rna9272, rna9272 (mRNA) Nannochloropsis gaditana

Overview
Namerna9272
Unique Namerna9272
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1438
Alignment locationKK037252.1:257393..258324 +

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Properties
Property NameValue
Productring finger protein 10
Orig transcript idgnl|cribi|Naga_100147g1.4594.mrna
Orig protein idgnl|cribi|Naga_100147g1.4594
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:257393..258324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100147g1gene8994Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9272rna9272-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21413.1cds9242Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9272 ID=rna9272|Name=rna9272|organism=Nannochloropsis gaditana|type=mRNA|length=1438bp
ATGAAATATACCTCCAATACGCACTTAAGTAAGAAAGAAAGGACCGAGAA
ATGTACCAGTTTGTTTTTTTTCCTTGCGGATCGCCTAGTCTGCCAAGCTC
CCCGACAGCGAGGACGACGCACGAGGCACTCGGAGACGAGCTCATCGACC
ATAGATGTGCTCTTTGCGCTGTTACGTTTCAATTTCTCAACCGATCTCCG
CTTGACAATCTTTAACAGACCTAGGTTTCCGCTCTTGGCGCCGGAATCTG
CCACTGCACGAATGCCGCCATCACAAGCACATCCTAGTAGAGAAACAAGC
TTCTCCCCACCTACCCTCCTCCTCCAGCTCCTCCTTCTTTTCCCGTCCCT
GCTGCCCATCACGGCTTTCCTTACCAGCCCCCTGTATAAGTCCTATTCTT
TTCCACCCATTCCGTCCGTGGGCGCGTCTCCGATATCGTATACGCGTCAG
CCCAGCCGCCTCATCCTCTCATCCTGGGTCGATACCAAGGTAGAGATCGA
GGTGCCAGCCACGCCCGAGGCGTGTTATGCGCTGTACTCTCAGCTCGAAG
AGCACCCTCGTTGGAGCCCATGGCTCAGGTCTGTGCAGTTTCTCGACAAG
GTGGAACGGATTTCGGAATGGACGTTGGAGTCCCGTGGCTTCACTGTGGC
GTGGAAGGCGCAAAATACGATCGAGGAACCCGGGCGGCGCATCTCCTGGG
AGAGCAGGACGGGTTTGCCTAACCGGGGCCTGGTGACATTTGAGGAGCGG
CGGCCCGGGATGACGAGCATGGCCTTGACCATCTCATACAGTGTGCCCAA
GCCCATCGCCAAGCTCGGGGACGTGGGTCTGGTGAAGAGGTACATCGAGA
GCACGCTCCAGAGCGACCTGACGAGATATAGGCAGGTGTTGATGAAGGAG
ATACGCGAGAAGAGGATAGAGGCGAGCGGGGGGCTCGACGAGTAAGACAG
GGTAAGGTTGGGGGACGAAGGGAGGGAGGAAGGAAGGGCCGGGGGAGGGC
TTGGTGAAAGCCTTGCCCGTGGCCCTCGGACTCAGCAGCATGAGGCGCCC
GGGAAGGAAGAAGCCGAGTCAAAACGGAGCAAATTGTGTCACAAAAGTTT
CGGTGGCGCTTTGGCGTCTACGCGTTCGTGGTGGGCAAGGAACGGCAGAG
GAGCAGGAGCGATGGAGGGGAAGGGTAAAGAGAGAGGGCAATGAAGGCGA
TTGAGACAGCTACAGTCACAGCGCGCGCGTCGTTTTCTCTTGGAGGAGCG
TGTTCAAAGCACCTGGACATGTCTAGGAATGAGGAGCTGGGAGGGAGGCT
GGGAAGGACGAGGGGGGGGGAGAGAGGGGCAAAAGGGGCGGACCGAGGCG
GCCAGGCAAGAGGAGGAAGGCACGTCAAGGACGCCGTCGTGGGCTGGGCG
GCAGGCACAGGGTGTGCGACTATGAGAAAACCAAGAGC
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protein sequence of rna9272

>rna9272-protein ID=rna9272-protein|Name=rna9272|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
HPFACRLSPPPYPVSAWSFLPSCPPPPRALRRGLPHGLGACGPRPPPFPH
PHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLEEEGCVRRCPMCLEHI
HQSDLRPLEAWSPSLPASSPPLSASPSPPSSSAESEEAREEEAGREERVK
FLLLARTKGSLTPRVVEGGGGGGGGENRVRGRSSSVGSEEEGGWPPRTG
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mRNA from alignment at KK037252.1:257393..258324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9272 ID=rna9272|Name=rna9272|organism=Nannochloropsis gaditana|type=mRNA|length=932bp|location=Sequence derived from alignment at KK037252.1:257393..258324+ (Nannochloropsis gaditana)
CATCCTTTCGCCTGCCGTTTATCCCCGCCTCCCTACCCAGTTTCCGCCTg
gtcctttctcccctcgtgcccccctccaccccgcgcTCTTCGACGCGGAC
TCCCCCATGGACTGGGAGCATGtggacctcgtcctcctcccttccctcat
ccccacctccccccttgccccatcTGCTTCGACCATCCGCGTGCTGCCCA
GATCACGCGCTGCGGGCATCACTACTGTGCTCCCTGCGTCTTGAGGTatc
tggaagaagaaggatgcGTTCGCCGCTGCCCCATGTGCCTGGAGCACATC
CACCAAAGCGACTTGAGGCCCCTGGAGGCCTggtcgccttcccttcctgc
ctcatcACCGccgctctccgcctccccgtcaccgccctcctcgtctgctg
agtccgaggaggcgagggaggaggaggcaggccgGGAGGAACGGGTGAAG
TTCCTGCTGTTGGCGCGCACGAAGGGGTCACTGACGCCGCgggtggtgga
aggagggggaggagggggagggggggagaaccGGGTGCGGGGAAGGAGTA
GCAGCgtggggagtgaggaggaagggggctggCCCCCCCGGACTGGCtga
ggccctggaggaggaaggaaagtgtTCCTCCGGGAAGGTGTCCTTCCTGG
GTACccgggcttcctcccccccttcggccacgcccctgccgcgtcttctc
ctccctcgcgtggGGTCGCCCGAGgctgccttttcccgcctcatcctctc
ctcgtGGGAGCAAGAAGTGGCGACCTTAAcccgggaggcggcggagttgg
tggcggcgcgggaggaaagcgtcggggtggagggcgccgAGTGGATCCCT
TTCATCgacgaggccttgaagaTGCTGGACCGGCGGCGCGAGAAATATGC
TGCTCGGAGGCcgggaggccagggcctggTCG
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Coding sequence (CDS) from alignment at KK037252.1:257393..258324+

>rna9272 ID=rna9272|Name=rna9272|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at KK037252.1:257393..258324+ (Nannochloropsis gaditana)
CATCCTTTCGCCTGCCGTTTATCCCCGCCTCCCTACCCAGTTTCCGCCTg
gtcctttctcccctcgtgcccccctccaccccgcgcTCTTCGACGCGGAC
TCCCCCATGGACTGGGAGCATGtggacctcgtcctcctcccttccctcat
ccccacctccccccttgccccatcTGCTTCGACCATCCGCGTGCTGCCCA
GATCACGCGCTGCGGGCATCACTACTGTGCTCCCTGCGTCTTGAGGTatc
tggaagaagaaggatgcGTTCGCCGCTGCCCCATGTGCCTGGAGCACATC
CACCAAAGCGACTTGAGGCCCCTGGAGGCCTggtcgccttcccttcctgc
ctcatcACCGccgctctccgcctccccgtcaccgccctcctcgtctgctg
agtccgaggaggcgagggaggaggaggcaggccgGGAGGAACGGGTGAAG
TTCCTGCTGTTGGCGCGCACGAAGGGGTCACTGACGCCGCgggtggtgga
aggagggggaggagggggagggggggagaaccGGGTGCGGGGAAGGAGTA
GCAGCgtggggagtgaggaggaagggggctggCCCCCCCGGACTGGCtga
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Synonyms
Publications