EWM21439.1, cds9228 (CDS) Nannochloropsis gaditana

Overview
NameEWM21439.1
Unique Namecds9228
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:224690..225111 -
Alignment locationKK037252.1:224435..224621 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21439.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g10.461.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:224690..225111 -
KK037252.1supercontigKK037252.1:224435..224621 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21439.1 vs. NCBI_GenBank
Match: gi|585101669|gb|EWM21439.1| (hypothetical protein Naga_100019g10 [Nannochloropsis gaditana])

HSP 1 Score: 416.772 bits (1070), Expect = 1.584e-147
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 
Query:    1 MPFVSLSFTRTYPPIAGKGDFGNEKLEAENCADRRSSYNAEERRSTEADFEEDVTGQDYRDDASLPPTQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIATEDTDQENEVGRWTILMSRMICSGQNEIEFRTGRDEEGVDACQRGLDYLIQWFSLVAPVLGLKIPPQFVQAILFSFP 202
            MPFVSLSFTRTYPPIAGKGDFGNEKLEAENCADRRSSYNAEERRSTEADFEEDVTGQDYRDDASLPPTQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIATEDTDQENEVGRWTILMSRMICSGQNEIEFRTGRDEEGVDACQRGLDYLIQWFSLVAPVLGLKIPPQFVQAILFSFP
Sbjct:    1 MPFVSLSFTRTYPPIAGKGDFGNEKLEAENCADRRSSYNAEERRSTEADFEEDVTGQDYRDDASLPPTQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIATEDTDQENEVGRWTILMSRMICSGQNEIEFRTGRDEEGVDACQRGLDYLIQWFSLVAPVLGLKIPPQFVQAILFSFP 202
[Close]
BLAST of EWM21439.1 vs. NCBI_GenBank
Match: gi|553177311|ref|XP_005852454.1| (hypothetical protein NGA_0728300 [Nannochloropsis gaditana CCMP526] >gi|422296080|gb|EKU23379.1| hypothetical protein NGA_0728300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 271.552 bits (693), Expect = 5.251e-90
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0 
Query:    1 MPFVSLSFTRTYPPIAGKGDFGNEKLEAENCADRRSSYNAEERRSTEADFEEDVTGQDYRDDASLPPTQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIATEDTDQENE 134
            MPFVSLSFTRTYPPIAGKGDFGNEKLE ENCADRRSSYNAEERRSTEADFEEDVTGQDYRDDASLPP QPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIATEDTDQENE
Sbjct:   53 MPFVSLSFTRTYPPIAGKGDFGNEKLEGENCADRRSSYNAEERRSTEADFEEDVTGQDYRDDASLPPMQPSSPTPDRARIAVMTDWDLHVLYDEAYRTPTLWLRVTRADGAPFIRDELARFCGIATEDTDQENE 186
The following BLAST results are available for this feature:
BLAST of EWM21439.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101669|gb|EWM21439.1|1.584e-147100.00hypothetical protein Naga_100019g10 [Nannochlorops... [more]
gi|553177311|ref|XP_005852454.1|5.251e-9098.51hypothetical protein NGA_0728300 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9258rna9258Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications