EWM21397.1, cds9275 (CDS) Nannochloropsis gaditana

Overview
NameEWM21397.1
Unique Namecds9275
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:341543..342142 +
Alignment locationKK037252.1:342282..343394 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21397.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100479g3.6417.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:341543..342142 +
KK037252.1supercontigKK037252.1:342282..343394 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
Homology
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|585101616|gb|EWM21398.1| (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana])

HSP 1 Score: 1139.79 bits (2947), Expect = 0.000e+0
Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0
Query:    1 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 570
            MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA
Sbjct:    6 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 575          
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|585101615|gb|EWM21397.1| (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana])

HSP 1 Score: 1139.02 bits (2945), Expect = 0.000e+0
Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 0
Query:    1 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 570
            MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA
Sbjct:    1 MESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGACQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGGARGGEA 570          
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|915164144|ref|XP_013330370.1| (Autophagy protein Apg6 [Rasamsonia emersonii CBS 393.64] >gi|802094133|gb|KKA23758.1| Autophagy protein Apg6 [Rasamsonia emersonii CBS 393.64])

HSP 1 Score: 64.6994 bits (156), Expect = 2.569e-7
Identity = 100/395 (25.32%), Postives = 150/395 (37.97%), Query Frame = 0
Query:   60 SLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASSMPLSSLHSSPPP----SGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSSVTATSNS-----SPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAV-LKMLLFGRKGGREGGREGGKGREEEAL--VALEPGGSSGGGETVF-RVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRI 441
            SLP  P  S     P  RPP    R  L+  ++  +       S PPP    +G P+ P     + R     MS++ + E+  A          +N      S +            RA  + E  + + D D P C  C  +++ GL K+LA  T+E   Y                   ++F +S   +A    QEE E +   E+SL+E L   +    E+ A E+E           K   ++ + E+  E  RL    E   R  +A  L +  F  +      R     R+ E L    +       G +  F  ++GLR+ R  +P  D  WAEINAAWG+  LL+  +   +GF+  G                 YR   MG  SRI
Sbjct:   34 SLPEHPNNS-----PSHRPPYPPERRELYDRASRHASTPVYRRSIPPPRHASTGSPTHP----RLGRGDSGGMSFVMLTESQVAPPQTPGANGDTNGQGVDGSSQDGEDKSFSSQVERATRLFEILSARSDIDHPICVECTEMLVDGLQKKLAAATKERDAY-------------------ISFLKSL--NATVPSQEEVEAA---EKSLKETLEAEAAAYEELLALEKE-----------KAAVDQEIAELEEEARRLDLEEEKFWRDRNAFALTLSEFQNERDALNMRYDHDSRQLERLQRTNVYNDAFCIGHDGYFGTINGLRLGRLANPSVD--WAEINAAWGQTALLLATIAERLGFQFKG-----------------YRLKPMGSTSRI 365          
BLAST of EWM21397.1 vs. NCBI_GenBank
Match: gi|242799690|ref|XP_002483432.1| (autophagy protein Apg6, putative [Talaromyces stipitatus ATCC 10500] >gi|218716777|gb|EED16198.1| autophagy protein Apg6, putative [Talaromyces stipitatus ATCC 10500])

HSP 1 Score: 64.3142 bits (155), Expect = 3.351e-7
Identity = 73/305 (23.93%), Postives = 118/305 (38.69%), Query Frame = 0
Query:  148 ATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKALQEEEEVSR------GEEESLREKLRFLSMREREVRAREEEFWD-----ALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGREEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRI 441
            AT  ++ + T    L +   +   + +  + + D D P C+ C  ++++GL K LA  T+E   Y + +    A        P+ +  ++A ++    LQEEE   +       E+  L  ++  L    R++   EE+FW      AL   E   ++DE     M    +    + E LQR         +         G +G  G                       ++GLR+ R  +P  D  WAEINAAWG+  LL+  +   +GF+  G                 YR   MG  SRI
Sbjct:  128 ATKTNAGQETKNQSLSDEVEKTARLFDIISARSDIDHPICTECTELLVEGLHKRLAGATKERDAYISFLKTINASI------PTESEVKAAEKNLKSTLQEEEAAYQELLALEKEKADLDREIADLEEESRQLDLDEEKFWRERNAFALSLAE---FQDERDALNM--RYDHDSRQLERLQRTNVYNDAFCI---------GHDGYFGT----------------------INGLRLGRLANPSVD--WAEINAAWGQTCLLLATIAEKLGFQFRG-----------------YRLKPMGSTSRI 371          
The following BLAST results are available for this feature:
BLAST of EWM21397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585101616|gb|EWM21398.1|0.000e+0100.00hypothetical protein Naga_100479g3 [Nannochloropsi... [more]
gi|585101615|gb|EWM21397.1|0.000e+0100.00hypothetical protein Naga_100479g3 [Nannochloropsi... [more]
gi|915164144|ref|XP_013330370.1|2.569e-725.32Autophagy protein Apg6 [Rasamsonia emersonii CBS 3... [more]
gi|242799690|ref|XP_002483432.1|3.351e-723.93autophagy protein Apg6, putative [Talaromyces stip... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9305rna9305Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications