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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100479g3.6417.mrna |
| Orig protein id | gnl|cribi|Naga_100479g3.6417 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:341225..343394 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9305 ID=rna9305|Name=rna9305|organism=Nannochloropsis gaditana|type=mRNA|length=2415bp
CCTCACACCCCCTCCCTCACCGGCCACGTGACCTACAACCATACTTCTGC
CACGCCCTTCCCCTCCCTTTCCTCCTCCTCCCCCCCTTTCCACCTCCCGG
CCCTCACCTGCCTGGTGGGCGCCGAAGATGTCCTCTCTCCCTTCCTCACG
GTCGAGGAGACCCTCCTCTTCGCCGGCGCCTGCCTCCTCCCTCTCCCGAC
CTCGGCTTACCTGGCCTCCTCCGACTTTGCTGCCCTCTGCCAGGCCTCTC
CTCCCTCCCTCCCTTCCTCCCTCGCCACCAAGCTCCTTCCCCCGTCCTCC
CTGCCTTCCTCCTCCTCCCCGCCTCCTTCCCTCCCTCCTTCCCTCGGCCG
CCTCCTCCGCCGACCTTCCGCCCGCCGTGCGTTTTCCGCCCACCGCGTGG
AGATGATACTCTCCCTCCTGAACCTAACCTCCTGCCGCCACACCCGGGTC
GGGGACGCTGTCAACAGGGGGATTAGCGGCGGGGAACGCCGACGGTTGAG
CCTGGGGGAGGCCTTGATGGGCGACCACGCCGTTACTTGCTTTGATGAGA
TCTCCAACGGCTTAGACTCGGCCTCCACCCTGGACATTGTGCGGGTCCTC
CGGGCCTGGGCCAGGCACTTGCGGACCACCTCGGTCATGTCCCTCCTTCA
GCCCGCCCCCGAAGTCGTGGCCCTTTTCGACCACGTCCTGGTGCTTCGGG
AAGGGCGACTGGTCTTTCAAGGGGCCCCCTCGGCCGTTTCCGGCTATTTT
GAATTTGAGCTGGGGTTTTCCCGGCCATTGGGCATGGGCGTGGCGGATTT
TGTGCTGGCCTGCTTGACGTCACCTTCGAAGGTCAGCTTTGCCACAGGGC
AGCCCAAGGAGGGCTCAGACACCCTTCCCTCCGCCCCTTCCTCCGCCCCT
CCCTCCGCCCCTCCCTCCCTCCCCGCCTCTTTCCCGCCCACCACCACTGA
GGCCTTCGAGTCCGCCTTCCTCGCCTCGTCCCACGGCCAATCCCTGGCCT
CCTCCCTCTCCTCCCCCTCCCCCTCCCTCCCTCCCTCCTGGACTCCTCAC
GAACGACGGCCCTTCTCCGAGCAGGCCTGGCTTCCCTCTCTCCTCCTCCT
CCTCCACCGGGACTTCCTCCTCCACGCCCGCGACACCTCCCTCCTTTTCG
CCCGTTTCCTCCAATCCCTTCTTCTCGGATTCATCACTGGCTTCATCTAT
TTTCAAATCGGCGTGAAGGCCTTCCCTTCCACCGTTTTCGGGGCCCTCTA
CCAGACCATTTTAACGGTCGCCTTTCAAACGGCCGCCTCCCTCCCTTCCT
ACATCAACGCCCGGCCTCTCTTTTACAAGCAGCGGGAAGCCGGGTATTTT
GCCTGTTTTCCCGCGCTGTTGGCCTCCACCTTGATCGGCCTCCCTCTCGT
CGTGGTGGATTCCCTCCTGTTTGGGATTGTGGTGTACTTTGGCACCGGCT
TCAATGAGGGGGCAGAAGGGCGGGGAGGAGGAGGAGGGGACGGTGCGGGT
GGGGTCGGCGCGCACCTCGGCACCTTCCTCTTGAATCTGATCGCGATCGG
ATGGGCAATGATGGCCTTCTTTCGTGCCCTGACCTACCTGTGCCCCTCCC
TGACCGTCACGGCGGCCGTGGCCGGCGTCTTGACCTTCTTCTTCCTCCTC
TTCTCCGGCTTCATCCTGCCTCGGCCCTCCATGCCCGGGGCCTTTGCTTG
GATCATGTGGACCGATCCGATCTTCTACGCGTACCAAGCCCTGGCGACGA
ACGAATTCCTCTTCCGCGCCCGCTACACCCCCTCGGTGCCCGACTCCTCC
CCCCCCATCAGCGTCGGCCACGCCATCCTCAAGCAGCGTGGGCTCTTCCT
TTCCCCTGCCTGGCGCTTCAAGGGTGCCGCGATTAATCTGTTTTTATGTG
TGGTGTACGTGGGGATGACGTGGCTGGCTATGCGTAACGTGCGTTGGCGC
GAGCCGGTGAATGTGGTGATGGGGCGGGACGAGGGGGAGGGAAAGGTTGG
GTGGGAGATGGGAGAGGGGATGGAAGGGAAGGAGAGAAAGGAGGAGGCGA
GGGAGAAAAAGGCCGGGAAGGAAGAGGGTCCTCGAGGCCGCCTATCTCCT
CTTTCCTCCCCTCCTTCTCCTCCTCTTCCTCCTCCTCCTCTATCCCTCCC
TCCTCCTCCTCCTCCTCCTCCGCCTCCTCCGCCTCCTCCTCCTCCTCCGC
CGCCGCCGCCTCCTTCTTCTTCTTCCCACCTGCAAGACGTCCTCGCGGAC
ACCGGGAGGCTGGGAGGGCGGGTGGGAGGGAGGGAAGTCTTCGACCGTCT
CCCCCCTCCTCCCCCCGTGACCCTCGCCTTCGAGAACGTCTCGTACACGG
TCCCGGCACCTCGAAGCCCGTGCCTCCCTTGGAGGGCGGGAGGGAGGGCG
GGAAGGAGGGCGGAG back to topprotein sequence of rna9305 >rna9305-protein ID=rna9305-protein|Name=rna9305|organism=Nannochloropsis gaditana|type=polypeptide|length=570bp
MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSI
PRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSS
LHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATS
NSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDK
ELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEE
EVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVE
EMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEAL
VALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVI
ALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQ
LTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVT
EIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGA
LNWLVWVVCEGVGGARGGEA back to topmRNA from alignment at KK037252.1:341225..343394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9305 ID=rna9305|Name=rna9305|organism=Nannochloropsis gaditana|type=mRNA|length=2170bp|location=Sequence derived from alignment at KK037252.1:341225..343394+ (Nannochloropsis gaditana)
TCGTCTGTGATGGCCTTTGCTCAGGGCAACCTCTTGTCCCAATGTAGCAC
CAGCTTTCTCCAGCACATAGGCTTCGCTTGCGAGTGTAGACCCTTTTATT
ATTCTATGTAGCTTGACAACGCTGTGGAGCACAGAGGCGCACGTACTGAT
GTGAGTTTTACGGCACTATCTTGACAATCTTTCCATCGTGCCTacctctt
ctctcctcctgctacGGGCAGAATGCTTACTTAAAGAGGAAACTTCCCGC
TCATCCAAACGTAATTCTCTAGACATGTTGATTGTCTGATAAAACACACA
AATAGGGCCCTGGAAGACATGGAGAGCCACGAAGCTACGAGTTTGAGCAC
AACTTCCTCGACGTCGCTCTGTACCCTTTGCGACCGCCCCGTCTGGCGTC
TCCCAACTTCTACCGCACAAACCCAAACAACTGCTTCATCACATTCAGGT
GCTTGCCAGACGTCTATACCTCGACCCTCTTCAccacctgcttcctctct
tccctctccacctccatgttcttcccatcctcctccgcctttccagcggc
caccttcctcctccagtcgCGCCTCCCTTTGGACGCCGAGCGCCGCTTCT
TCGATGCCTTTATCCTCCCTtcattcttcccccccaccttccggtccccc
ctcttcccctgcttcttTCGTCATGGTGGCCCGCATGGCGGACATGAACA
TGTCTTACATCCACGTTCAAGaagcggccgccgccgccatctccccctct
tcagtcaccgccaccagcaACTCTTCACCGCGTCCTACTTCCTATACTGG
TCTTTTTGAGACCTCGCGACGGGCGGAGATGGTGCTCGAGTATGGGGCAG
GAAAAATTGACTCGGACgcgcccgcctgctcccactGCCTGAATGTGATG
CTGCAGGGCCTCGACAAGGTAggagtggggggagggggggggaacagggg
aggaagaatgaGTTCTTTCTTGGGATTCCTAGGACCCATAAAATTTTTGC
Gggatccttcttcccctcttccctccttttcgcgcctcccttcccctccc
tctctaggAACTCGCTTAcctgacagaggaggagggccgttACAACGCCG
TCATCACCCAGAAgggcgccccctccttccctccctcccttcctccctcc
cttacgtTCGCTCGAAGCGCGGCCGAGGATGCGGTGAAGGCTttacagga
ggaggaggaggtgagccggggcgaggaggagagcttgAGGGAAAAGTTAA
GGTTCCTCTCGATGCGAGAGCGGGAAGTGAGGGCtcgggaggaagaattt
tGGGACGCGCTGTGTCGGTGCGAAGAGGATAAatgggaggatgaggaagg
ggtggaggaaatgcttcgggaggtggagaggctGCATGCTCGGGCGGAAG
CACTTCAACGCCCGGGCCACGCGGTGTTGAAGATGTTGCTctttgggagg
aagggagggagggagggcgggagggagggggggaaaggtcgggaggagga
ggctttggtgGCGTTGGAGCCGGGGGGAAgcagtgggggaggggagaccg
TCTTCAGGGTCCACGGGCTTCGGGTGGCGAGGCGGGAAGACCCTCGACGG
GACCTGTGGTGGGCGGAGATCAATGCTGCATGGGGTCGGGTCGTGTTGTT
GGTGATTGCCCTCGTGCACGCGGTTGGGTttgagggcgggggggaggaaa
ggggagaggagccgggcggggggaggaagggggggaggggccgatACAGG
GCGGTGTACATGGGGGGGGCGTCCCGCATCGTCCAAGACCCGGGTAAGAA
ATCTCAGCTCACGTTTCCCCTCTTtgtggtggaaggggggagattgggtg
ggaagggagggggcggccgggcgggcggggcctcGGCAAGTGCATTAAGG
CAACAGCAGGCGACGCGGATGGACGAAGGGGTCCGACGGTTGTGCCTGTT
GGTAACGGAAATTCAAAAACACGTGCTCACGGTCGACGAAGGGGAGCGGG
CGCTGGCgttggagcaggaagagcgtCTGTTTGAGCTGGACGTGGCGAGT
TTGGggctgggcgaggagcgagggtggAACGTGGTGCTGCGCAGGCTGGC
GGGGGCGTTGAACTGGCTGGTCTGGGTCGTGTgtgagggggtgggagggg
cccgggggggggaggcgtga back to topCoding sequence (CDS) from alignment at KK037252.1:341225..343394+ >rna9305 ID=rna9305|Name=rna9305|organism=Nannochloropsis gaditana|type=CDS|length=3426bp|location=Sequence derived from alignment at KK037252.1:341225..343394+ (Nannochloropsis gaditana)
ATGGAGAGCCACGAAGCTACGAGTTTGAGCACAACTTCCTCGACGTCGCT
CTGTACCCTTTGCGACCGCCCCGTCTGGCGTCTCCCAACTTCTACCGCAC
AAACCCAAACAACTGCTTCATCACATTCAGGTGCTTGCCAGACGTCTATA
CCTCGACCCTCTTCAccacctgcttcctctcttccctctccacctccatg
ttcttcccatcctcctccgcctttccagcggccaccttcctcctccagtc
gCGCCTCCCTTTGGACGCCGAGCGCCGCTTCTTCGATGCCTTTATCCTCC
CTtcattcttcccccccaccttccggtcccccctcttcccctgcttcttT
CGTCATGGTGGCCCGCATGGCGGACATGAACATGTCTTACATCCACGTTC
AAGaagcggccgccgccgccatctccccctcttcagtcaccgccaccagc
aACTCTTCACCGCGTCCTACTTCCTATACTGGTCTTTTTGAGACCTCGCG
ACGGGCGGAGATGGTGCTCGAGTATGGGGCAGGAAAAATTGACTCGGACg
cgcccgcctgctcccactGCCTGAATGTGATGCTGCAGGGCCTCGACAAG
gAACTCGCTTAcctgacagaggaggagggccgttACAACGCCGTCATCAC
CCAGAAgggcgccccctccttccctccctcccttcctccctcccttacgt
TCGCTCGAAGCGCGGCCGAGGATGCGGTGAAGGCTttacaggaggaggag
gaggtgagccggggcgaggaggagagcttgAGGGAAAAGTTAAGGTTCCT
CTCGATGCGAGAGCGGGAAGTGAGGGCtcgggaggaagaattttGGGACG
CGCTGTGTCGGTGCGAAGAGGATAAatgggaggatgaggaaggggtggag
gaaatgcttcgggaggtggagaggctGCATGCTCGGGCGGAAGCACTTCA
ACGCCCGGGCCACGCGGTGTTGAAGATGTTGCTctttgggaggaagggag
ggagggagggcgggagggagggggggaaaggtcgggaggaggaggctttg
gtgGCGTTGGAGCCGGGGGGAAgcagtgggggaggggagaccgTCTTCAG
GGTCCACGGGCTTCGGGTGGCGAGGCGGGAAGACCCTCGACGGGACCTGT
GGTGGGCGGAGATCAATGCTGCATGGGGTCGGGTCGTGTTGTTGGTGATT
GCCCTCGTGCACGCGGTTGGGTttgagggcgggggggaggaaaggggaga
ggagccgggcggggggaggaagggggggaggggccgatACAGGGCGGTGT
ACATGGGGGGGGCGTCCCGCATCGTCCAAGACCCGGGTAAGAAATCTCAG
CTCACGTTTCCCCTCTTtgtggtggaaggggggagattgggtgggaaggg
agggggcggccgggcgggcggggcctcGGCAAGTGCATTAAGGCAACAGC
AGGCGACGCGGATGGACGAAGGGGTCCGACGGTTGTGCCTGTTGGTAACG
GAAATTCAAAAACACGTGCTCACGGTCGACGAAGGGGAGCGGGCGCTGGC
gttggagcaggaagagcgtCTGTTTGAGCTGGACGTGGCGAGTTTGGggc
tgggcgaggagcgagggtggAACGTGGTGCTGCGCAGGCTGGCGGGGGCG
TTGAACTGGCTGGTCTGGGTCGTGTgtgagggggtgggaggggcccgggg
gggggaggcgtgaATGGAGAGCCACGAAGCTACGAGTTTGAGCACAACTT
CCTCGACGTCGCTCTGTACCCTTTGCGACCGCCCCGTCTGGCGTCTCCCA
ACTTCTACCGCACAAACCCAAACAACTGCTTCATCACATTCAGGTGCTTG
CCAGACGTCTATACCTCGACCCTCTTCAccacctgcttcctctcttccct
ctccacctccatgttcttcccatcctcctccgcctttccagcggccacct
tcctcctccagtcgCGCCTCCCTTTGGACGCCGAGCGCCGCTTCTTCGAT
GCCTTTATCCTCCCTtcattcttcccccccaccttccggtcccccctctt
cccctgcttcttTCGTCATGGTGGCCCGCATGGCGGACATGAACATGTCT
TACATCCACGTTCAAGaagcggccgccgccgccatctccccctcttcagt
caccgccaccagcaACTCTTCACCGCGTCCTACTTCCTATACTGGTCTTT
TTGAGACCTCGCGACGGGCGGAGATGGTGCTCGAGTATGGGGCAGGAAAA
ATTGACTCGGACgcgcccgcctgctcccactGCCTGAATGTGATGCTGCA
GGGCCTCGACAAGgAACTCGCTTAcctgacagaggaggagggccgttACA
ACGCCGTCATCACCCAGAAgggcgccccctccttccctccctcccttcct
ccctcccttacgtTCGCTCGAAGCGCGGCCGAGGATGCGGTGAAGGCTtt
acaggaggaggaggaggtgagccggggcgaggaggagagcttgAGGGAAA
AGTTAAGGTTCCTCTCGATGCGAGAGCGGGAAGTGAGGGCtcgggaggaa
gaattttGGGACGCGCTGTGTCGGTGCGAAGAGGATAAatgggaggatga
ggaaggggtggaggaaatgcttcgggaggtggagaggctGCATGCTCGGG
CGGAAGCACTTCAACGCCCGGGCCACGCGGTGTTGAAGATGTTGCTcttt
gggaggaagggagggagggagggcgggagggagggggggaaaggtcggga
ggaggaggctttggtgGCGTTGGAGCCGGGGGGAAgcagtgggggagggg
agaccgTCTTCAGGGTCCACGGGCTTCGGGTGGCGAGGCGGGAAGACCCT
CGACGGGACCTGTGGTGGGCGGAGATCAATGCTGCATGGGGTCGGGTCGT
GTTGTTGGTGATTGCCCTCGTGCACGCGGTTGGGTttgagggcggggggg
aggaaaggggagaggagccgggcggggggaggaagggggggaggggccga
tACAGGGCGGTGTACATGGGGGGGGCGTCCCGCATCGTCCAAGACCCGGG
TAAGAAATCTCAGCTCACGTTTCCCCTCTTtgtggtggaaggggggagat
tgggtgggaagggagggggcggccgggcgggcggggcctcGGCAAGTGCA
TTAAGGCAACAGCAGGCGACGCGGATGGACGAAGGGGTCCGACGGTTGTG
CCTGTTGGTAACGGAAATTCAAAAACACGTGCTCACGGTCGACGAAGGGG
AGCGGGCGCTGGCgttggagcaggaagagcgtCTGTTTGAGCTGGACGTG
GCGAGTTTGGggctgggcgaggagcgagggtggAACGTGGTGCTGCGCAG
GCTGGCGGGGGCGTTGAACTGGCTGGTCTGGGTCGTGTgtgagggggtgg
gaggggcccgggggggggaggcgtga back to top
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