137          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|397647573|gb|EJK77761.1| (hypothetical protein THAOC_00385 [Thalassiosira oceanica])

HSP 1 Score: 86.2705 bits (212), Expect = 2.246e-18
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   86 FTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            F S++L  E   R+G+Y EY V+   Q Y++A   FK+  ET   K KY A++AVL+VGS +IPMAQYFWYV+DD
Sbjct:   67 FGSSSLVAERVKREGIYGEYEVDLGDQVYDDASSKFKSAKETKSKKGKYTALIAVLVVGSFIIPMAQYFWYVRDD 141          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|1210530526|dbj|GAX10853.1| (hypothetical protein FisN_31Hh061 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 2.731e-18
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 0
Query:   85 AFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            AF +  L+++V  R+G+Y EY ++   Q+Y++A  TFK+  ET   K KY A+LA+L+VGS +IPMAQY+WYVKDD
Sbjct:   62 AFPTQVLAEKV-IREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDD 136          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|299117489|emb|CBN73992.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.7886 bits (177), Expect = 3.338e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0
Query:   96 ESRQGMYKEYTVEKTGQQYENAEG--TFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160
            E+R+G+Y  Y VE   +  E   G  TFK K+ET   ++KY ++LAVLL GS VIPM QY+WY++DD
Sbjct:   88 ETREGLYGPYEVEVQERAPETDFGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDD 154          
BLAST of EWM21387.1 vs. NCBI_GenBank
Match: gi|397570730|gb|EJK47438.1| (hypothetical protein THAOC_33840, partial [Thalassiosira oceanica])

HSP 1 Score: 64.3142 bits (155), Expect = 2.704e-10
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query:   86 FTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMA 151
            F S++L  E   R+G+Y EY V+   Q Y++A   FK+  ET   K KY A++AVL+VGS +IPMA
Sbjct:   67 FGSSSLVAERVKREGIYGEYEVDLGDQVYDDASSKFKSAKETKSKKGKYTALIAVLVVGSFIIPMA 132          
The following BLAST results are available for this feature:
BLAST of EWM21387.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101604|gb|EWM21387.1|6.395e-116100.00hypothetical protein Naga_100215g6 [Nannochloropsi... [more]
gi|553187891|ref|XP_005854700.1|5.610e-110100.00hypothetical protein NGA_0347602 [Nannochloropsis ... [more]
gi|219109945|ref|XP_002176725.1|9.849e-2050.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223999747|ref|XP_002289546.1|1.632e-1952.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072236428|gb|OEU21156.1|4.806e-1944.04hypothetical protein FRACYDRAFT_206263 [Fragilario... [more]
gi|1210519388|dbj|GAX21772.1|8.782e-1948.81hypothetical protein FisN_31Lh061 [Fistulifera sol... [more]
gi|397647573|gb|EJK77761.1|2.246e-1852.00hypothetical protein THAOC_00385 [Thalassiosira oc... [more]
gi|1210530526|dbj|GAX10853.1|2.731e-1851.32hypothetical protein FisN_31Hh061 [Fistulifera sol... [more]
gi|299117489|emb|CBN73992.1|3.338e-1350.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|397570730|gb|EJK47438.1|2.704e-1046.97hypothetical protein THAOC_33840, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9311rna9311Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications