EWM21479.1, cds9220 (CDS) Nannochloropsis gaditana

Overview
NameEWM21479.1
Unique Namecds9220
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:204642..204743 -
Alignment locationKK037252.1:204129..204362 -
Alignment locationKK037252.1:203852..204030 -
Alignment locationKK037252.1:203619..203658 -
Alignment locationKK037252.1:203392..203484 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21479.1
ProductCytochrome b561/ferric reductase transmembrane
Orig transcript idgnl|cribi|Naga_100019g20.501.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:204642..204743 -
KK037252.1supercontigKK037252.1:204129..204362 -
KK037252.1supercontigKK037252.1:203852..204030 -
KK037252.1supercontigKK037252.1:203619..203658 -
KK037252.1supercontigKK037252.1:203392..203484 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006593Cyt_b561/ferric_Rdtase_TM
Homology
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BLAST of EWM21479.1 vs. NCBI_GenBank
Match: gi|585101709|gb|EWM21479.1| (Cytochrome b561/ferric reductase transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 439.113 bits (1128), Expect = 7.664e-156
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 
Query:    1 MGEAAVGAHGIIMIVAFLFMTQLAEAIAWWASNKTNMRTNYFKVIEHGSRLWNAHRGLNTLAFILGLVGMIIILSAEEFKEAMGSKERHVIYGFSMIVALFVHILFRVAYPDDKTKWVHRWFGRAINLWAFFVTFTGYELANYGSNEGTDAGGEDFDNIVIIFCFWVILKFGIWVFYLILRRRGKAQKYDSVGAAEGIQLPTTNAIEVGSPPASL 215
            MGEAAVGAHGIIMIVAFLFMTQLAEAIAWWASNKTNMRTNYFKVIEHGSRLWNAHRGLNTLAFILGLVGMIIILSAEEFKEAMGSKERHVIYGFSMIVALFVHILFRVAYPDDKTKWVHRWFGRAINLWAFFVTFTGYELANYGSNEGTDAGGEDFDNIVIIFCFWVILKFGIWVFYLILRRRGKAQKYDSVGAAEGIQLPTTNAIEVGSPPASL
Sbjct:    1 MGEAAVGAHGIIMIVAFLFMTQLAEAIAWWASNKTNMRTNYFKVIEHGSRLWNAHRGLNTLAFILGLVGMIIILSAEEFKEAMGSKERHVIYGFSMIVALFVHILFRVAYPDDKTKWVHRWFGRAINLWAFFVTFTGYELANYGSNEGTDAGGEDFDNIVIIFCFWVILKFGIWVFYLILRRRGKAQKYDSVGAAEGIQLPTTNAIEVGSPPASL 215
The following BLAST results are available for this feature:
BLAST of EWM21479.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101709|gb|EWM21479.1|7.664e-156100.00Cytochrome b561/ferric reductase transmembrane [Na... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9250rna9250Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications