rna9300, rna9300 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9300
Unique Name	rna9300
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2541
Alignment location	KK037252.1:321953..324474 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100300g5.3768.mrna
Orig protein id	gnl\|cribi\|Naga_100300g5.3768
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:321953..324474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100300g5	gene9018	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9300	rna9300-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21401.1	cds9270	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:321953..324474+
coding sequence from alignment at KK037252.1:321953..324474+

mRNA sequence

>rna9300 ID=rna9300|Name=rna9300|organism=Nannochloropsis gaditana|type=mRNA|length=2541bp
ATGAAGCGGCGGCGCAGATCAGAGAGCGGTACCAAAGGAGATGCATTGAA
TAATGGAACACACATGGACATCTCTGCCATCCCCATCCAGCCTTCTACCA
TGTCAGAATTCAAAACGATTCCATCCCCTTTTTCGTTACGCGGCAAAGAG
GGCGGCTTCCTTCAACGACATTGGAGGAAATTCAAGCACAAGCGGGCGAA
AAAAAAGGTCGAGGAGACGATGATTTCAACTCCTAACGAAGATGATGGAG
AGGATGCGGAGGAGGAAGAAGGTGACTTCGATGTGGCATTTTCCCGTTCT
CCGGTGCAGGACCCACCCCAGTTGGCCCCGGTCTCGCCTGGGAACAAGCA
CTGCTTGAGCGCTGCAGACGCCCACGCTGCAGTGGTTGCTGCGGAAGCGG
CTGTGTTGGCACGTAAAGCCCTCCAGGAAGAGGAAGAGGCCGCCCGGCGG
CAGCAGTTATGGAAATTGAAAAGCTTCTTGGCCGTGTACCTGACGCTGCT
GGTGATGAGCTTTGCCTTGTCCGTGTGGTCGGACCTGACTCTCCTGGTGC
CCCGGCTTTTGAAAGTGTCCTTGGTCCTACAAGTGACCTCCGCCGCCTTT
TTCTGTCTGGCGGTGCCCATCACGCATTGCAGCGGCGCCTTCTTCTTCCC
CCAGTGGCGGTTCTACCAGCCTTTCCAAGGCGGCACCCGGTTCGTCGTCT
TTCAGGCCATCAGCTGGACATTCTACGCTCTCTGCTTGCTCCTCGCCGTG
AGCTGCCTGCTGGTTTGGTCCTCGGTCCTGCAATATACTCTCGGGTTGAT
GACTTCCTTCGGCGTCTTCGGGGTCCTGTCTCAGTGGCGGTTCTGGCAGC
CCTTTCTGGGTGGGGCGAAATTCATGTTGCTTCAGGCCTTGAGCTGGTCT
CTGTTCGCCGTCTCTATAATCATGGAGGTCCTCTTCGTCATCTCAACCTT
CGCCATGGGCTTCGAGCTCTTTGTCGGGGCGGCGGTGGTGGCCGGCGCTT
TCTTCCTGGCCTCCGAGGTGCTGATGATCGTCTCCTTGCATTTCTACCTG
CCCATGACCAGGACGAGCCCGGAGGCGGGAAAGACTTGGGTGGGCGGTCC
GAGGGGGAAGGCGAAGAGCGGGAGGGAGGACGAGGTAAAGCGCGAGGGAG
GGGCGGACGCAGCGGTGGCGCCCACGGCGAGGGAGGTGGAGGTTTTCCCA
GTGGAGACAGGCGCAAAGGCCAGGGGCATCATGGGCGCCGTGTTCGGCCT
CTGTGGTGGGAAGAGAGGAGAGGGTCGGACCGGCTTGTCGTGGGAAAGTC
TCCCAGTGAACGAGGAGTCGATCGAGCAATTCCGTCGGCTCACCGTCATC
ACCGTCCTCTCCAACATGCAATACTTGCCCTTTCTCCTCCCCATCCTCCC
TTTCCTCCTCTCGGGCCTTCCCCTCCCCCGGGCGGCTTTCCATTGGCTGG
GGGTCTTCTGTTGTCTCACGGCGGCAGTTGTGATCAACGCGTACGTGAAA
ACCACGCTTGCCAAGCCCCCCCCCCGCCTTTCCTCCTTCCACCACACCCT
CCTTCGCGCCCTCCCCTCCCTCGTTCACGCTCTCCCCGGGCTCTGCACCG
TACTGGCCTGGAGGGAGGGTCAAGGCCCTTCTGTGGTCGGGGACCGGCGG
GGGCTCCCGTCGGCTTTCCCCGCCTGGTTCTGTCTCACGGCAATCTACTA
CGTCTACCTAGGTCTCACTTTCCGGGGGAGGCCGGAGGTGACGGGTGGGA
GGTACTTGGGTGAGGGGCTGGAACTGTGGAAGGGGGGCTGGTCCCTCTTC
ACTTTTCTGGACGGGATCGATCAATATTTCCAAGCCAAGCTCGTCTTCAT
GGACGCAGCCTTGGATCTGAAGGGGAAACCGCACGTGTTCGCCTTTCACC
CCCACGGAGTACAACCTTTCACGGTCTTCTGGATCCAGCTCTCCCGGGCC
TGGCGGGAGGGCGTGGGACGAGGGCAGCGCTTCTGTGTGATGACGGCGAG
TGTGATGCATTACGTACCCCTGATGCGAGACATCCTGCAATGGTTGGGGG
GCCGCGAGGTGTCCAAGGAGAGTATCTGCCACGCCCTCCATCGACAGGAG
TCGGTGTTGCTGGTCCCGGGGGGGCAGCAAGAGATGATGGAGTCCCAGTC
TCAGATGGGGGAGATCCGGCTCGTGACCCGCCACGTGGGATTCATTCGCC
TCGCCCTACAGACCGGGACGCCCTTGGTCCCTGTCCTCTCTTTTGGAGAG
GTGGAAGTGATGGATTTTGTCCGTTACCCCCGCTTGCAACGCTTTTTCAT
CCAACGGCTCGGCATTCCGGTTCCTTTTTTTCCGTACGGCTTGTTCGGAT
TCCCCATCCCGAGGCCCGTGCCTGTCACGGTGGTGTTTGGGCGGGCGTTT
GAGGTGGAGAAAATCGCCGAGCCCACGCAGGAGGACGTGAGTCGGTTGGC
GAAACGTTATTTTGAGCGCATCGAAGAGATGTTCGAGAAGAATAAAGCGG
GAGCAGAGGGGCATGCAGCGTCGCGACTGGTCTTGCTCTGA

protein sequence of rna9300

>rna9300-protein ID=rna9300-protein|Name=rna9300|organism=Nannochloropsis gaditana|type=polypeptide|length=403bp
MRNGKSSVGGGNTTINYADVAHTTVTTPVASKSVGGAKRKQAAITKNERR
HPEAGARTGGDRAGGPTVRDVAVDKENRRRQGATGGNGRDKEEMGRERAG
GDLSKAAKRAKPSGPITSVPPPPSHPQSSPSAPSSSSSSASGAQPASVRY
PRLNYAEAVPPTERTFISPDVPDTDKLLYLASRVMEADTLQVERMLMSTK
YQHLSHEMEKYAGMVGKRLRRVLEEDARAEVAELGELERLRRERREAVAA
CDALDEEAGKLRKVLRIWEEMDREMEVEGGRFTDQVGAARAAEMERAEGA
LASQERSRTGGTETAAGYTSPVTEETLTLLAQGPGIRAHILESAGQLVDA
LEGKVAEVRQVEEAAKGQQKALAAAFRAVSFAGIPAMGEPAVALKRAGGG
KIK

mRNA from alignment at KK037252.1:321953..324474+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9300 ID=rna9300|Name=rna9300|organism=Nannochloropsis gaditana|type=mRNA|length=2522bp|location=Sequence derived from alignment at KK037252.1:321953..324474+ (Nannochloropsis gaditana)
AGACAGAAGACGCGCAGAAAGCAAGCCTGCGGTCCTGCGCCATGGCTGGG
CGGTGGGATGAATCTGGAGGCATTTAGCAGGTTGAAATATGTTTTTGTTC
CTGGTTGACCTTTTTTTATGACTTTTCAGGAAATTTTGACGTTTCGCCCG
TAATctcagggagggggagacctCAAGGCCGGCCCAGACCCAAGTGCTAA
GGAGACAGAGGTACTGCCCAACCTGCATTGCTCCTCAACTCTTCGTTATT
AACGCTGTACGTATATAAAGTCATAAAAATTTCGGCGTGATAGGCCATTC
TATCCATGCGGAACGGGAAAAGCAGCGTTGGCGGGGGCAACACTACCATA
AACTACGCGGTGAGATGATGTTCCAGTTCCTCTGTGACCAGGTCTCTTCA
ATACGCCATTATTGAGCTTTTAAGAAAGCCTTTGTTTTTTCAAAGAACGA
TTTCCTTTCATTTCCGTGCATACTTGGTCGGTGGCGGTGGTATAATGTGT
CCAGACTTTTGCTGTGTGAAGAGATCGTATGCACTTCCCGGGTTCCCCGA
AGTGCTTCTTAAAAAGCAACCGCTCTCTTTTGTCTCATTTCACCACCACA
TCAGACGCTATTCAAGTATGATACACATATATACAGAAGCAAGTTTTTTG
GCCCACTAACATTATTGAAAATCCATGTTGACCGCGCCCTAACACCCTGT
TTCCATCtctgcttcccttcctcctttcctctttcctttctccccccgAC
GTGCAGGATGTAGCCCATACCACGGTAACCACGCCGGTTGCGTCCAAATC
TGTTGGAGGGGCGAAGCGGAAACAAGCCGCCATCACCAAAAATGAACGGC
GGCACccggaggccggggcccgCACGGGGGGAGACAGGGCCGGAGGGCCC
ACAGTGAGGGATGTGGCGGTAGACAAGGAGAATCGTCGGCGGCAGGGGGC
aacgggagggaacgggcgggacaaagaggagatgggaagggagagggcgg
gaggcgacCTGTCCAAGGCCGCGAAACGGGCCAAGCCTTCCGGCCCCATC
ActtccgtccctccgcccccatcaCATCCTCAATCTTCGCCTtcggctcc
ctcctcctcctcctcctccgcctcgggggCCCAGCCGGCCAGTGTGCGCT
ACCCTCGTCTGAACTACGCCGAAGCCGTGCCGCCCACCGAACGGACTTTC
ATCTCCCCTGACGTACCGGACACGGACAAGCTCCTGTATTTGGCGTCGCG
CGTGATGGAAGCCGATACCTTGCAGGTGGAACGGATGCTGATGTCGACCA
AGTACCAGCATTTGTCGCACGAGATGGAGAAGTACGCGGGCATGGTGGGG
AAACGCCTGCGTCgggtcttggaggaggacgcgagggcCGAGGTCGCCGA
GTTGGGGGAACTGGAGCGCCTCcgtcgggaaaggagggaggctgttGCGG
CCTGCGAcgccctggacgaggaggccgggAAACTCCGCAAAGTTTTGAGG
ATATGGGAAGAAATGgacagggagatggaggtggagggcggtcGGTTTAC
GGACCAGGTgggggcggcgcgggcggcggaAATGGAGCGGGCAGAGGGGG
CCCTCGCGTCTCAAGAAAGGTCTCGAACCGGTGGGACGGAGACGGCAGCC
GGCTACACCTCCCCTGTGACGGAAGAAACCTTGACGTTGCTGGCCCAGGG
CCCCGGCATCCGCGCCCACATCCTGGAAAGCGCCGGCCAACTGGTGGACG
CcctggaggggaaagtggcGGAGGTgcggcaggtggaggaagcggcgaag
GGGCAGCAAAAAGCTTTGGCCGCCGCGTTTCGAGCCGTATCTTTTGCAGG
AATCCCCGCCATGGGGGAGCCGGCGGTGGCGCTGaagcgggcggggggag
ggaaaataaAGTGAGGGGCCGCAGAGGGGTGGGACAGGGGGCAACGTGGG
GTGTGAAAAAGTACGAAGGAGGTAGAGACAGTGGCGATGgcgggaggcga
aggggggagacgggccaagaagggaggaaggcggggtccATGGGGGAACC
TGAGGCATATTCGGAGCGAGCATGGATATCAGGCGGTGGGCGTGCAAGGA
GGCTGCTGGCTCGCGGAAAGCCAGCTCCcctggtagggagggagggaaaa
gccagTGCGATTCGAGCAGGGGGGATTGCGGCCTTTGTTTGCATCGGAAG
CACAATAGGAAGGAGACGCGCCTGGAAGGAAGTGTTGCTTgccgatgggg
agggagacaatgGGCCGAAACGCCGGAAGCGGGTCCGAGAGGCCGAGGGC
ATCTCCAAAAGGAATATGTCGGGGATGAGAGTGAGGGAATGTGACGGCGA
TGGCATCcgaaggggtgggaaagaatgCTTCGTCcctccaggaaggggag
tggacggggaaagggggggggagcaaaTACGGGGGGACTCGAGCGACAGG
GAAAAAGCAATGACAGACATGTGCCGGACAGTGATCtatgaaaagaaaaa
tccAATCAACGCATCAGGTGCC

Coding sequence (CDS) from alignment at KK037252.1:321953..324474+

>rna9300 ID=rna9300|Name=rna9300|organism=Nannochloropsis gaditana|type=CDS|length=2424bp|location=Sequence derived from alignment at KK037252.1:321953..324474+ (Nannochloropsis gaditana)
ATGCGGAACGGGAAAAGCAGCGTTGGCGGGGGCAACACTACCATAAACTA
CGCGGATGTAGCCCATACCACGGTAACCACGCCGGTTGCGTCCAAATCTG
TTGGAGGGGCGAAGCGGAAACAAGCCGCCATCACCAAAAATGAACGGCGG
CACccggaggccggggcccgCACGGGGGGAGACAGGGCCGGAGGGCCCAC
AGTGAGGGATGTGGCGGTAGACAAGGAGAATCGTCGGCGGCAGGGGGCaa
cgggagggaacgggcgggacaaagaggagatgggaagggagagggcggga
ggcgacCTGTCCAAGGCCGCGAAACGGGCCAAGCCTTCCGGCCCCATCAc
ttccgtccctccgcccccatcaCATCCTCAATCTTCGCCTtcggctccct
cctcctcctcctcctccgcctcgggggCCCAGCCGGCCAGTGTGCGCTAC
CCTCGTCTGAACTACGCCGAAGCCGTGCCGCCCACCGAACGGACTTTCAT
CTCCCCTGACGTACCGGACACGGACAAGCTCCTGTATTTGGCGTCGCGCG
TGATGGAAGCCGATACCTTGCAGGTGGAACGGATGCTGATGTCGACCAAG
TACCAGCATTTGTCGCACGAGATGGAGAAGTACGCGGGCATGGTGGGGAA
ACGCCTGCGTCgggtcttggaggaggacgcgagggcCGAGGTCGCCGAGT
TGGGGGAACTGGAGCGCCTCcgtcgggaaaggagggaggctgttGCGGCC
TGCGAcgccctggacgaggaggccgggAAACTCCGCAAAGTTTTGAGGAT
ATGGGAAGAAATGgacagggagatggaggtggagggcggtcGGTTTACGG
ACCAGGTgggggcggcgcgggcggcggaAATGGAGCGGGCAGAGGGGGCC
CTCGCGTCTCAAGAAAGGTCTCGAACCGGTGGGACGGAGACGGCAGCCGG
CTACACCTCCCCTGTGACGGAAGAAACCTTGACGTTGCTGGCCCAGGGCC
CCGGCATCCGCGCCCACATCCTGGAAAGCGCCGGCCAACTGGTGGACGCc
ctggaggggaaagtggcGGAGGTgcggcaggtggaggaagcggcgaagGG
GCAGCAAAAAGCTTTGGCCGCCGCGTTTCGAGCCGTATCTTTTGCAGGAA
TCCCCGCCATGGGGGAGCCGGCGGTGGCGCTGaagcgggcggggggaggg
aaaataaAGTGAATGCGGAACGGGAAAAGCAGCGTTGGCGGGGGCAACAC
TACCATAAACTACGCGGATGTAGCCCATACCACGGTAACCACGCCGGTTG
CGTCCAAATCTGTTGGAGGGGCGAAGCGGAAACAAGCCGCCATCACCAAA
AATGAACGGCGGCACccggaggccggggcccgCACGGGGGGAGACAGGGC
CGGAGGGCCCACAGTGAGGGATGTGGCGGTAGACAAGGAGAATCGTCGGC
GGCAGGGGGCaacgggagggaacgggcgggacaaagaggagatgggaagg
gagagggcgggaggcgacCTGTCCAAGGCCGCGAAACGGGCCAAGCCTTC
CGGCCCCATCActtccgtccctccgcccccatcaCATCCTCAATCTTCGC
CTtcggctccctcctcctcctcctcctccgcctcgggggCCCAGCCGGCC
AGTGTGCGCTACCCTCGTCTGAACTACGCCGAAGCCGTGCCGCCCACCGA
ACGGACTTTCATCTCCCCTGACGTACCGGACACGGACAAGCTCCTGTATT
TGGCGTCGCGCGTGATGGAAGCCGATACCTTGCAGGTGGAACGGATGCTG
ATGTCGACCAAGTACCAGCATTTGTCGCACGAGATGGAGAAGTACGCGGG
CATGGTGGGGAAACGCCTGCGTCgggtcttggaggaggacgcgagggcCG
AGGTCGCCGAGTTGGGGGAACTGGAGCGCCTCcgtcgggaaaggagggag
gctgttGCGGCCTGCGAcgccctggacgaggaggccgggAAACTCCGCAA
AGTTTTGAGGATATGGGAAGAAATGgacagggagatggaggtggagggcg
gtcGGTTTACGGACCAGGTgggggcggcgcgggcggcggaAATGGAGCGG
GCAGAGGGGGCCCTCGCGTCTCAAGAAAGGTCTCGAACCGGTGGGACGGA
GACGGCAGCCGGCTACACCTCCCCTGTGACGGAAGAAACCTTGACGTTGC
TGGCCCAGGGCCCCGGCATCCGCGCCCACATCCTGGAAAGCGCCGGCCAA
CTGGTGGACGCcctggaggggaaagtggcGGAGGTgcggcaggtggagga
agcggcgaagGGGCAGCAAAAAGCTTTGGCCGCCGCGTTTCGAGCCGTAT
CTTTTGCAGGAATCCCCGCCATGGGGGAGCCGGCGGTGGCGCTGaagcgg
gcggggggagggaaaataaAGTGA

Synonyms

Publications