rna9247, rna9247 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9247
Unique Name	rna9247
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2785
Alignment location	KK037252.1:192238..193488 -

Link to JBrowse

Properties


Property Name	Value
Product	Mitochondrial glycoprotein
Orig transcript id	gnl\|cribi\|Naga_100019g24.533.mrna
Orig protein id	gnl\|cribi\|Naga_100019g24.533
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:192238..193488 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g24	gene8969	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9247	rna9247-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21511.1	cds9217	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:192238..193488-
coding sequence from alignment at KK037252.1:192238..193488-

mRNA sequence

>rna9247 ID=rna9247|Name=rna9247|organism=Nannochloropsis gaditana|type=mRNA|length=2785bp
GACTCGATCAGCGTTACGCTAATGGGCCGGCAACATGTCATGGTCTTTCG
ACTGCCCCATCTCTATGTCACCTCCAGAGGGGGCCGTTGATTGCAAAAAA
AAAAGAGCTCAATTTGAGACAGGTGTAAGCTTTGCAATCGACTCCCACTT
GGCAGCGACCTAATAAGGGCGGGGAGAGTGGTGATGTCTAAATTCACGTT
TTGCAGGCATGCCCATTTCGGTGCCCCTCGATGACGCTACCCCCGCCGCG
GCGGCCCCCTCCACTTGCGCTCAACTCCCTTCAGGTCACAGAGTTTCACA
AAAAGGGGCTCACAACGACAGAAACACGATGGATCTCGCTGTGGGCCAAC
AGCCTAGCAACAGTTTGGCGTACACGAATCGGGTATATGTAAGCCACCCC
GATTGGGAGTTCCTTCTTTCTCGCGTAGGCAACCCTGAGGCCAGCAAGAT
TGAGGACGACGCGCTGCTCATAACAGTAAATGGACTGGTTTTTGCGGTCA
GTCCAAATAAGGGCATCGAGACTGGGAACATAGGCCTGAACTCGTTGCAA
CGACGTTTCGGTGTTTTTACGCTGACCCAGCGCGTCAAAGTGGACATTTT
CGAGAGTAATGCTGGTCTAGCACTTACCTCTGTAATAGTCCGTGTGGACC
TCTTGGCAAAAGGTAAAGTCAAGTCGCCCTTGCTGCTAGCCACGGAGGAA
ATGGCCGGGGCCTTCAAGGCCGCCTTTCTTTCGCAGGTCTTACAGACGCA
GCAGCCCGTGGCATGGGATTTTCGTGGCACGAAGCTGGAATTGATCATAG
AGAGCTTTCAAAATCTGATACCGGGTGGAAACTGCCCCAACGCTGGGCAG
CTCTTGCAGCCCACGGATGTCGTCTTCACGAAGGAGAAAGGCGCCATGGT
GGCCCTGTCCGGCGCCAATTCGGGCGCCCCCCGCGACAACATCATCAACC
CAGATTTTGATTTTGGGAAGCTAGGTATCGGAGGTCTTGGGAACGAGTTC
AATCAAATTTTTCGTCGGGCCTTCGCGTCGCGCGTCTTTCCCGGGCACAT
CGTCAAGCAACTCGGGATCAACCACGTGCGGGGCATGTTGCTTTGGGGCC
CACCAGGCTGCGGCAAGACCCTCATCGCGCGTACCATCGGAAAGATTCTG
AATGCGCGCGAGCCCAAGATCGTGAATGGGCCCGAGGTCCTTGACAAATA
CGTGGGCGGGTCGGAGGAGCGGATCCGGGAGCTTTTCAAGGACGCGGAGA
AGGAGCAGCAGGAAATGGGGGACGGTAGTGGCTTGCACGTGATTATTTTC
GATGAGATTGACGCCATTTGCAAGTCTCGTGGCTCCAGCCGCGACAGCAC
TGGCGTTTCGGACTCGATTGTGAACCAGTTGCTCTCTAAGATCGACGGCG
TGAATTCTCTGAACAACATCCTGGTCATAGGGATGACGAACAGAAAGGAC
ATGATCGACGAGGCAGTTTTGCGTCCCGGTCGGCTGGAGGTGCACGTGGA
GATCGGGCTTCCTGACGAGGAGGGCCGCCTGCAGATCATATCTATCCACA
CAAAAAGCATGCGGGAGCATAAACGCATCGCGCCCGAGGCCGTGGGAAAA
CTTGCGGAGCTCGCACGCGCCACCAAGAACTACTCCGGCGCCGAAATTGA
AGGCTTAGTCAAGTCGGCGGCCTCATTCGCCTTCCAGCGCAACGTGAACG
TGAAGGACCTGTCTCAGCTTAAGGAGGAGGAGCTGATAGTGGAGTGGGCG
GACTTTCAGCGGGCCCTCTTGGAGGTCCCTCCCCGTTTAGGGGCCAACTC
GGAGGAGCTTGAGGTTTTGTTTCGGAATGGCATCGTCCCGTACGGCTCCT
CTTTCGACGCGATCATGATGACCCTGCGCCGCTTCGTCCAGCAAGTCCGG
GTCTCGGACCGGACGCCCCTCCTGTCTGTCTTGCTTGAGGGCGCTCCCAG
CACGGGGAAGACGGCGATTGCCGCCTCTTTGGGCGTGCAGAGCGAGTTTC
CCTTCGTGAGGGTCGTATCGGCGGATGCCATGGTCGGCTTCTCGGAGACC
GCCAAGTGCTCGGCCATCCTGAAGGCTTTCCAGGACAGCTCCCGCTCGCC
CCTCTCCGTGATCGTCCTCGACGATCTGGAGCGGCTCATCGACTACTCCC
CCATCGGCCCACGGTTCTCTAACACGGTGGTGCAGACCTTGCTGGTGCTT
CTGAAGAAGCCGCCCACCTCCCCGGACAAGCGCTTGCTCGTGATCGGCAC
GACCTCGGTGGCGGCCCATCTCGAGGACCTGCAGCTCGTCCAGGGCTTCA
ACGTGATGCTGACCGTGCCCCAGCTGACGGGCCCGGAGGAGATCAAGACG
GTCCTACGGGAGGTGGTCACCTCCCTGTCGCAGAAGGAGATGGATGATAT
CACGTCAGCGATCAGCCAGCCAATAGGGATCAAGCAGCTCTTGATGGTGA
CGGAGATGGCGAGGCAAGGAGAGGAGACCGTCTCGACCGATAGATTCTTG
GAGTGCCTGCACATTTGTGGGTTCTGAGATGGGAAGGAGAAGAGGAATTA
TCCAAGTGTGGAGAGGACGGGTATTGAGTTGCAGGCGCGCCGAGCGATGA
TGGTGGAGATGATGGGAGTGGAGGGCTATGTAAAAAAAAAGTCAAAAAGC
ACCTTAAGAGCGCGACGGGAGAGACCGACGCTTTATCCTCCAAGTTTAGG
ATCGCGAAATTGGCTTTGTGAAATTTGGCCTTTTTGCATTTTTTGTACGG
AATTGATTTCAAAGCAAAAGAAGTTAGATTTGATA

protein sequence of rna9247

>rna9247-protein ID=rna9247-protein|Name=rna9247|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MLRTSTLALLRRAASATPQQQHHMATSLVFRAGTNATMGFVRHPQAMSPI
LIVKSRRFGTHGDGDVMPSAMKGGSGGGHGTSAALEDLLARELQEEKDLM
ESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQD
TTEDELDPQELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEK
VALDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSY
FAFEKEKEHYLTFLERATEFVGAK

mRNA from alignment at KK037252.1:192238..193488-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9247 ID=rna9247|Name=rna9247|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp|location=Sequence derived from alignment at KK037252.1:192238..193488- (Nannochloropsis gaditana)
GTGCAAAATCCTCTTCGCAAACGTATGCCACAACCATACGCAACTTTTTG
TCCTCGAAATAGAACACATTTACGAATCACCCGCAATAAATATGCAAGCA
GAAACAGCACAGGTATCACATCATGCTTCGCACGTCGACCTTGGCCTTGT
TGCGCCGTGCCGCATCGGCCACTCCGCAACAGCAACATCACATGGCAACT
AGCCTTGTGTTCCGCGCTGGGACAAATGCTACTATGGGCTTCGTCCGCCA
TCCTCAGGCTATGTCACCCATATTGATAGTAAAGAGTCGCAGGTTTGGTA
CGCATGGAGACGGTGACGTGATGCCGAGCGCCATGAAAGGAGGTTCGGGG
GGAGGACATGGGACGAGCGCTGCCTTGGAAGATTTGCTAGCTCGTGAACT
GCAGGAAGAAAAAGACCTCATGGAGAGCGAAGAACGGGCACCGGAACTGG
AGGACGTGTCCGAAAAGATTCATAAGCGCTTTCACATCAAAGAGTCTCCA
GGCAGCAGGTGCGTTCACATTTGGAATCTTGAGATATACTGGGGATTCTC
AATTGGAATAGAAAGGAGTGTAGGAAATTTTATTCACTCTCTCGTCTAAT
ATTTTTCCATGAAGTATTATCAAAATGCATACAAAGCACAATACGGAAAA
AATCATGGTGCAGTACGATGTGCAAGACACGACGGAGGATGAACTCGACC
CTCAAGAGCTCGAGGACGAGAAGGCGGAGGATTACACTGTGGGAATCCGG
GGGGTGGTGACAATTGCGAAAGCCCACCACAAGTTGATGTTCTCTGTAGT
GTTCACCAACACGGTGTGGGTGGAGAAGGTCGCGCTTGACTCGGACGGCC
GGGAGTGGAACGACGAGACCTTGTACTGGTCGGATTTCTCCGAGTACCCG
GAGGATGTCCAGGAGGCCTTCACGCGGCATCTGGCGGCGCGGAATATTGA
CGACGAGCTGGCTGTTTTCGTCTCCTACTTCGCTTTCGAGAAGGAGAAGG
AGCATTACCTGACGTTCCTCGAGCGGGCCACAGAGTTTGTCGGAGCCAAG
TGATGGACCTCGCCATATCTGTCTTCCTCTTAGCGCGTGCCTGGTTATCT
CACTGGGCCCTTCGAAATAGTTGTTTGTTTTGCTTACGGACAATAAGTTT
GGAGCAGCCCGGTGGTAGAGCGCGAGTCTTAAGGAAAAGAAACACGGATG
CCAGTTACATACCATCTTGCAACGACTCTTTATCAAATCTAACTTCTTTT
G

Coding sequence (CDS) from alignment at KK037252.1:192238..193488-

>rna9247 ID=rna9247|Name=rna9247|organism=Nannochloropsis gaditana|type=CDS|length=1650bp|location=Sequence derived from alignment at KK037252.1:192238..193488- (Nannochloropsis gaditana)
TATTATCAAAATGCATACAAAGCACAATACGGAAAAAATCATGGTGCAGT
ACGATGTGCAAGACACGACGGAGGATGAACTCGACCCTCAAGAGCTCGAG
GACGAGAAGGCGGAGGATTACACTGTGGGAATCCGGGGGGTGGTGACAAT
TGCGAAAGCCCACCACAAGTTGATGTTCTCTGTAGTGTTCACCAACACGG
TGTGGGTGGAGAAGGTCGCGCTTGACTCGGACGGCCGGGAGTGGAACGAC
GAGACCTTGTACTGGTCGGATTTCTCCGAGTACCCGGAGGATGTCCAGGA
GGCCTTCACGCGGCATCTGGCGGCGCGGAATATTGACGACGAGCTGGCTG
TTTTCGTCTCCTACTTCGCTTTCGAGAAGGAGAAGGAGCATTACCTGACG
TTCCTCGAGCGGGCCACAGAGTTTGTCGGAGCCAAGTGAATGCTTCGCAC
GTCGACCTTGGCCTTGTTGCGCCGTGCCGCATCGGCCACTCCGCAACAGC
AACATCACATGGCAACTAGCCTTGTGTTCCGCGCTGGGACAAATGCTACT
ATGGGCTTCGTCCGCCATCCTCAGGCTATGTCACCCATATTGATAGTAAA
GAGTCGCAGGTTTGGTACGCATGGAGACGGTGACGTGATGCCGAGCGCCA
TGAAAGGAGGTTCGGGGGGAGGACATGGGACGAGCGCTGCCTTGGAAGAT
TTGCTAGCTCGTGAACTGCAGGAAGAAAAAGACCTCATGGAGAGCGAAGA
ACGGGCACCGGAACTGGAGGACGTGTCCGAAAAGATTCATAAGCGCTTTC
ACATCAAAGAGTCTCCAGGCAGCAGTATTATCAAAATGCATACAAAGCAC
AATACGGAAAAAATCATGGTGCAGTACGATGTGCAAGACACGACGGAGGA
TGAACTCGACCCTCAAGAGCTCGAGGACGAGAAGGCGGAGGATTACACTG
TGGGAATCCGGGGGGTGGTGACAATTGCGAAAGCCCACCACAAGTTGATG
TTCTCTGTAGTGTTCACCAACACGGTGTGGGTGGAGAAGGTCGCGCTTGA
CTCGGACGGCCGGGAGTGGAACGACGAGACCTTGTACTGGTCGGATTTCT
CCGAGTACCCGGAGGATGTCCAGGAGGCCTTCACGCGGCATCTGGCGGCG
CGGAATATTGACGACGAGCTGGCTGTTTTCGTCTCCTACTTCGCTTTCGA
GAAGGAGAAGGAGCATTACCTGACGTTCCTCGAGCGGGCCACAGAGTTTG
TCGGAGCCAAGTGAATGCTTCGCACGTCGACCTTGGCCTTGTTGCGCCGT
GCCGCATCGGCCACTCCGCAACAGCAACATCACATGGCAACTAGCCTTGT
GTTCCGCGCTGGGACAAATGCTACTATGGGCTTCGTCCGCCATCCTCAGG
CTATGTCACCCATATTGATAGTAAAGAGTCGCAGGTTTGGTACGCATGGA
GACGGTGACGTGATGCCGAGCGCCATGAAAGGAGGTTCGGGGGGAGGACA
TGGGACGAGCGCTGCCTTGGAAGATTTGCTAGCTCGTGAACTGCAGGAAG
AAAAAGACCTCATGGAGAGCGAAGAACGGGCACCGGAACTGGAGGACGTG
TCCGAAAAGATTCATAAGCGCTTTCACATCAAAGAGTCTCCAGGCAGCAG

Synonyms

Publications