EWM21397.1, cds9275 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|585101616|gb|EWM21398.1| (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana]) HSP 1 Score: 1139.79 bits (2947), Expect = 0.000e+0 Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0
Query: 1 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 570
MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA
Sbjct: 6 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 575
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|585101615|gb|EWM21397.1| (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana]) HSP 1 Score: 1139.02 bits (2945), Expect = 0.000e+0 Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0
Query: 1 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 570
MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA
Sbjct: 1 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 570
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|915164144|ref|XP_013330370.1| (Autophagy protein Apg6 [Rasamsonia emersonii CBS 393.64] >gi|802094133|gb|KKA23758.1| Autophagy protein Apg6 [Rasamsonia emersonii CBS 393.64]) HSP 1 Score: 64.6994 bits (156), Expect = 2.569e-7 Identity = 100/395 (25.32%), Postives = 150/395 (37.97%), Query Frame = 0
Query: 60 SLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPP----SGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNS-----SPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAV-LKMLLFGRKGGREGGREGGKGREEEAL--VALEPGGSSGGGETVF-RVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRI 441
SLP P S P RPP R L+ ++ + S PPP +G P+ P + R MS++ + E+ A +N S + RA + E + + D D P C C +++ GL K+LA T+E Y ++F +S +A QEE E + E+SL+E L + E+ A E+E K ++ + E+ E RL E R +A L + F + R R+ E L + G + F ++GLR+ R +P D WAEINAAWG+ LL+ + +GF+ G YR MG SRI
Sbjct: 34 SLPEHPNNS-----PSHRPPYPPERRELYDRASRHASTPVYRRSIPPPRHASTGSPTHP----RLGRGDSGGMSFVMLTESQVAPPQTPGANGDTNGQGVDGSSQDGEDKSFSSQVERATRLFEILSARSDIDHPICVECTEMLVDGLQKKLAAATKERDAY-------------------ISFLKSL--NATVPSQEEVEAA---EKSLKETLEAEAAAYEELLALEKE-----------KAAVDQEIAELEEEARRLDLEEEKFWRDRNAFALTLSEFQNERDALNMRYDHDSRQLERLQRTNVYNDAFCIGHDGYFGTINGLRLGRLANPSVD--WAEINAAWGQTALLLATIAERLGFQFKG-----------------YRLKPMGSTSRI 365
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|242799690|ref|XP_002483432.1| (autophagy protein Apg6, putative [Talaromyces stipitatus ATCC 10500] >gi|218716777|gb|EED16198.1| autophagy protein Apg6, putative [Talaromyces stipitatus ATCC 10500]) HSP 1 Score: 64.3142 bits (155), Expect = 3.351e-7 Identity = 73/305 (23.93%), Postives = 118/305 (38.69%), Query Frame = 0
Query: 148 ATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSR------GEEESLREKLRFLSMREREVRAREEEFWD-----ALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRI 441
AT ++ + T L + + + + + + D D P C+ C ++++GL K LA T+E Y + + A P+ + ++A ++ LQEEE + E+ L ++ L R++ EE+FW AL E ++DE M + + E LQR + G +G G ++GLR+ R +P D WAEINAAWG+ LL+ + +GF+ G YR MG SRI
Sbjct: 128 ATKTNAGQETKNQSLSDEVEKTARLFDIISARSDIDHPICTECTELLVEGLHKRLAGATKERDAYISFLKTINASI------PTESEVKAAEKNLKSTLQEEEAAYQELLALEKEKADLDREIADLEEESRQLDLDEEKFWRERNAFALSLAE---FQDERDALNM--RYDHDSRQLERLQRTNVYNDAFCI---------GHDGYFGT----------------------INGLRLGRLANPSVD--WAEINAAWGQTCLLLATIAEKLGFQFRG-----------------YRLKPMGSTSRI 371 The following BLAST results are available for this feature:
BLAST of EWM21397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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