rna9280, rna9280 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9280
Unique Name	rna9280
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1953
Alignment location	KK037252.1:272086..274522 +

Link to JBrowse

Properties


Property Name	Value
Product	ras-related gtp binding c
Orig transcript id	gnl\|cribi\|Naga_100147g9.4595.mrna
Orig protein id	gnl\|cribi\|Naga_100147g9.4595
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:272086..274522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100147g9	gene9000	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9280	rna9280-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21414.1	cds9250	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:272086..274522+
coding sequence from alignment at KK037252.1:272086..274522+

mRNA sequence

>rna9280 ID=rna9280|Name=rna9280|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp
TCTCTCAATACACAGATTGGGCCTCGTTTCCTAAGATAGCTCGCGGCCAG
TGTAAGGCGTAAGGCACACTGCCTCATTGGAGGGAGCTGCGATGGCTCTC
GAGTACACTGACGAGCAGCAAATGCTCACCGACTTGACCAAGCCCCGTAT
CCTTCTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCG
TTTTCCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCAC
GCCGTCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAAT
CTGGGATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGTAACGGAG
GGGAGGGAGGGGGAGGGGGAAGGGAATTGGGCGGGAGCATGACCCAGGAG
GGAGAAGGGGAGGGTCCGAAAGAGGGAGAGCTTCTGGACGAAGTCGGCGT
CTTCGGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGC
CCTACCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAG
AGCGTGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGG
AGACCTCTTCCTTTCGGACGAGCACAAGGTCGACTGCCAGCGTGACGTCC
AACACCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAG
GTTTCATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTT
TTCCAAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATC
TGCTCAACTACCTAATCAGCGCCTGCAAGATGGAGAAATCTTTCCTCTTC
GACGTGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACAT
GCAGACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCT
CCTGTATCTATGGGTATGTCGTGGGGGAAGAGAGGCAGGCTGGGGGGCCA
CTGGGCCGAAACATGATTTTCGGGTGACTCCATGGGAAGTGTAGCATGCT
TTGTTCTTTGAGCGACTCGGTAGCGCATATGCACGGCTACAATATTTTAA
TTCCGAAATGCTGCTGTGAGGGATGCTGTGATGGGCGACATCATTTTCTC
CCCTTCTCACTTCTTTGAAAATACATTGCTCTCACTTTCTGATGCTATAG
TGTCAAATACGACGCGGAGGGGGAGGCGCAGGGCCCAGTCTACGACTCAG
ACTCCTCCTCGACGATCCACCTTAGCAATGGCATGGTCCTCTACCTCCGA
GAAGTGGACGACTATCTCGCCTTTGTCGGACTGATGCGGGCGGAAAATTT
TCAAAAGAAAGGCCTGATTGATTTTAACATTGACTGCCTGAAACGTTCGT
TAGGGCGTCTCTCAAGCGAGGGTGGAAGTGGGGGAGGTGGGAAAGGACAT
GTTCACGAAGAAAAGAGAAACATCATGAGCGGCGCGTCTCGCAAAGGTAC
TCCCGATCCCTACCAGAGAATAAGGAATGGGCCAGCGTCGATGAGCGACT
TATTAGAAATAAAGTAAAAACATATCTTCGACACCGCAAATTACTCTGCA
ACTCATGAAATATCGAGTCGGAAGGCTTATGATACAATAATGTTGATTCA
GACAGCTTATTATAACGATGCTATGTATCTTAAGGTTGACGCGGCAACAG
TTTGCCCACCGGATGCGTGACCTGGTTTGCTCGATGTTCTATGACTGTAT
TGTTGTAGTACAGCGTCTCACTTCCTGACACTCTCTGCGACATGGACACA
GTCACTGTACATACAACTTATGTATCTGCGACTGACACTGCTACGACACA
CGTTGTCAAGAATGCAAGGATACGTTTCCATGTCGTCGAACGTACGACAA
CAGACATGAAGAAAAGCATTTTCCGCAAAGAAAAGAAATGAAAAAATGTT
TGA

protein sequence of rna9280

>rna9280-protein ID=rna9280-protein|Name=rna9280|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MALEYTDEQQMLTDLTKPRILLMGPRRSGKTSILRVVFQKMPPHETLFLE
STHAVDIRLANNNPFLQFQIWDFPGDFFFYRVSRNGGEGGGGGRELGGSM
TQEGEGEGPKEGELLDEVGVFGVPAALVFVLDAQDEPYHEALTRLVDLVA
RGQSVNPSLHVVVFIHKVDGDLFLSDEHKVDCQRDVQHRIAQELRDASLE
HVEVSCFLTSIYDHSIFEAFSKIVQRLTHQLPVMENLLNYLISACKMEKS
FLFDVVSRLYLATDSNPVDMQTYEMCVDMIDVVVDVSCIYGVKYDAEGEA
QGPVYDSDSSSTIHLSNGMVLYLREVDDYLAFVGLMRAENFQKKGLIDFN
IDCLKRSLGRLSSEGGSGGGGKGHVHEEKRNIMSGASRKGTPDPYQRIRN
GPASMSDLLEIK

mRNA from alignment at KK037252.1:272086..274522+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9280 ID=rna9280|Name=rna9280|organism=Nannochloropsis gaditana|type=mRNA|length=2437bp|location=Sequence derived from alignment at KK037252.1:272086..274522+ (Nannochloropsis gaditana)
TCTCTCAATACACAGATTGGGCCTCGTTTCCTAAGATAGCTCGCGGCCAG
TGTAAGGCGTAAGGCACACTGCCTCATTGGAGGGAGCTGCGATGGCTCTC
GAGTACACTGACGAGCAGCAAATGGTAATTTGTGAGCCGCAATATTTCCT
GCCATCCTTCCATTGTAATTTGCTCTGTTTTTCCATATAATTGTCATCGT
GAAGCAACAGTTCACTCGTAAACGTCACTCCTTTACCCCCGCCCTACTCC
TTCGGTGTGCATTTGCCACGAATTGTACATGGACGAGTTTCGGCTTATTT
CAGTGTCAAAGCTGGCAATTTGTCTTTAATCCCATTGTCATTACGTGCCC
TTATGCCTGGTTGGAGGGGAAGCTGTCCTGTGTCTGAGTGAGCCCTCTCT
AGCTCCTTGGCTcacttcctctgccccacccctttccccccctcgcacTA
TGATTTTCTCGGTCCCTCAGCTCACCGACTTGACCAAGCCCCGTATCCTT
CTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTTTT
CCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGCCG
TCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCTGG
GATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGtaacggagggga
gggagggggagggggaagggaattGGGCGGGAGCATGacccaggagggag
aaggggagggtccgaaagagggagagcttcTGGACGAAGTCGGCGTCTTC
GGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCCTA
CCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAGCG
TGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGagac
ctcttcctttcgGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAACA
CCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGTTT
CATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTTCC
AAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTGCT
CAACTACCTAATCAGCGCCTGCAAGATGGAGAAatctttcctcttcgacG
TGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGCAG
ACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCCTG
TATCTATGGGTATGtcgtgggggaagagaggcaggCTGGGGGGCCACTGG
GCCGAAACATGATTTTCGGGTGACTCCATGGGAAGTGTAGCATGCTTTGT
TCTTTGAGCGACTCGGTAGCGCATATGCACGGCTACAATATTTTAATTCC
GAAATGCTGCTGTGAGGGATGCTGTGATGGGCGACAtcattttctcccct
tctcacTTCTTTGAAAATACATTGCTCTCACTTTCTGATGCTATAGTGTC
AAATAcgacgcggagggggaggcgcagggCCCAGTCTACGACTCAGACTC
CTCCTCGACGATCCACCTTAGCAATGGCATGGTCCTCTACCTCCGAGAAG
TGGACGAGTGAGTAACGAGGGCCGGACGGATAGGGATTTGTTGTTGCGAC
CCGCGTGAATATCAACCGAAAATATGCGGTTATAATTTGTATCTGTGCAC
CACCTCGAATGTCAAATCTAACTTTCATTTTGACTATCCAAACAGCTATC
TCGCCTTTGTCGGACTGATGCGGGCGGAAAATTTTCAAAAGAAAGGCCTG
ATTGATTTTAACATTGACTGCCTGAAACGTTCGTTAGGGCGTCTCTCAAG
CGAgggtggaagtgggggaggtgggaaaggacaTGTTCacgaagaaaaga
gaaacaTCATGAGCGGCGCGTCTCGCAAAGGTACTCCCGATCCCTACCAG
AGAATAAGGAATGGGCCAGCGTCGATGAGCGACTTATTAGAAATAAAGTA
AAAACATATCTTCGACACCGCAAATTACTCTGCAACTCATGAAATATCGA
GTCGGAAGGCTTATGATACAATAATGTTGATTCAGACAGCTTATTATAAC
GATGCTATGTATCTTAAGGTTGACGCGGCAACAGTTTGCCCACCGGATGC
GTGACCTGGTTTGCTCGATGTTCTATGACTGTATTGTTGTAGTACAGCGT
CTCACTTCCTGACACTCTCTGCGACATGGACACAGTCACTGTACATACAA
CTTATGTATCTGCGACTGACACTGCTACGACACACGTTGTCAAGAATGCA
AGGATACGTTTCCATGTCGTCGAACGTACGACAACAGACATGAAGAAAAG
CATTTTCcgcaaagaaaagaaatgaaaaaATGTTTGA

Coding sequence (CDS) from alignment at KK037252.1:272086..274522+

>rna9280 ID=rna9280|Name=rna9280|organism=Nannochloropsis gaditana|type=CDS|length=4956bp|location=Sequence derived from alignment at KK037252.1:272086..274522+ (Nannochloropsis gaditana)
ATGGCTCTCGAGTACACTGACGAGCAGCAAATGCTCACCGACTTGACCAA
GCCCCGTATCCTTCTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTT
TACGCGTCGTTTTCCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAG
AGTACCCACGCCGTCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCA
GTTTCAAATCTGGGATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCC
GtaacggaggggagggagggggagggggaagggaattGGGCGGGAGCATG
acccaggagggagaaggggagggtccgaaagagggagagcttcTGGACGA
AGTCGGCGTCTTCGGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCAC
AGGACGAGCCCTACCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCC
CGGGGCCAGAGCGTGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAA
GGTGGACGGagacctcttcctttcgGACGAGCACAAGGTCGACTGCCAGC
GTGACGTCCAACACCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAG
CACGTGGAGGTTTCATGTTTTCTCACCTCGATTTACGACCACTCGATCTT
CGAGGCCTTTTCCAAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGA
TGGAGAATCTGCTCAACTACCTAATCAGCGCCTGCAAGATGGAGAAatct
ttcctcttcgacGTGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCC
AGTTGACATGCAGACGTACGAGATGTGCGTGGATATGATCGACGTGGTCG
TTGACGTCTCCTGTATCTATGGTGTCAAATAcgacgcggagggggaggcg
cagggCCCAGTCTACGACTCAGACTCCTCCTCGACGATCCACCTTAGCAA
TGGCATGGTCCTCTACCTCCGAGAAGTGGACGACTATCTCGCCTTTGTCG
GACTGATGCGGGCGGAAAATTTTCAAAAGAAAGGCCTGATTGATTTTAAC
ATTGACTGCCTGAAACGTTCGTTAGGGCGTCTCTCAAGCGAgggtggaag
tgggggaggtgggaaaggacaTGTTCacgaagaaaagagaaacaTCATGA
GCGGCGCGTCTCGCAAAGGTACTCCCGATCCCTACCAGAGAATAAGGAAT
GGGCCAGCGTCGATGAGCGACTTATTAGAAATAAAGTAAATGGCTCTCGA
GTACACTGACGAGCAGCAAATGCTCACCGACTTGACCAAGCCCCGTATCC
TTCTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTT
TTCCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGC
CGTCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCT
GGGATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGtaacggaggg
gagggagggggagggggaagggaattGGGCGGGAGCATGacccaggaggg
agaaggggagggtccgaaagagggagagcttcTGGACGAAGTCGGCGTCT
TCGGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCC
TACCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAG
CGTGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGag
acctcttcctttcgGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAA
CACCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGT
TTCATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTT
CCAAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTG
CTCAACTACCTAATCAGCGCCTGCAAGATGGAGAAatctttcctcttcga
cGTGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGC
AGACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCC
TGTATCTATGGTGTCAAATAcgacgcggagggggaggcgcagggCCCAGT
CTACGACTCAGACTCCTCCTCGACGATCCACCTTAGCAATGGCATGGTCC
TCTACCTCCGAGAAGTGGACGACTATCTCGCCTTTGTCGGACTGATGCGG
GCGGAAAATTTTCAAAAGAAAGGCCTGATTGATTTTAACATTGACTGCCT
GAAACGTTCGTTAGGGCGTCTCTCAAGCGAgggtggaagtgggggaggtg
ggaaaggacaTGTTCacgaagaaaagagaaacaTCATGAGCGGCGCGTCT
CGCAAAGGTACTCCCGATCCCTACCAGAGAATAAGGAATGGGCCAGCGTC
GATGAGCGACTTATTAGAAATAAAGTAAATGGCTCTCGAGTACACTGACG
AGCAGCAAATGCTCACCGACTTGACCAAGCCCCGTATCCTTCTTATGGGC
CCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCGTTTTCCAAAAAAT
GCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCACGCCGTCGACATCC
GCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAATCTGGGATTTCCCC
GGAGATTTTTTTTTCTATCGTGTGAGCCGtaacggaggggagggaggggg
agggggaagggaattGGGCGGGAGCATGacccaggagggagaaggggagg
gtccgaaagagggagagcttcTGGACGAAGTCGGCGTCTTCGGCGTCCCC
GCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGCCCTACCACGAGGC
CTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAGAGCGTGAACCCGT
CGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGGagacctcttcctt
tcgGACGAGCACAAGGTCGACTGCCAGCGTGACGTCCAACACCGGATCGC
CCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAGGTTTCATGTTTTC
TCACCTCGATTTACGACCACTCGATCTTCGAGGCCTTTTCCAAGATCGTC
CAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATCTGCTCAACTACCT
AATCAGCGCCTGCAAGATGGAGAAatctttcctcttcgacGTGGTCAGCC
GCCTTTATCTGGCCACGGACTCGAATCCAGTTGACATGCAGACGTACGAG
ATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCTCCTGTATCTATGG
TGTCAAATAcgacgcggagggggaggcgcagggCCCAGTCTACGACTCAG
ACTCCTCCTCGACGATCCACCTTAGCAATGGCATGGTCCTCTACCTCCGA
GAAGTGGACGACTATCTCGCCTTTGTCGGACTGATGCGGGCGGAAAATTT
TCAAAAGAAAGGCCTGATTGATTTTAACATTGACTGCCTGAAACGTTCGT
TAGGGCGTCTCTCAAGCGAgggtggaagtgggggaggtgggaaaggacaT
GTTCacgaagaaaagagaaacaTCATGAGCGGCGCGTCTCGCAAAGGTAC
TCCCGATCCCTACCAGAGAATAAGGAATGGGCCAGCGTCGATGAGCGACT
TATTAGAAATAAAGTAAATGGCTCTCGAGTACACTGACGAGCAGCAAATG
CTCACCGACTTGACCAAGCCCCGTATCCTTCTTATGGGCCCCCGTCGCAG
TGGAAAAACCAGCATTTTACGCGTCGTTTTCCAAAAAATGCCTCCCCACG
AAACTTTGTTTCTGGAGAGTACCCACGCCGTCGACATCCGCTTGGCCAAC
AACAACCCCTTTCTGCAGTTTCAAATCTGGGATTTCCCCGGAGATTTTTT
TTTCTATCGTGTGAGCCGtaacggaggggagggagggggagggggaaggg
aattGGGCGGGAGCATGacccaggagggagaaggggagggtccgaaagag
ggagagcttcTGGACGAAGTCGGCGTCTTCGGCGTCCCCGCAGCCTTGGT
CTTCGTCTTGGATGCACAGGACGAGCCCTACCACGAGGCCTTGACCCGTC
TCGTGGACCTGGTGGCCCGGGGCCAGAGCGTGAACCCGTCGCTACATGTG
GTCGTTTTCATCCACAAGGTGGACGGagacctcttcctttcgGACGAGCA
CAAGGTCGACTGCCAGCGTGACGTCCAACACCGGATCGCCCAGGAGCTCC
GCGACGCCTCCCTTGAGCACGTGGAGGTTTCATGTTTTCTCACCTCGATT
TACGACCACTCGATCTTCGAGGCCTTTTCCAAGATCGTCCAGCGCCTTAC
TCACCAGCTGCCCGTGATGGAGAATCTGCTCAACTACCTAATCAGCGCCT
GCAAGATGGAGAAatctttcctcttcgacGTGGTCAGCCGCCTTTATCTG
GCCACGGACTCGAATCCAGTTGACATGCAGACGTACGAGATGTGCGTGGA
TATGATCGACGTGGTCGTTGACGTCTCCTGTATCTATGGTGTCAAATAcg
acgcggagggggaggcgcagggCCCAGTCTACGACTCAGACTCCTCCTCG
ACGATCCACCTTAGCAATGGCATGGTCCTCTACCTCCGAGAAGTGGACGA
CTATCTCGCCTTTGTCGGACTGATGCGGGCGGAAAATTTTCAAAAGAAAG
GCCTGATTGATTTTAACATTGACTGCCTGAAACGTTCGTTAGGGCGTCTC
TCAAGCGAgggtggaagtgggggaggtgggaaaggacaTGTTCacgaaga
aaagagaaacaTCATGAGCGGCGCGTCTCGCAAAGGTACTCCCGATCCCT
ACCAGAGAATAAGGAATGGGCCAGCGTCGATGAGCGACTTATTAGAAATA
AAGTAA

Synonyms

Publications