rna9250, rna9250 (mRNA) Nannochloropsis gaditana

Overview
Namerna9250
Unique Namerna9250
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3956
Alignment locationKK037252.1:203050..204900 -

Link to JBrowse

Properties
Property NameValue
ProductCytochrome b561/ferric reductase transmembrane
Orig transcript idgnl|cribi|Naga_100019g20.501.mrna
Orig protein idgnl|cribi|Naga_100019g20.501
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:203050..204900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g20gene8972Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9250rna9250-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21479.1cds9220Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9250 ID=rna9250|Name=rna9250|organism=Nannochloropsis gaditana|type=mRNA|length=3956bp
AAGTCTGGGACAACACCTTTTGAGTAAAACTGTGCGTTGCAAGTCTGCTG
CAGATATCACTTCATTTAAATTAGACTGTTGATGATATGAGCTGTGCATG
AGATTTGGTGGATCTGTCTTTGCTGAAAGCCAGTGCCTTTTTTTCGGTCT
AGCCCTCAGGCTTTGCCCCTGCTGGTATCTCGGGACAATATTCACTTATA
TGCCGCCCGGCCAGTCCTATTGGCAGGGCAATCTCACAACTCTCTCCTTT
CAATCGCGCCATGTGAGAAAGACCACCAGGAAAACCACAGTTATAACTTT
CCGTCAGTAGGTACTGGTCGTGTAGCGGAGTGGAACGTTTGTCATGGCCT
TTTTTCCCGCGTGTAAAAATGTCCTGTCAAGAAGATGATCCGGGTGAAGG
AGACGGGACTTGACGTATGCCTTTTCGTGAATGCTGGCACTTCTTCACGC
GCGGTACTACTCCATTTCATATGTCCTTAGATGAGGCATGAAACTTCAAC
TGTGTCTCACCAGGCGACCAAATTCGCGGGTGGCTGTCATATTCACTGTT
GTCTCACTCAACATATTTATCTCCTTCAGCACCTCCGTGTCACAGGCGCA
GTGCAGGCGCATGGCAACCGAGGCCAACGGTGGACCAGTGGATCACCACC
GACGGCGGGACGATGACACAGAGCAACAAATGCACCAGCAGAGCAACGAG
CAGGCCCCTGGAGCCCATCAGTTCTCAGAAGTCTCGGCAGCCGGCCGGGC
TGAGGCTTTCCCTTCCATGCAAGAGGAATTGGTGGAAGGTCGTCCGCTCA
GCATGAAACGAGTGCGATCAAGTCAGAGCTGCACATTGGAAGGGCTTTTC
TTGGCCCAGGCACCGCCTCCTGATTGCCCACCGTACTTGGACGGCAGGCA
GCTGCCTCTGTGGGTAGGCCGGAGCCCCCTGGAGCTCACCCCCGAGAAAG
CAGATGAGCTGCACAACATTCAATGGCGGGCCTGGAAGGAGGAGCTGTGT
AGCGAGTCCCGCGAGCAAAATGTGGTCGGCATGGAGAGTAGCCTCGGCCG
TGAGAAGGGCGGAGCCCACGGCGCAGCAGGGAAGGACTACGCGCGGATCC
TGGAGGCCGCCGGCTCGATCTTCAACTCTGCCTTCCTGAAGCTCAATCCC
CACAACTTCTCCATCACGGTAGGGATCACCGTGGACGCGATGTACCATAC
CAAGGCCCCGCTGCTGGCCTGTGCCAATACCTTCCTCTACGGCCTCAGCC
TCCTGGCCGACAACCCCTCCAAACAGACGATCCCCATCCAATTCTGTCCC
GCCGCCCCCCTCTTCATGGAGGTGTGGGCCCAAGAGACCTTCGGGACTGG
GGGCGGAGGGGAGGCCGTGGAGTCCCTCTTCCAGTTCTGCGGGGTCTACC
CCCACACGGGCCTGCCGGAGGTGCTGAGCCGGCAGGTGGAGCGTCGCGTC
GGGGAGCTGATGGTGGGGACGAGGTACAAGGAAGCGGTGACCTTAATCTC
GCGGTTGCTGGAGGCGCCCTGGGCGCAAGGGCACAAGATATGGGAGGAAG
ATGTCTACTGGAAACTACGCCTGCTCTCCTACACGTGCAAGCGGCGGGCC
CGGCACCTCGCCTCGGGGAGCCCCCGCTTCTCGTCCGCTTCCTCCTCCTC
CCCCAAGCGCGGGCCGGCAGCCACCTCGAAGGGCACAACCGGCGGTCGAG
CGAGGCAAAACGAGACGACACCGACGGTGGTAAGGGTGGTCGTGCTCGTC
TTCCCCTCCTCCTCCGGCCGCCTCCCCCGCGAGCTCGAGGAGGGGGAGGC
TTCGGGCACCTACGAGGCGGGCTGTTCCTTCGAGCCTGAGGAGCTGGAGG
CGTCCTTGACGGCGATGGAGGCGGCCTTTGAAGAGTTCTCCGAGTCCTTC
CTGGCCCTGTCTAAGGAGACGGTGAAGTGGGAGCTAGTCCTGGACCGGGC
ACAGTGCGTGCTGAGGGGGGCCTGTATGCCCGCCCGCCGCTACCACCGCG
AGGTGGAGGCCTCCACGAACCCGAACCGGCTCGTGGCTCAGGCAGATTTC
GCAGCCTGCCCCAACTTCCGCAAACACTTGGCCGTGGCAAGCGAAACGGA
CGAAAGAGTGCGGGAAGCTCAAGCCGTCCTGGTGGTGTGGCCCGGATTGA
AGGCGCCGCCGGCCGCCTACATGCTGACCTGCGGGGGAATCACGGCCTCG
GGGGGAGACGCGGCCGGGGGCCGGGCGGTCTTCATGTCGGACGGGCCCAT
GCTAAAGGGGCGGCCGGTCTGGTCGCCCATGTGGTTCTGGCACGAGGTTT
TTCACATCATGGAGCACATATTCCCCGAGGCTCCCTTCGCGGAAGCCTCC
GCCTCCATCGGCCACCCCTGCTTCCTCCGAGACCAGTGGCCAGATCACTA
TGACGGCCCGGGCTATGAATGGGACTACTACTACCACAGCTATCGCCAGC
ACATTTTGCACGGGAGCGCCCAACCCCCCCTTGCGGCCCGGCTGGCCAAC
CTGTCCCACCTGCCCCGCACCCGCTGCTTCGACATCTCCCGGCGGGACAC
GGCCACGATCATCGCGCGGCTTGCCCACCCGGGGGATCGGATCATTTTGC
GGGGGGGTACGTGCGAGATGAGCGCGAGCAGCGGGGCTTTGGCCTTCAAG
CCGGGCGCCGTGCTCCCAGGACTCACCTACGTGAGCGCAATCAACGAGGG
ACGGGCGGTCGCGCCGGGGCGGGAAGAGGCCAAGATGGCGAGTAACGAGG
AGGAGATCAAGAAGGAGGAGGAGGAGGAGCGGGCCTTCATGGCCTTCTGG
GTGAGCGAGCCTCCCTGTTTCGTCGTCACAATGGTCCAAGGGGGGGACAG
GGCGGCGCACGAGGCGCTGCTCGATAAGTTATTGGCGGACAAACCCAGCA
GCAAGAGCTACTCCCCTCGACAGGCGAGGCAGGGGCTCGACGGTTCCCCC
CTCGCCTCCTCGCCCACGGCGAAGGAGACCCCGTGCATGGGCCCGGGGGG
CGGCTTTTCTGGCCCTGGTCGAGGGGCCTCGGAGCACGCTCTCCACCACT
CCCCTGGTCGCATATGCGCAGCAGAAGCTGCAAGCGTGCACGGAGCAAGG
CATCTGCACCTTTCGGGCCACGGGTACCAGCTGGATGCGGCAGGCGTACA
TGGTGTGCCGGACCTGTGAGAAGTACAGCGTGCTCCAGGGCAATGTAGGT
TGTTGCATGCCCTGCTCCCAGATCTGCCATAAGGACCACGACCTGGTGCA
GAAGGAGGAGGGACCCTTCTACTGCGACTGTGCAATCGGCGGCTTCTCGA
ATATGAAGTGCCACTGTGTTGGGCTGGAGCACGAGACGATGCGGCACGGG
GGGGGGCGCGGGCATGTGGGAGGCGTCTTTCCGATGGATACGAGCACGGA
AATTCCGGGCGAAGACGGACGAGTTTATCCAGGACATCATGACAACAGCA
AGCAGGGAGAAGAACTTCGATGTCTCAACGGTTTGCATGCATGAGGGGGG
CGGGCGCAGGAAAATATCGACACACAAGGACCACTCTCTCTGGTTTCTTG
AAGAGGACGGTAGGACATGTGTTTGAGCTACAATTTGTGCAAAGCATCAG
AAAAACTTATCCCCGGTGTTCAAAGAGGTTATACCTGAAATGGGATGCGT
GTGAGTGGTGGGGCCCAGTATTGGGGGCACGCGGGAGTTGTTTGGGCCCC
CGCATGGGCCATGTCGGGGGGTGAGCGTTCCTGTAGGATGATTTTTAATC
GCTTCTTTTGTAGACGTAGAAGGACGCGCTGGAATTTTACTCATGTTCCA
AATCGATTTGTGCTGCCTGCTCGCCAGCCAGCATTGCAAAATAAAAAAAA
ATGAACCAAACGTCGTATATTGACCTCAACCCTTGCCCGCCACGGTGCCG
AGGAGCAGCTAATGACCGCCAGGGCCACTTTCGCAAGACAAACGGTGTTA
AAAAAC
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protein sequence of rna9250

>rna9250-protein ID=rna9250-protein|Name=rna9250|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MGEAAVGAHGIIMIVAFLFMTQLAEAIAWWASNKTNMRTNYFKVIEHGSR
LWNAHRGLNTLAFILGLVGMIIILSAEEFKEAMGSKERHVIYGFSMIVAL
FVHILFRVAYPDDKTKWVHRWFGRAINLWAFFVTFTGYELANYGSNEGTD
AGGEDFDNIVIIFCFWVILKFGIWVFYLILRRRGKAQKYDSVGAAEGIQL
PTTNAIEVGSPPASL
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mRNA from alignment at KK037252.1:203050..204900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9250 ID=rna9250|Name=rna9250|organism=Nannochloropsis gaditana|type=mRNA|length=1851bp|location=Sequence derived from alignment at KK037252.1:203050..204900- (Nannochloropsis gaditana)
ATTGTGCAAATGTGCAAGTTACATAAAAAAATAAGTCTTTGGTTCGAATG CAACCATGAGTCAATTGTAGGTGCTTTTGTATGATTTCTTGAGCACACTA ACAGAACACGCATGCCATATCTCGCACAGACCACGAAGACAAAGAAATCT TGTGAGGATGGGAGAAGCTGCTGTTGGTGCACACGGTATCATTATGATCG TCGCGTTCCTCTTCATGACACAACTAGCTGAGGCGATAGCATGGTGGGCA TCCAACAAGGTGGGTCGAGAGTTCCGTGGTGCAGCAGAAAGCGAAGCGGG TATGGGGGGGAAGTGGCGGAATAAACATTTAGACATGACTAGGTTGCGAA GGAAGGATAAAGTGAAGATAGGCTTTGTTCAGCACAGGCTTCGAGCCAAG GCGACCATGGGCTCGTTCTATCCCGCGGTCTCCTAGTACCAGGCATTTCC TCCTTCTGCCACCTGTCGGTCTACGTGCTCGTGCTCTTATCCCTCCTACT CTCATTGTGATTTTTTTGCTTTTAACACTCTCTGTCAGACAAATATGCGG ACCAACTACTTTAAAGTCATCGAGCATGGATCCAGACTTTGGAACGCCCA CAGAGGTCTGAACACGCTGGCCTTCATCCTAGGCCTTGTTGGAATGATCA TAATTTTGAGCGCCGAAGAGTTCAAAGAGGCGATGGGCTCCAAGGAGAGG CACGTCATTTACGGATTCTCGATGATAGTTGCCCTGTTCGTGCACATCCT CTTTCGAGTGGCGTATCCGGATGTAAGTTTCAAGCCCACGAGGAATCATC GAATGTCTTTCGTCCCATTCATCCACTTTTTATCAACCGACATGAAAATT TATTCCCTTTTCGGCTGCAGGACAAAACAAAGTGGGTACACCGGTGGTTC GGGCGTGCTATCAACCTGTGGGCGTTCTTCGTGACCTTTACCGGGTACGA GCTCGCCAATTACGGTTCAAACGAAGGAACCGATGCTGGAGGAGAAGATT TTGACAACATTGTTATCATTTTTTGCTTCTGGGTCATCTTGAAGTTCGGG TATGTGCGAAAATCTTACATTTTAACTTTCCTTGTTCTCTACATTTTTTT AAAAAAAACACAATAGTTTCTTGAGCCACGATTTGATTGGATCTTGAAAT CCTTTCTCCACTTGTGCCCTTTCATATGTCTTGCTTTTTGCACGACGAAA AAGATATCTTCCCAACACTGCTCACATGTCCATTTCAAACAGCATATGGG TCTTCTACCTGATTCTTCGTAGGCGCGGCAAGGTAATTACACTGGCAAGG ATAATATTATCTTGAAGAAAAGCTGAACCATACAATTTATCCACGTGTTG TGAGCTCACTCATTACTCTTCCCCCTTTCTTCCAATCTCAACCTTCCTTT CTGCCGCACGTTACAGGCACAAAAATACGACAGCGTTGGCGCGGCTGAAG GAATTCAACTTCCTACTACCAATGCGATTGAGGTTGGCTCTCCACCGGCT TCTCTGTAACAGACAAGCTGCCATCCACTTTCGTTTTCTGTGCGCACAAG TGCCCTTGTTTGGGATGAAAAGCAACCCGAAAGCATTTGATATGGCTTTA AGAAGTCTGTTTTTATGTTGACCTGGAAAGGACATGAAGAAAAGAGCAAG ATCGCGTGCGTTCATTGCTTTTTGAACACATTTGAAGTTATAAATATGGA ACAATTAAGTAATTCTACCCTCACCGATGTGTGGGGGCTGGAAAAAAACG GCGACAGGATGCTGCTACCAACGGAAAGCGCCGTCGTCGGATCGAACACT GACTTTTCGAGGGGGAAAATAAAGCAACGTAGAGTACGAAACTTCAAGCC T
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Coding sequence (CDS) from alignment at KK037252.1:203050..204900-

>rna9250 ID=rna9250|Name=rna9250|organism=Nannochloropsis gaditana|type=CDS|length=3240bp|location=Sequence derived from alignment at KK037252.1:203050..204900- (Nannochloropsis gaditana)
GCACAAAAATACGACAGCGTTGGCGCGGCTGAAGGAATTCAACTTCCTAC
TACCAATGCGATTGAGGTTGGCTCTCCACCGGCTTCTCTGTAACATATGG
GTCTTCTACCTGATTCTTCGTAGGCGCGGCAAGGACAAAACAAAGTGGGT
ACACCGGTGGTTCGGGCGTGCTATCAACCTGTGGGCGTTCTTCGTGACCT
TTACCGGGTACGAGCTCGCCAATTACGGTTCAAACGAAGGAACCGATGCT
GGAGGAGAAGATTTTGACAACATTGTTATCATTTTTTGCTTCTGGGTCAT
CTTGAAGTTCGGACAAATATGCGGACCAACTACTTTAAAGTCATCGAGCA
TGGATCCAGACTTTGGAACGCCCACAGAGGTCTGAACACGCTGGCCTTCA
TCCTAGGCCTTGTTGGAATGATCATAATTTTGAGCGCCGAAGAGTTCAAA
GAGGCGATGGGCTCCAAGGAGAGGCACGTCATTTACGGATTCTCGATGAT
AGTTGCCCTGTTCGTGCACATCCTCTTTCGAGTGGCGTATCCGGATATGG
GAGAAGCTGCTGTTGGTGCACACGGTATCATTATGATCGTCGCGTTCCTC
TTCATGACACAACTAGCTGAGGCGATAGCATGGTGGGCATCCAACAAGGC
ACAAAAATACGACAGCGTTGGCGCGGCTGAAGGAATTCAACTTCCTACTA
CCAATGCGATTGAGGTTGGCTCTCCACCGGCTTCTCTGTAACATATGGGT
CTTCTACCTGATTCTTCGTAGGCGCGGCAAGGACAAAACAAAGTGGGTAC
ACCGGTGGTTCGGGCGTGCTATCAACCTGTGGGCGTTCTTCGTGACCTTT
ACCGGGTACGAGCTCGCCAATTACGGTTCAAACGAAGGAACCGATGCTGG
AGGAGAAGATTTTGACAACATTGTTATCATTTTTTGCTTCTGGGTCATCT
TGAAGTTCGGACAAATATGCGGACCAACTACTTTAAAGTCATCGAGCATG
GATCCAGACTTTGGAACGCCCACAGAGGTCTGAACACGCTGGCCTTCATC
CTAGGCCTTGTTGGAATGATCATAATTTTGAGCGCCGAAGAGTTCAAAGA
GGCGATGGGCTCCAAGGAGAGGCACGTCATTTACGGATTCTCGATGATAG
TTGCCCTGTTCGTGCACATCCTCTTTCGAGTGGCGTATCCGGATATGGGA
GAAGCTGCTGTTGGTGCACACGGTATCATTATGATCGTCGCGTTCCTCTT
CATGACACAACTAGCTGAGGCGATAGCATGGTGGGCATCCAACAAGGCAC
AAAAATACGACAGCGTTGGCGCGGCTGAAGGAATTCAACTTCCTACTACC
AATGCGATTGAGGTTGGCTCTCCACCGGCTTCTCTGTAACATATGGGTCT
TCTACCTGATTCTTCGTAGGCGCGGCAAGGACAAAACAAAGTGGGTACAC
CGGTGGTTCGGGCGTGCTATCAACCTGTGGGCGTTCTTCGTGACCTTTAC
CGGGTACGAGCTCGCCAATTACGGTTCAAACGAAGGAACCGATGCTGGAG
GAGAAGATTTTGACAACATTGTTATCATTTTTTGCTTCTGGGTCATCTTG
AAGTTCGGACAAATATGCGGACCAACTACTTTAAAGTCATCGAGCATGGA
TCCAGACTTTGGAACGCCCACAGAGGTCTGAACACGCTGGCCTTCATCCT
AGGCCTTGTTGGAATGATCATAATTTTGAGCGCCGAAGAGTTCAAAGAGG
CGATGGGCTCCAAGGAGAGGCACGTCATTTACGGATTCTCGATGATAGTT
GCCCTGTTCGTGCACATCCTCTTTCGAGTGGCGTATCCGGATATGGGAGA
AGCTGCTGTTGGTGCACACGGTATCATTATGATCGTCGCGTTCCTCTTCA
TGACACAACTAGCTGAGGCGATAGCATGGTGGGCATCCAACAAGGCACAA
AAATACGACAGCGTTGGCGCGGCTGAAGGAATTCAACTTCCTACTACCAA
TGCGATTGAGGTTGGCTCTCCACCGGCTTCTCTGTAACATATGGGTCTTC
TACCTGATTCTTCGTAGGCGCGGCAAGGACAAAACAAAGTGGGTACACCG
GTGGTTCGGGCGTGCTATCAACCTGTGGGCGTTCTTCGTGACCTTTACCG
GGTACGAGCTCGCCAATTACGGTTCAAACGAAGGAACCGATGCTGGAGGA
GAAGATTTTGACAACATTGTTATCATTTTTTGCTTCTGGGTCATCTTGAA
GTTCGGACAAATATGCGGACCAACTACTTTAAAGTCATCGAGCATGGATC
CAGACTTTGGAACGCCCACAGAGGTCTGAACACGCTGGCCTTCATCCTAG
GCCTTGTTGGAATGATCATAATTTTGAGCGCCGAAGAGTTCAAAGAGGCG
ATGGGCTCCAAGGAGAGGCACGTCATTTACGGATTCTCGATGATAGTTGC
CCTGTTCGTGCACATCCTCTTTCGAGTGGCGTATCCGGATATGGGAGAAG
CTGCTGTTGGTGCACACGGTATCATTATGATCGTCGCGTTCCTCTTCATG
ACACAACTAGCTGAGGCGATAGCATGGTGGGCATCCAACAAGGCACAAAA
ATACGACAGCGTTGGCGCGGCTGAAGGAATTCAACTTCCTACTACCAATG
CGATTGAGGTTGGCTCTCCACCGGCTTCTCTGTAACATATGGGTCTTCTA
CCTGATTCTTCGTAGGCGCGGCAAGGACAAAACAAAGTGGGTACACCGGT
GGTTCGGGCGTGCTATCAACCTGTGGGCGTTCTTCGTGACCTTTACCGGG
TACGAGCTCGCCAATTACGGTTCAAACGAAGGAACCGATGCTGGAGGAGA
AGATTTTGACAACATTGTTATCATTTTTTGCTTCTGGGTCATCTTGAAGT
TCGGACAAATATGCGGACCAACTACTTTAAAGTCATCGAGCATGGATCCA
GACTTTGGAACGCCCACAGAGGTCTGAACACGCTGGCCTTCATCCTAGGC
CTTGTTGGAATGATCATAATTTTGAGCGCCGAAGAGTTCAAAGAGGCGAT
GGGCTCCAAGGAGAGGCACGTCATTTACGGATTCTCGATGATAGTTGCCC
TGTTCGTGCACATCCTCTTTCGAGTGGCGTATCCGGATATGGGAGAAGCT
GCTGTTGGTGCACACGGTATCATTATGATCGTCGCGTTCCTCTTCATGAC
ACAACTAGCTGAGGCGATAGCATGGTGGGCATCCAACAAG
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Synonyms
Publications