rna9271, rna9271 (mRNA) Nannochloropsis gaditana

Overview
Namerna9271
Unique Namerna9271
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2104
Alignment locationKK037252.1:254344..255781 -

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Properties
Property NameValue
ProductSTART-like domain protein
Orig transcript idgnl|cribi|Naga_100307g1.2277.mrna
Orig protein idgnl|cribi|Naga_100307g1.2277
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:254344..255781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100307g1gene8993Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21432.1cds9241Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9271rna9271-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9271 ID=rna9271|Name=rna9271|organism=Nannochloropsis gaditana|type=mRNA|length=2104bp
AAAAAAGGCAAAGGAAGTGCGTGCGAAGAGCCAGGAGGCAGCACCATGGC
GGAGACGGACGCTCCAGACCAGGAGAGGCAAGACGAGGCTCAAGACAAGA
TGATTGCCGAGGAGTACAAGATCTGGAAAAAGAACTCCCCATTTCTTTAC
GACCTAGTCATGACACACGCCCTGGAATGGCCGTCACTGACCGTGCAATG
GCTTCCTGGTGTAAAAACGGCGGAGAACAACCCTGAATACGCGACGCACA
AGCTCTTGTTTGGGACGCACACTGCGGCGGGGGAACAGAACTACCTAATT
CAAGCCAACGTGAACTTGCCCTTACCGGACACAGAGATCGACGCCAAGAA
GTACGAGGACGAACGCGGGGAGGTGGGGGGCTTCGGAGGTATGAACTGCA
AGGTGGAGGTGAAGGTGAAGATCGCGCACGAGGGGGAGGTGAACCGGGCC
CGATACATGCCGCAGAACCCCTTCGTGGTCGCCACCAAGGGCCCGAGCGC
CGACGTCTTCGTCTTCGACATCACCAAACACCCGTCCGCCCCCGGACCCA
ACGACAGCTTCCGGCCCGAGCACGTTTGCAAAGGGCACGCGCGCGAGGGC
TACGGGTTGGCCTGGTCGCCTGCGGCCCCCGGGCAGCTCTTGAGCGGGAG
CGACGACGCGCGCGTCTGTCTCTGGGACATGACCCAGGCGGGGAGGGTGG
TGGAGGAGGTGCGAGTCTTCCGGGGGCACACCTCGGTGGTGGAGGACGTG
GCATGGCACAGCGCCCACCCGCATCTCTTCGGCTCCGTCAGCGACGACAA
GAGCCTGGCGCTCTGGGACGTCCGGGAAAGCGGGAGCCAGCCCTCCCACG
CCCGGGCAGGGGCCCACGAGGACTTTGTCAACTGCCTCTCCTTCTCCCCC
CACTCGGACTTCTTGTTCCTGACGGGCTCGGCGGATCGGAGCGTGCGGCT
CTGGGACCTTCGGAGTCTGAGTGCCCCTCTGCATACTTTCGAGGGCCACG
AGGACGAGGTCTTCCAGGTCAAGTGGGCACCATTCCACGAGAACGTCTTC
GCCTCCTGCGGCGCGGACCGACGTGTGAACGTGTGGGATATTGCCAAGAT
TGGGGAGGAACAGTCTCAGGAGGACGCCGCGGACGGCCCGCCCGAGTTGC
TCTTCATCCACGGGGGGCACACGGCCAAGGTCAGCGACTTGGCCTGGAAC
GAGGAGGACCCCTGGGTGGTGGCGAGCGTGGCGGAGGACAACATACTGCA
GATATGGCAGATGGCCGACAACATATATATGATGGAGGAGGAGGAGGAGG
AAATGGGGGTGGGGGCGGGGGCGGCTTGCGCGACGAGGATTTGGAGGGAC
CGGGGGGCGGAAAGTAGGGAGGGAAGAAGGGAGGGAGGGAGGGAGGGAGG
GAGATATGGAAAGGATGGGCTTGGTGGAGTGAGAGGGGACTGGGACAGTA
AGTTTGTAAGGACTCACGCGTGGCATGCATCCAGGGGACGGCGGGGTGGG
ATGAGAGGGGCTAGGGGGGAGGGAAGGGCACGGAGAGCGCGCCAGGGGGG
GGTCCGGCGTCCCACGGTGAGAGGGATCGGGAGAGAAACGCCCTGTCTGA
AGAAGTGGAGTCAGGGTACACAGACACGAACCAAGTACGCATAGCTCTTG
GTTTTCTCATAGTCGCACACCCTGTGCCTGCCGCCCAGCCCACGACGGCG
TCCTTGACGTGCCTTCCTCCTCTTGCCTGGCCGCCTCGGTCCGCCCCTTT
TGCCCCTCTCTCCCCCCCCCTCGTCCTTCCCAGCCTCCCTCCCAGCTCCT
CATTCCTAGACATGTCCAGGTGCTTTGAACACGCTCCTCCAAGAGAAAAC
GACGCGCGCGCTGTGACTGTAGCTGTCTCAATCGCCTTCATTGCCCTCTC
TCTTTACCCTTCCCCTCCATCGCTCCTGCTCCTCTGCCGTTCCTTGCCCA
CCACGAACGCGTAGACGCCAAAGCGCCACCGAAACTTTTGTGACACAATT
TGCTCCGTTTTGACTCGGCTTCTTCCTTCCCGGGCGCCTCATGCTGCTGA
GTCCGAGGGCCACGGGCAAGGCTTTCACCAAGCCCTCCCCCGGCCCTTCC
TTCC
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protein sequence of rna9271

>rna9271-protein ID=rna9271-protein|Name=rna9271|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MKYTSNTHLSKKERTEKCTSLFFFLADRLVCQAPRQRGRRTRHSETSSST
IDVLFALLRFNFSTDLRLTIFNRPRFPLLAPESATARMPPSQAHPSRETS
FSPPTLLLQLLLLFPSLLPITAFLTSPLYKSYSFPPIPSVGASPISYTRQ
PSRLILSSWVDTKVEIEVPATPEACYALYSQLEEHPRWSPWLRSVQFLDK
VERISEWTLESRGFTVAWKAQNTIEEPGRRISWESRTGLPNRGLVTFEER
RPGMTSMALTISYSVPKPIAKLGDVGLVKRYIESTLQSDLTRYRQVLMKE
IREKRIEASGGLDE
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mRNA from alignment at KK037252.1:254344..255781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9271 ID=rna9271|Name=rna9271|organism=Nannochloropsis gaditana|type=mRNA|length=1438bp|location=Sequence derived from alignment at KK037252.1:254344..255781- (Nannochloropsis gaditana)
ATGAAATATACCTCCAATACGCACTTAAGTAAGAAAGAAAGGACCGAGAA
ATGTACCAGTTTGTTTTTTTTCCTTGCGGATCGCCTAGTCTGCCAAGCTC
CCCGACAGCGAGGACGACGCACGAGGCACTCGGAGACGAGCTCATCGACC
ATAGATGTGCTCTTTGCGCTGTTACGTTTCAATTTCTCAACCGATCTCCG
CTTGACAATCTTTAACAGACCTAGGTTTCCGCTCTTGGCGCCGGAATCTG
CCACTGCACGAATGCCGCCATCACAAGCACATCCTAGTAGAGAAACAAGC
TTCTCCCCACCTACCCTCCTCCTCCAGCTCCTCCTTCTTTTCCCGTCCCT
GCTGCCCATCACGGCTTTCCTTACCAGCCCCCTGTATAAGTCCTATTCTT
TTCCACCCATTCCGTCCGTGGGCGCGTCTCCGATATCGTATACGCGTCAG
CCCAGCCGCCTCATCCTCTCATCCTGGGTCGATACCAAGGTAGAGATCGA
GGTGCCAGCCACGCCCGAGGCGTGTTATGCGCTGTACTCTCAGCTCGAAG
AGCACCCTCGTTGGAGCCCATGGCTCAGGTCTGTGCAGTTTCTCGACAAG
GTGGAACGGATTTCGGAATGGACGTTGGAGTCCCGTGGCTTCACTGTGGC
GTGGAAGGCGCAAAATACGATCGAGGAACCCGGGCGGCGCATCTCCTGGG
AGAGCAGGACGGGTTTGCCTAACCGGGGCCTGGTGACATTTGAGGAGCGG
CGGCCCGGGATGACGAGCATGGCCTTGACCATCTCATACAGTGTGCCCAA
GCCCATCGCCAAGCTCGGGGACGTGGGTCTGGTGAAGAGGTACATCGAGA
GCACGCTCCAGAGCGACCTGACGAGATATAGGCAGGTGTTGATGAAGGAG
ATACGCGAGAAGAGGATAGAGGCGAGCGGGGGGCTCGACGAGTAAGACAG
GGTAAGGTTGGGGGACGAAGGGAGGGAGGAAGGAAGGGCCGGGGGAGGGC
TTGGTGAAAGCCTTGCCCGTGGCCCTCGGACTCAGCAGCATGAGGCGCCC
GGGAAGGAAGAAGCCGAGTCAAAACGGAGCAAATTGTGTCACAAAAGTTT
CGGTGGCGCTTTGGCGTCTACGCGTTCGTGGTGGGCAAGGAACGGCAGAG
GAGCAGGAGCGATGGAGGGGAAGGGTAAAGAGAGAGGGCAATGAAGGCGA
TTGAGACAGCTACAGTCACAGCGCGCGCGTCGTTTTCTCTTGGAGGAGCG
TGTTCAAAGCACCTGGACATGTCTAGGAATGAGGAGCTGGGAGGGAGGCT
GGGAAGGACGAGGGGGGGGGAGAGAGGGGCAAAAGGGGCGGACCGAGGCG
GCCAGGCAAGAGGAGGAAGGCACGTCAAGGACGCCGTCGTGGGCTGGGCG
GCAGGCACAGGGTGTGCGACTATGAGAAAACCAAGAGC
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Coding sequence (CDS) from alignment at KK037252.1:254344..255781-

>rna9271 ID=rna9271|Name=rna9271|organism=Nannochloropsis gaditana|type=CDS|length=945bp|location=Sequence derived from alignment at KK037252.1:254344..255781- (Nannochloropsis gaditana)
ATGAAATATACCTCCAATACGCACTTAAGTAAGAAAGAAAGGACCGAGAA
ATGTACCAGTTTGTTTTTTTTCCTTGCGGATCGCCTAGTCTGCCAAGCTC
CCCGACAGCGAGGACGACGCACGAGGCACTCGGAGACGAGCTCATCGACC
ATAGATGTGCTCTTTGCGCTGTTACGTTTCAATTTCTCAACCGATCTCCG
CTTGACAATCTTTAACAGACCTAGGTTTCCGCTCTTGGCGCCGGAATCTG
CCACTGCACGAATGCCGCCATCACAAGCACATCCTAGTAGAGAAACAAGC
TTCTCCCCACCTACCCTCCTCCTCCAGCTCCTCCTTCTTTTCCCGTCCCT
GCTGCCCATCACGGCTTTCCTTACCAGCCCCCTGTATAAGTCCTATTCTT
TTCCACCCATTCCGTCCGTGGGCGCGTCTCCGATATCGTATACGCGTCAG
CCCAGCCGCCTCATCCTCTCATCCTGGGTCGATACCAAGGTAGAGATCGA
GGTGCCAGCCACGCCCGAGGCGTGTTATGCGCTGTACTCTCAGCTCGAAG
AGCACCCTCGTTGGAGCCCATGGCTCAGGTCTGTGCAGTTTCTCGACAAG
GTGGAACGGATTTCGGAATGGACGTTGGAGTCCCGTGGCTTCACTGTGGC
GTGGAAGGCGCAAAATACGATCGAGGAACCCGGGCGGCGCATCTCCTGGG
AGAGCAGGACGGGTTTGCCTAACCGGGGCCTGGTGACATTTGAGGAGCGG
CGGCCCGGGATGACGAGCATGGCCTTGACCATCTCATACAGTGTGCCCAA
GCCCATCGCCAAGCTCGGGGACGTGGGTCTGGTGAAGAGGTACATCGAGA
GCACGCTCCAGAGCGACCTGACGAGATATAGGCAGGTGTTGATGAAGGAG
ATACGCGAGAAGAGGATAGAGGCGAGCGGGGGGCTCGACGAGTAA
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Synonyms
Publications