rna9258, rna9258 (mRNA) Nannochloropsis gaditana

Overview
Namerna9258
Unique Namerna9258
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2962
Alignment locationKK037252.1:224435..225111 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g10.461.mrna
Orig protein idgnl|cribi|Naga_100019g10.461
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:224435..225111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g10gene8980Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9258rna9258-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21439.1cds9228Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9258 ID=rna9258|Name=rna9258|organism=Nannochloropsis gaditana|type=mRNA|length=2962bp
GACAGGCATTAATTTGTACTGACATCTACCATAGAAAAGATCATCGCTTG
AAGATCGACTCGAATTCCCCTCCAACTCCCCTTGTACTCCTCCTGTCGGC
GTACGCGTTCGTCACAAGAAGCGGCCTGCACCACATGGCAAAGGGTACAA
AAGCCACCAAGAATGTGAAGGCCAAGGTGATGTCAGATATAAGGGCCTTG
CGGGAGCGATCGCCGTCACCTTCAGAGGATGGTGAAAATCATAACGATCC
TCCTGCTCACGTTGGTGGTATTGTCCGGCGCATGATACCATTGTCTGCCC
CTAGCATCAGCTTCGAAAATTCTCACAAAGCTCACCACTACTCGGAAGAG
GAATGGGAGAAGGTCCAGGCCTTTTCATCAATCACATATCTGCCCTTACA
CACACGTGTGTTCCAAAAATGGCTTGAAGACAACTGGATCAAGCGGGAAT
GGGACCACTGGGTAATGATGGGGTTAATTGGCTTTTTTGTCGGCATGCTT
GGGTCTACCCTTAAACTCGTCATTGAAAAAATTGTGGAGTCTAAATTCCA
CCACATCACAATCCTGCTGAAAAAAGAGGCTTTTGGACTTATGTGGTTCT
TGGCCATAGCAATGTCAATGTCTCTGGCACTGGCATCTGCAGTAGTTGTA
GTATACGGGGAGCCAGCGGCGGCGGGATCCGGTATTCCTGACATCATGGC
TTATTTGAACGGAATATCGATCCGCAAGATCTTCGGATCGAAAGCCCTTG
TCGTCAAATTTTTTTCTTGTGTATTCGCTGTATCAGCAGGGTTGTATGGC
GGACAAGAAGGACCCATGATCCACATGGGCAGCGCCATTGGTAAGATTCT
CAGCCAAGGTGTCAGCTTCTCAGGAAAATACAGCAAAATACCGGACTTCA
TCCTTTTTAAGCGCCTTCGTAATATGTATGACCGGAGAAATTTTATCAGT
GCGGGGGCCGCTGCTGGCGTGGCCTCTGCCTTTACTGCGCCCGTGGGAGG
CCTTCTTTTTGTTCTGGAGGAAATCTCCTCATTCTGGACACACAAGCTGG
CCTGGCAAATATTCTTTTGTTGTGGCGTGGCATCCTTCACCACGCAGGCG
TTTACGTCTCTTTATCGCACAGGCTCCCTCGGATCATTCTCGCGCGCCGC
CTTCAATATCGACCAAGCCATCAACTCCCAGCTGACAATGTTCCTGCCCA
CCGTCGGGGTGGGCATAATGGGAGGGCTCTTTGCTGCCCTCTTCACGTGG
GCGAACCTAAATATCTGCAAATGGCGAAATCGAAACATTGTTCCCAGGCC
CTGGGCCAGAATAGCGGAGCCTGCTGTGGTTGCCTTCCTGACCACCACCT
TGGCGGTTCTCATCCCCTACTTGTTCGAGTGTATGCCCACGCGCTGCAAA
AAGGACCCAAGTCTCCCAGGATGCACGCCGCGCTATGCGAGCAGTGATGT
GCCGGAGGAGGGCCTGATGCAATATACCTGTCAGGCGGAGGGTATGTACA
ACCCTGCAGCTACGCTGTTTTTCACCACTGGCGACAGGACTATCGAGCAC
CTGTTGAGCCGAAATACCCACTACATGTTCGACTACGGCTCACTTATCAC
ACTTTTCGTCGTCTACTTCTCCCTTTGCTGCTATACGATGGGAATGGCTC
CAGCCTTGGGTTCCATGGTTCCTGCGCTTTTAATCGGGTCGGTGCTAGGT
CGCATCGCGGGGCTGGGGGTGACGGACATCGTGGGGATTCACGAGGGGGA
AGAATTGACATGGGTGGACCCCGGCGGGTTCGCATTGATTGGAGCGGCAG
CATTTTTTGGAGGCCTAACGAGACTGACGTTCACCTTGGCGGTGGTGATG
ATCGAACTGACCGATGAGACGCACTTCTTACTCCCCATTATGACGGCGGT
CATGGTGGGAAAGTGGACCGCGGACCTGTTGATTGACTCCTTATATCACA
AATTGATCGACCTCAAGTGCTTTCCGTTCTTATCTGATGAGCCACATGTC
GAAGAATGCCTGGACCTGTATACCGTGGAGGACGTAATGGGCCGAGACGT
AGTGACCATACCGGAGATCGGCTCCGTAGCCCTCATGGCACACATTCTCG
CATCCTGCAATCATCGTGCCTTACCTGTGGTGGAAGTGACGGAGAACGGG
AACGAGGTCTTTAAAGGTATCATACTGCGGAGTCACGTTTTTTCCATCCT
GGCAAAAGAGTCCTTGTTTCTGGAGGAGGACAACCCTGTAGTTGTCTCGA
AATCGCCCTCCTTTTCCATGGGAGAGGGCGAGGAGGGAGTTACTAATTTG
CATATGGAAGCGCTCGGTATAGCGGAGCTAGTCAACTTGGACGATAAGAT
GCCAGTTACACTATTGGCTAAGACTGAGGGTGAGCGGAAGGTCATGTTGG
GGAGACTACAGGCCGCGGAGTATCATCGCCGATTTGTCACTCTGGCGCCG
TACATTGATCAGTCAAGCTATCGCATTGCCCCCACGTTCTCACTAGAACG
CGGATTCAATTTGTTTCGTACAATGGGCCTTAGTCACATAACTGTGGTGG
ATCAAAATAACGAAGTCGTGGGAATCGTGTCTCGGAAAGATTTGACCAAC
ATGAACATCTACAGAAAGCTAGAGGAGATACAAGAGAGGACAGATGAAGG
AAGGTCAAATGAGCCCGATAGATCAAAAGTTGAGTATCATGATGCAACTA
GCGGTATTATATTCCATGATTATCATGATTCTCCCGCGCCACCTCGTGTA
AGACAAACTAGACTGCGCTCTGTGCGAGATCCCGAGGTGCAAGAGAGCCA
TAGGAAAGCCATTGCGGCAGCAGGCCTTGACCAAGGCATGTTAATTTAGA
CTGAAATCACTTGTTGCGGAGCATGTGAAACAAAAATGATAACTTATATA
AAAGTGCATAGATAAAAATACTGAATGTACTGTGGAATAAAAGAAGTTTG
TGCTTTGATTGA
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protein sequence of rna9258

>rna9258-protein ID=rna9258-protein|Name=rna9258|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MPFVSLSFTRTYPPIAGKGDFGNEKLEAENCADRRSSYNAEERRSTEADF
EEDVTGQDYRDDASLPPTQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPT
LWLRVTRADGAPFIRDELARFCGIATEDTDQENEVGRWTILMSRMICSGQ
NEIEFRTGRDEEGVDACQRGLDYLIQWFSLVAPVLGLKIPPQFVQAILFS
FP
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mRNA from alignment at KK037252.1:224435..225111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9258 ID=rna9258|Name=rna9258|organism=Nannochloropsis gaditana|type=mRNA|length=677bp|location=Sequence derived from alignment at KK037252.1:224435..225111- (Nannochloropsis gaditana)
ATGCCGTTCGTATCCTTAAGCTTCACGCGCACATATCCCCCGATCGCCGG
GAAGGGGGACTTTGGGAACGAAAAGCTCGAGGCTGAGAATTGCGCTGACA
GGCGCTCGTCTTACAATGCCGAGGAAAGACGAAGCACGGAGGCAGATTTC
GAGGAAGATGTGACAGGCCAGGATTACCGCGATGACGCCTCTCTTCCTCC
AACGCAGCCATCTTCCCCCACACCTGATCGTGCACGCATTGCCGTCATGA
CGGACTGGGATTTGCACGTTTTGTACGATGAGGCCTACAGGACTCCGACA
CTCTGGTTGCGAGTCACCCGAGCCGATGGGGCCCCCTTCATTAGAGATGA
ATTGGCGCGCTTTTGCGGCATTGCCACGGAAGACACTGACCAAGAAAACG
AGGTAGGCAGGTGGACAATTTTGTCGCAAGATGAGCACCCACTTTTGGGA
CTCCCTTTTTTTTTTTGCATCCTTGTGGGACGCCCGCGAGAATGTCTCGT
ATGATATGCTCGGGCCAAAATGAAATAGAATTTAGGACCGGCAGGGACGA
GGAAGGAGTGGACGCCTGCCAGAGGGGCTTAGACTACTTGATACAATGGT
TTAGTCTTGTAGCTCCAGTGTTGGGACTGAAAATACCTCCCCAATTTGTG
CAGGCAATTTTATTCTCATTTCCATAG
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Coding sequence (CDS) from alignment at KK037252.1:224435..225111-

>rna9258 ID=rna9258|Name=rna9258|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at KK037252.1:224435..225111- (Nannochloropsis gaditana)
AATGTCTCGTATGATATGCTCGGGCCAAAATGAAATAGAATTTAGGACCG
GCAGGGACGAGGAAGGAGTGGACGCCTGCCAGAGGGGCTTAGACTACTTG
ATACAATGGTTTAGTCTTGTAGCTCCAGTGTTGGGACTGAAAATACCTCC
CCAATTTGTGCAGGCAATTTTATTCTCATTTCCATAGATGCCGTTCGTAT
CCTTAAGCTTCACGCGCACATATCCCCCGATCGCCGGGAAGGGGGACTTT
GGGAACGAAAAGCTCGAGGCTGAGAATTGCGCTGACAGGCGCTCGTCTTA
CAATGCCGAGGAAAGACGAAGCACGGAGGCAGATTTCGAGGAAGATGTGA
CAGGCCAGGATTACCGCGATGACGCCTCTCTTCCTCCAACGCAGCCATCT
TCCCCCACACCTGATCGTGCACGCATTGCCGTCATGACGGACTGGGATTT
GCACGTTTTGTACGATGAGGCCTACAGGACTCCGACACTCTGGTTGCGAG
TCACCCGAGCCGATGGGGCCCCCTTCATTAGAGATGAATTGGCGCGCTTT
TGCGGCATTGCCACGGAAGACACTGACCAAGAAAACGAGGTAGGCAGGTG
GACAATTTTAATGTCTCGTATGATATGCTCGGGCCAAAATGAAATAGAAT
TTAGGACCGGCAGGGACGAGGAAGGAGTGGACGCCTGCCAGAGGGGCTTA
GACTACTTGATACAATGGTTTAGTCTTGTAGCTCCAGTGTTGGGACTGAA
AATACCTCCCCAATTTGTGCAGGCAATTTTATTCTCATTTCCATAGATGC
CGTTCGTATCCTTAAGCTTCACGCGCACATATCCCCCGATCGCCGGGAAG
GGGGACTTTGGGAACGAAAAGCTCGAGGCTGAGAATTGCGCTGACAGGCG
CTCGTCTTACAATGCCGAGGAAAGACGAAGCACGGAGGCAGATTTCGAGG
AAGATGTGACAGGCCAGGATTACCGCGATGACGCCTCTCTTCCTCCAACG
CAGCCATCTTCCCCCACACCTGATCGTGCACGCATTGCCGTCATGACGGA
CTGGGATTTGCACGTTTTGTACGATGAGGCCTACAGGACTCCGACACTCT
GGTTGCGAGTCACCCGAGCCGATGGGGCCCCCTTCATTAGAGATGAATTG
GCGCGCTTTTGCGGCATTGCCACGGAAGACACTGACCAAGAAAACGAGGT
AGGCAGGTGGACAATTTT
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Synonyms
Publications