EWM21511.1, cds9217 (CDS) Nannochloropsis gaditana

Overview
NameEWM21511.1
Unique Namecds9217
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:192981..193366 -
Alignment locationKK037252.1:192436..192874 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21511.1
ProductMitochondrial glycoprotein
Orig transcript idgnl|cribi|Naga_100019g24.533.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:192981..193366 -
KK037252.1supercontigKK037252.1:192436..192874 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005759mitochondrial matrix
Vocabulary: INTERPRO
TermDefinition
IPR003428MAM33
Homology
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|553181777|ref|XP_005853623.1| (hypothetical protein NGA_0430001 [Nannochloropsis gaditana CCMP526] >gi|422295435|gb|EKU22734.1| hypothetical protein NGA_0430001 [Nannochloropsis gaditana CCMP526] >gi|585101741|gb|EWM21511.1| Mitochondrial glycoprotein [Nannochloropsis gaditana])

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MLRTSTLALLRRAASATPQQQHHMATSLVFRAGTNATMGFVRHPQAMSPILIVKSRRFGTHGDGDVMPSAMKGGSGGGHGTSAALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVGAK 274
            MLRTSTLALLRRAASATPQQQHHMATSLVFRAGTNATMGFVRHPQAMSPILIVKSRRFGTHGDGDVMPSAMKGGSGGGHGTSAALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVGAK
Sbjct:    1 MLRTSTLALLRRAASATPQQQHHMATSLVFRAGTNATMGFVRHPQAMSPILIVKSRRFGTHGDGDVMPSAMKGGSGGGHGTSAALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVGAK 274          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|1214703189|gb|OWZ15248.1| (hypothetical protein PHMEG_00011142 [Phytophthora megakarya])

HSP 1 Score: 99.3673 bits (246), Expect = 2.159e-21
Identity = 67/198 (33.84%), Postives = 106/198 (53.54%), Query Frame = 0
Query:   88 LLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQ-----------ELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSD-GREWNDETLYWS-DFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVG 272
            +L RE++EEK     E+   ELED+  ++ K F ++E+PG   I +      + I ++++ QDT E E + +             ED++AED   G+R    + + +  L F  V ++ + VE+V    D  ++  DETLY+  +F +   DVQ+ F  +LA R IDDELA F++ FA  KE+  YL FLE    F+ 
Sbjct:   36 ILNREIKEEKANCFEEQ---ELEDLRTQVEKVFQLQEAPGCMEILLKGSVGDDSIQIKFNAQDTMELEDEAEYDDVDEEQDEEVYEDDEAEDELPGVRFTADVTRDNKGLQFDCVASSNLTVERVRYLHDFAKDAEDETLYFGPNFIDLELDVQDKFYNYLAERKIDDELAQFITQFADLKEQREYLAFLEDTETFIN 230          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|698778249|ref|XP_009822168.1| (hypothetical protein H257_00931 [Aphanomyces astaci] >gi|574121829|gb|ETV87305.1| hypothetical protein H257_00931 [Aphanomyces astaci])

HSP 1 Score: 97.8265 bits (242), Expect = 5.237e-21
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 0
Query:   82 SAALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELEDEKA----------EDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVGA 273
            S+AL  LL REL EEK      E   ELE + EK+   F I+++PG+  I + +K+  E I V+++ QD  +   +  E ++ +           +D    IR    I K +H L+F  V ++ + VE V       + ND       F++  EDVQEAF  +L AR+I+D+LA F++ F+  KE++ Y+TFLE A +F  A
Sbjct:   23 SSALPSLLGRELAEEKANCFVGE---ELEALREKVLANFKIQDTPGNLDIVLLSKYKNEAIDVKFNCQDVADVAEEGGEYDEGEEDEAEDAGEFEDDVLPCIRFTARIVKDNHALVFDCVASSVLTVEGVMHTETADDLNDSDYEGPRFADLEEDVQEAFADYLNARHINDDLANFITQFSDLKEQKEYVTFLENAQKFTEA 221          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|1173954940|gb|OQS02052.1| (hypothetical protein THRCLA_05548 [Thraustotheca clavata])

HSP 1 Score: 93.2041 bits (230), Expect = 2.917e-19
Identity = 71/212 (33.49%), Postives = 113/212 (53.30%), Query Frame = 0
Query:   66 VMPSAMKGGSGGGHGTSAALEDLLARELQEEK-DLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDE-----LDPQELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVA-LDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEF 270
            +   A++        T  AL  LL+REL EEK +   S+E    LE + EK+ K F I ++PG+  I + +K+N E I V ++VQD  E E      D +   D++ ED    IR    I K +  L+F  V ++ + ++ V  L+ +  E ++   +   F +   DVQEAF  +L  R+I+DELA F+  ++  KE++ Y+TFLE   +F
Sbjct:    6 IASRALRVPKARFFSTEDALSSLLSRELAEEKANCFVSDE----LETLREKVLKTFKIHDTPGNVAITLKSKYNDELIDVNFNVQDIAETEEAYEDEDGEGEYDDEEEDVLPNIRFTARIVKNNQALIFDCVASSILTIDSVMHLEENSDEVDNNVYHGPRFMDLENDVQEAFADYLNDRHINDELANFIMEYSDLKEQKEYVTFLENVQKF 213          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|953499636|emb|CEG39062.1| (mitochondrial glyco protein [Plasmopara halstedii])

HSP 1 Score: 91.2781 bits (225), Expect = 2.023e-18
Identity = 70/206 (33.98%), Postives = 107/206 (51.94%), Query Frame = 0
Query:   83 AALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTE---------------DELDPQELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSD-GREWNDETLYWS-DFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFV 271
            ++L  LL RE++EEK     E   PELED+  K+ K F I+E+PG   + +     ++ I ++++ QDT E               +     + +DE+  D   G+R    I + +  L F  V ++ + VE++    D  +E  DET Y+  +F +   DVQ+ F  +LA RNIDD LA F++ FA  KE+  YL FLE A  FV
Sbjct:   28 SSLASLLQREIREEKGNSLEE---PELEDLRSKVEKLFKIQETPGCMDVVLQGSVGSDSIKIKFNAQDTVELDEEEDYDDEDEDHGNVEVVDDGDDEEEADELPGVRFTADIMRDNKGLQFDCVASSNLTVERLRYFKDFAKEDEDETRYFGPEFIDLELDVQDNFYSYLADRNIDDALAQFITQFADLKEQREYLAFLEDAETFV 230          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|673014632|ref|XP_008861277.1| (hypothetical protein H310_00318 [Aphanomyces invadans] >gi|574482875|gb|ETW09866.1| hypothetical protein H310_00318 [Aphanomyces invadans])

HSP 1 Score: 90.5077 bits (223), Expect = 3.334e-18
Identity = 69/201 (34.33%), Postives = 103/201 (51.24%), Query Frame = 0
Query:   82 SAALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTE---------DELDPQELEDEKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVGA 273
            S+AL  LL REL EEK      E   ELE + EK+   F I+++PG+  I +  KH  E+I ++++ QD            +  D    E E  +D    IR    I K +  L+F  V ++ + VE V       +  D       F++  EDVQEAF  +L  R+I+D+LA F++ FA  KE++ Y+TFLE   +F+ A
Sbjct:   23 SSALPSLLGRELAEEKANCFVGE---ELESLREKVLANFKIQDTPGNLDIVLLRKHKNEQIDIKFNCQDVANVAEDGGEYDEGDDEDSEEGEYDDDVLPCIRFTARIVKDNSALIFDCVASSVLTVEGVMHTETADDLKDSDYEGPRFADLEEDVQEAFANYLDERHINDDLANFITQFADLKEQKEYVTFLENTQKFIEA 220          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|695369742|ref|XP_009514132.1| (hypothetical protein PHYSODRAFT_538644 [Phytophthora sojae] >gi|348687043|gb|EGZ26857.1| hypothetical protein PHYSODRAFT_538644 [Phytophthora sojae])

HSP 1 Score: 90.1225 bits (222), Expect = 6.200e-18
Identity = 71/206 (34.47%), Postives = 107/206 (51.94%), Query Frame = 0
Query:   83 AALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELEDEKAEDYTV---------------GIRGVVTIAKAHHKLMFSVVFTNTVWVEKVALDSD-GREWNDETLYWS-DFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFV 271
            ++L  +L REL EEK     E   PE+E++  K+   F ++E+PG   I ++     + I ++++ QDT E E D +  +D   E+                  G+R    I + +  L F  V ++ V VE+V   +D  +E  DETLY+  +F +   DVQ+ F R+LA R IDDELA F++ FA  KE+  Y  FLE A  FV
Sbjct:   31 SSLASVLKRELDEEKANCFEE---PEMEELRLKVESVFKLQETPGCMDIVLNGTMGDDSIKIKFNAQDTVELEDDEEYGDDYDEEEEQQEVDEEEDEEEEDELPGVRFTADITRDNQGLQFDCVASSNVTVERVRYLADFAKEAEDETLYFGPNFIDLELDVQDHFYRYLADRKIDDELAQFITQFADLKEQREYTAFLEDAETFV 233          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|1173951417|gb|OQR99306.1| (hypothetical protein ACHHYP_07104 [Achlya hypogyna])

HSP 1 Score: 88.1965 bits (217), Expect = 2.514e-17
Identity = 66/201 (32.84%), Postives = 102/201 (50.75%), Query Frame = 0
Query:   84 ALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELEDEKAEDYTV----------GIRGVVTIAKAHHKLMFSVVFTNTVWVEKVA-LDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVGA 273
            AL  LL REL EEK      E   ELE + EK+ K F I ++PG+  + +  KH  E I + ++VQD  E E    + E+ + ED              IR    I K +  L+F  V ++ + ++ V  L+ +  E ++   +   F +   DVQEAF  +L  R+I+D+LA F+  +A  KE++ Y+ FLE   +F  A
Sbjct:   26 ALSSLLGRELAEEKANCFVGE---ELETLREKVLKNFKISDTPGNVGVTLRAKHANETIDINFNVQDVAEPEAGEYDDEEAEEEDAEYEGDEEDDVLPNIRFTARIVKNNQALIFDCVASSILTIDSVMHLEENADEVDNSVYHGPRFIDLENDVQEAFADYLNERHINDDLANFIMEYADLKEQKEYVAFLENVQKFTEA 223          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|813118033|ref|XP_012195828.1| (hypothetical protein SPRG_01872 [Saprolegnia parasitica CBS 223.65] >gi|641539248|gb|KDO33057.1| hypothetical protein SPRG_01872 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 87.4261 bits (215), Expect = 4.530e-17
Identity = 67/201 (33.33%), Postives = 105/201 (52.24%), Query Frame = 0
Query:   82 SAALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELED---------EKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVA-LDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVG 272
            S+ L  LLAREL EEK      E   ELE + EK+ K F I ++PG+  I + +K   E I + ++VQD  E E    E E+         ++ +D    IR    I K +  L+F  V ++ + ++ V  L+ +  E ++   +   F +   DVQEAF  +L  R+I+D+LA F+  +A  KE++ Y+TFLE   +F  
Sbjct:   21 SSDLSSLLARELAEEKANCFVGE---ELETLREKVLKHFKITDTPGNVGITLKSKTANEIIDINFNVQDVAEPEAGEYEDEEEEAEGDYEGDEEDDVLPSIRFTARIVKNNEALIFDCVASSILTIDSVMHLEENADEVDNSAYHGPRFIDLENDVQEAFADYLNERHINDDLANFIMEYADLKEQKEYVTFLENVQKFTA 218          
BLAST of EWM21511.1 vs. NCBI_GenBank
Match: gi|669153578|ref|XP_008612351.1| (hypothetical protein SDRG_08253 [Saprolegnia diclina VS20] >gi|669153580|ref|XP_008612352.1| hypothetical protein SDRG_08254 [Saprolegnia diclina VS20] >gi|530735797|gb|EQC34039.1| hypothetical protein SDRG_08253 [Saprolegnia diclina VS20] >gi|530735798|gb|EQC34040.1| hypothetical protein SDRG_08254 [Saprolegnia diclina VS20])

HSP 1 Score: 87.4261 bits (215), Expect = 5.073e-17
Identity = 67/201 (33.33%), Postives = 105/201 (52.24%), Query Frame = 0
Query:   82 SAALEDLLARELQEEKDLMESEERAPELEDVSEKIHKRFHIKESPGSSIIKMHTKHNTEKIMVQYDVQDTTEDELDPQELED---------EKAEDYTVGIRGVVTIAKAHHKLMFSVVFTNTVWVEKVA-LDSDGREWNDETLYWSDFSEYPEDVQEAFTRHLAARNIDDELAVFVSYFAFEKEKEHYLTFLERATEFVG 272
            S+ L  LLAREL EEK      E   ELE + EK+ K F I ++PG+  I + +K   E I + ++VQD  E E    E E+         ++ +D    IR    I K +  L+F  V ++ + ++ V  L+ +  E ++   +   F +   DVQEAF  +L  R+I+D+LA F+  +A  KE++ Y+TFLE   +F  
Sbjct:   21 SSDLSSLLARELAEEKANCFVGE---ELETLREKVLKHFKITDTPGNVGITLKSKTANEIIDINFNVQDVAEPEAGEYEDEEEEAEGDYEGDEEDDVLPSIRFTARIVKNNEALIFDCVASSILTIDSVMHLEENADEVDNSAYHGPRFIDLENDVQEAFADYLNDRHINDDLANFIMEYADLKEQKEYVTFLENVQKFTA 218          
The following BLAST results are available for this feature:
BLAST of EWM21511.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553181777|ref|XP_005853623.1|0.000e+0100.00hypothetical protein NGA_0430001 [Nannochloropsis ... [more]
gi|1214703189|gb|OWZ15248.1|2.159e-2133.84hypothetical protein PHMEG_00011142 [Phytophthora ... [more]
gi|698778249|ref|XP_009822168.1|5.237e-2134.65hypothetical protein H257_00931 [Aphanomyces astac... [more]
gi|1173954940|gb|OQS02052.1|2.917e-1933.49hypothetical protein THRCLA_05548 [Thraustotheca c... [more]
gi|953499636|emb|CEG39062.1|2.023e-1833.98mitochondrial glyco protein [Plasmopara halstedii][more]
gi|673014632|ref|XP_008861277.1|3.334e-1834.33hypothetical protein H310_00318 [Aphanomyces invad... [more]
gi|695369742|ref|XP_009514132.1|6.200e-1834.47hypothetical protein PHYSODRAFT_538644 [Phytophtho... [more]
gi|1173951417|gb|OQR99306.1|2.514e-1732.84hypothetical protein ACHHYP_07104 [Achlya hypogyna... [more]
gi|813118033|ref|XP_012195828.1|4.530e-1733.33hypothetical protein SPRG_01872 [Saprolegnia paras... [more]
gi|669153578|ref|XP_008612351.1|5.073e-1733.33hypothetical protein SDRG_08253 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9247rna9247Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications