EWM21413.1, cds9242 (CDS) Nannochloropsis gaditana

Overview
NameEWM21413.1
Unique Namecds9242
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:257393..257992 +

Link to JBrowse

Properties
Property NameValue
Start range257393
Start range.
Protein idEWM21413.1
Productring finger protein 10
Partialtrue
Orig transcript idgnl|cribi|Naga_100147g1.4594.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:257393..257992 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|585101641|gb|EWM21413.1| (ring finger protein 10, partial [Nannochloropsis gaditana])

HSP 1 Score: 384.03 bits (985), Expect = 1.165e-134
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 HPFACRLSPPPYPVSAWSFLPSCPPPPRALRRGLPHGLGACGPRPPPFPHPHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLEEEGCVRRCPMCLEHIHQSDLRPLEAWSPSLPASSPPLSASPSPPSSSAESEEAREEEAGREERVKFLLLARTKGSLTPRVVEGGGGGGGGENRVRGRSSSVGSEEEGGWPPRTG 199
            HPFACRLSPPPYPVSAWSFLPSCPPPPRALRRGLPHGLGACGPRPPPFPHPHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLEEEGCVRRCPMCLEHIHQSDLRPLEAWSPSLPASSPPLSASPSPPSSSAESEEAREEEAGREERVKFLLLARTKGSLTPRVVEGGGGGGGGENRVRGRSSSVGSEEEGGWPPRTG
Sbjct:    1 HPFACRLSPPPYPVSAWSFLPSCPPPPRALRRGLPHGLGACGPRPPPFPHPHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLEEEGCVRRCPMCLEHIHQSDLRPLEAWSPSLPASSPPLSASPSPPSSSAESEEAREEEAGREERVKFLLLARTKGSLTPRVVEGGGGGGGGENRVRGRSSSVGSEEEGGWPPRTG 199          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|983144580|gb|KWU42574.1| (hypothetical protein RHOSPDRAFT_21023, partial [Rhodotorula sp. JG-1b])

HSP 1 Score: 79.7221 bits (195), Expect = 6.535e-14
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0
Query:   53 LPPCPICFDHPRAAQITRCGHHYCAPCVLRYL---EEEGCVRRCPMCLEHIHQSDLRPLEAWSPSLPASSPPLSASPSPPSSSAESEEAREEEAGREERVKFLLLAR 156
            +P CPIC   P A ++T+CGH YC PC+L YL   E     R+CP+C + +H  DL+ ++ + P LPA+ P   A+ SPP +S E  +A    A   ER+K  L+ R
Sbjct:  100 VPACPICLSEPVAPRMTKCGHVYCYPCILHYLALAESGNKTRQCPICHDSVHSKDLKSVKWFFPDLPAAVP---AATSPP-ASVEPVDADLARALDRERLKMRLIRR 202          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|675864266|ref|XP_009017693.1| (hypothetical protein HELRODRAFT_191771 [Helobdella robusta] >gi|555701191|gb|ESO04424.1| hypothetical protein HELRODRAFT_191771 [Helobdella robusta])

HSP 1 Score: 75.8702 bits (185), Expect = 1.215e-12
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 0
Query:   54 PPCPICFDHPRAAQITRCGHHYCAPCVLRYLE-EEGCVRRCPMCLEHIHQSDLRPLEA 110
            P CPIC   P+AA+ITRCGH YC PC+L YL  ++   R+CP+C + +H +DL+ ++A
Sbjct:   94 PYCPICLYPPKAAKITRCGHIYCWPCILHYLSLDDKSWRKCPICSDAVHSNDLKSVQA 151          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|498970249|ref|XP_004526763.1| (RING finger protein 10 [Ceratitis capitata])

HSP 1 Score: 72.4034 bits (176), Expect = 1.918e-11
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 0
Query:   54 PPCPICFDHPRAAQITRCGHHYCAPCVLRYLE-EEGCVRRCPMCLEHIHQSDLRPLEAWSPSLPASSPPLSASPSPPSSSAESEEAREEEAGREERVKFLLLARTKGSL 161
            P CPIC   P AA++TRCGH YC PC+L YL   +   R+CP+C E IH +DL+                         S   E+ R+   G E  + F L+ R KGS+
Sbjct:  245 PQCPICLYPPIAAKLTRCGHAYCWPCILHYLALSDKTWRKCPICYEAIHTADLK-------------------------STTIEQQRQFHIGDE--ITFHLMCRKKGSM 326          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|906475291|gb|KNC34676.1| (hypothetical protein FF38_09149 [Lucilia cuprina])

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-11
Identity = 41/112 (36.61%), Postives = 54/112 (48.21%), Query Frame = 0
Query:   51 PHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLE-EEGCVRRCPMCLEHIHQSDLRPLEAWSPSLPASSPPLSASPSPPSSSAESEEAREEEAGREERVKFLLLARTKGSL 161
            P  P CPIC   P AA++TRCGH YC PCVL YL   +   R+CP+C + IH  DL+                       S+S   ++A    +    R+ F L+ R KGSL
Sbjct:  242 PDEPQCPICLYPPVAAKVTRCGHVYCWPCVLHYLSLSDKTWRKCPICYDAIHVGDLK-----------------------SASIVQQQAFNANS----RITFRLMRRKKGSL 326          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|907613982|ref|XP_013118715.1| (PREDICTED: RING finger protein 10 [Stomoxys calcitrans])

HSP 1 Score: 71.2478 bits (173), Expect = 5.084e-11
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0
Query:   51 PHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLE-EEGCVRRCPMCLEHIHQSDLR 106
            P  P CPIC   P AA++TRCGH YC PCVL YL   +   R+CP+C + +H  DL+
Sbjct:  233 PEEPQCPICLYPPSAAKVTRCGHVYCWPCVLHYLSLSDKSWRKCPICYDAVHVGDLK 289          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|751805056|ref|XP_011212742.1| (PREDICTED: RING finger protein 10 [Bactrocera dorsalis])

HSP 1 Score: 71.2478 bits (173), Expect = 6.006e-11
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   54 PPCPICFDHPRAAQITRCGHHYCAPCVLRYLE-EEGCVRRCPMCLEHIHQSDLR 106
            P CPIC   P AA++TRCGH YC PC+L YL   +   R+CP+C E IH +DL+
Sbjct:  243 PQCPICLYPPIAAKLTRCGHAYCWPCILHYLALSDKTWRKCPICYEAIHTTDLK 296          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|762166885|ref|XP_011421757.1| (PREDICTED: RING finger protein 10 [Crassostrea gigas])

HSP 1 Score: 70.8626 bits (172), Expect = 6.354e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   48 FPHPHLPPCPICFDHPRAAQITRCGHHYCAPCVLRYLEE-EGCVRRCPMCLEHIHQSDLR 106
            F H  + PCPIC + P AA++TRCGH YC PC+L YL   E   R+CP+C E +H+ DL+
Sbjct:  200 FGH-EVTPCPICLEQPIAAKMTRCGHIYCWPCILHYLALGEQTWRKCPICYEAVHEKDLK 258          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|1098650111|ref|XP_018789989.1| (PREDICTED: RING finger protein 10 [Bactrocera latifrons])

HSP 1 Score: 70.8626 bits (172), Expect = 6.527e-11
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   54 PPCPICFDHPRAAQITRCGHHYCAPCVLRYLE-EEGCVRRCPMCLEHIHQSDLR 106
            P CPIC   P AA++TRCGH YC PC+L YL   +   R+CP+C E IH +DL+
Sbjct:  243 PQCPICLYPPIAAKLTRCGHAYCWPCILHYLALSDKTWRKCPICYEAIHTADLK 296          
BLAST of EWM21413.1 vs. NCBI_GenBank
Match: gi|929358679|ref|XP_014088648.1| (PREDICTED: RING finger protein 10 [Bactrocera oleae])

HSP 1 Score: 70.8626 bits (172), Expect = 6.550e-11
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   54 PPCPICFDHPRAAQITRCGHHYCAPCVLRYLE-EEGCVRRCPMCLEHIHQSDLR 106
            P CPIC   P AA++TRCGH YC PC+L YL   +   R+CP+C E IH +DL+
Sbjct:  243 PQCPICLYPPIAAKLTRCGHAYCWPCILHYLALSDKTWRKCPICYEAIHTADLK 296          
The following BLAST results are available for this feature:
BLAST of EWM21413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101641|gb|EWM21413.1|1.165e-134100.00ring finger protein 10, partial [Nannochloropsis g... [more]
gi|983144580|gb|KWU42574.1|6.535e-1441.12hypothetical protein RHOSPDRAFT_21023, partial [Rh... [more]
gi|675864266|ref|XP_009017693.1|1.215e-1250.00hypothetical protein HELRODRAFT_191771 [Helobdella... [more]
gi|498970249|ref|XP_004526763.1|1.918e-1136.70RING finger protein 10 [Ceratitis capitata][more]
gi|906475291|gb|KNC34676.1|1.920e-1136.61hypothetical protein FF38_09149 [Lucilia cuprina][more]
gi|907613982|ref|XP_013118715.1|5.084e-1150.88PREDICTED: RING finger protein 10 [Stomoxys calcit... [more]
gi|751805056|ref|XP_011212742.1|6.006e-1153.70PREDICTED: RING finger protein 10 [Bactrocera dors... [more]
gi|762166885|ref|XP_011421757.1|6.354e-1151.67PREDICTED: RING finger protein 10 [Crassostrea gig... [more]
gi|1098650111|ref|XP_018789989.1|6.527e-1153.70PREDICTED: RING finger protein 10 [Bactrocera lati... [more]
gi|929358679|ref|XP_014088648.1|6.550e-1153.70PREDICTED: RING finger protein 10 [Bactrocera olea... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9272rna9272Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications