rna9244, rna9244 (mRNA) Nannochloropsis gaditana

Overview
Namerna9244
Unique Namerna9244
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1091
Alignment locationKK037252.1:185975..187713 +

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Properties
Property NameValue
Productpak1ip1 protein
Orig transcript idgnl|cribi|Naga_100019g27.471.mrna
Orig protein idgnl|cribi|Naga_100019g27.471
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:185975..187713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g27gene8966Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9244rna9244-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21449.1cds9214Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9244 ID=rna9244|Name=rna9244|organism=Nannochloropsis gaditana|type=mRNA|length=1091bp
CGTGCCTCTGTGGCCTCATGGACGCGTCATTCTCCCTTAGCATGCTCTGT
AATATGTTTCTTTCGAATTCTGTGTGACTCTATCTTTCGTTGACACACGA
ATGGCGATGAAGATGCTCTCCTTGTGGGGCGCTACCGCTTTCGACGAGAC
GAGCGGTACCGTCATGCCCGTCTTGTTCAGTAATCCAGAAATTATACTTT
CGAGGAAATTCCAGCGGCATGATTGGAGTGGTATAGAAGTCTAAAAGAGG
TGCACGACAGCCTAACCCCCCACGCCGGAGTGCGTTGATACCCATTGCTC
TGTTTTCTCCATCTCATCTCCTCCCCTTCCTCCTCCATCAGGCATCCACT
ATGGTTGCGGAGAAAGTTTCCAAGCGCGGTGGTTACCGTGAAGCCGATCA
ACATGAAAAGGCTTATCAAGTGCAGAAAGGTGTATTTATGTTTGGAAAGT
CCTCATCCCGCAAGGAGGGGTCCAAGCGCTCAAAGCATGGTGCGCGATGG
ACCAGGGAGGTGGGCCTGGGCTTCAAGACCCCGAAGGAGGCGAAGGCCGG
GACCTACGTCGACAAGAAGTGCCCCTTTACGGGATCCGTCTCCATTCGTG
GCCGTATTCTCAAGGGCATCGTCCTTTCCACGAAAATGAACCGCACCATC
ATCATCCGACGGGACTACTTGCACTGGGTCTCCAAGTACAGCCGTTTCGA
GAAGCGCCACAAGAACTTGGCAGCGCACTGTTCGCCCGCCTTCCCGCAGG
TGAAGGAGGGCGACATTGTGACGGTCGGCCAGTGCCGCCCTCTGAGCAAG
ACAGTCCGTTTCAATGTACTTCAGCATGAACCCTCCATCAATCAGGCGTT
AAGCATCAAGAAGCAGTTCCGCGTCTTTTGAGCAGGCCAGAGCTACGGGC
GATGGAGGCGTGTCCATGCTCTGCATTGAGAGTGGGAATGGGTTACCGAC
ACCGGAAGGAGGAGGGGAAATTCAGGGTGAAAGTTGTTCAATAATGCGCC
ACCTCGATCATGCAAGGGCTCCTGAGCGCGTCGGGCAGCACTGTGGTAGC
TGAAAGAAGAAAAAGAATGCCCCACGGGTTCTGTCTCCCTG
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protein sequence of rna9244

>rna9244-protein ID=rna9244-protein|Name=rna9244|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MIRFLIQDWRKDSFLYPCEDMAVRKRLIGAYVHVPFSQIFAYTPHQGSVR
SLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTITALGF
VGSSHLLSGSEDGAVCIWRVYDWSLLHILGGHKGAITAVAIHPSGKLALS
SGRDRSLRLWDLVRGRCAYITKLEAVVETVKWSGDGSVYALQVGDRRLEV
RRASDNKPTAIATHPARVTAIAFLPAAAAAPCADEAKSLEISAAIEQQAP
MHHVVTACDDGMLRVVDGDTGSVLSCTETGPHCGRIKEAVVWGNRALPFW
QQSRELVTASSDGKILVWRVGPAGTQVEVGPGAALGAGVRITCLAAYAAG
EAVDEGRASSGTSLGKNKKKRKRVRGEETKEANMGPDRAAPRKGETARKS
KGNRHRSANRGSGMQSNGAPSRGKSRAQASSRANV
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mRNA from alignment at KK037252.1:185975..187713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9244 ID=rna9244|Name=rna9244|organism=Nannochloropsis gaditana|type=mRNA|length=1739bp|location=Sequence derived from alignment at KK037252.1:185975..187713+ (Nannochloropsis gaditana)
gTGTTCCCACAGTTCGTCGTACAGATTACCATGCCTGTTCCGCCTCTGTT
TCCCGCCGCAGCGGCTATTGGGTCTTCGCTACTACCAATTTTTCCCACAT
CTAGGTATATTTGTGTCGCAGGCACGTATGACGGCGGCATAGCAGGCTGG
GAATTGCAGCGGGAAGGGCAAAATCAGACAACAGGCCTGAAGATGGTACG
TACGTCAACCGAGCTTTACCAACAAAACGCATGATTCGATTCTTGATACA
GGATTGGCGGAAAGATTCTTTTTTGTATCCTTGTGAAGATATGGCAGTAA
GAAAGCGATTGATCGGGGCTTATGTCCACGTTCCCTTCTCGCAGATTTTT
GCCTACACCCCGCATCAAGGAAGCGTCCGATCGCTGGCTATACCACAAGG
GGGGGTCAAAGCTGGGTCTCTTTTAGTGTCAGGTGGTGTTGACGAGCATA
TCCGCATGTATGACCTACGAAAACGCGCGGAAGTCGGCGAGCTTCTACAC
CATAAGGGTACCATAACCGCCCTGGGCTTTGTGGGCTCATCCCACTTGCT
GAGCGGTAGTGAGGATGGTGCGGTCTGCATATGGCGCGTGTACGATTGGA
GCCTTCTTCATATTTTGGGTGGACACAAGGGAGCTATCACTGCCGTCGCT
ATACACCCGTCTGGGAAGCTCGCCTTGTCCTCAGGGCGCGATAGGAGTCT
GCGTCTCTGGGATCTGGTTCGTGGCCGTTGCGCCTACATCACCAAGCTCG
AAGCGGTGGTCGAGACCGTCAAATGGTCTGGCGATGGGAGCGTCTATGCG
CTTCAAGTGGGAGATCGTCGCCTGGAGGTACGAAGAGCGTCGGATAACAA
GCCCacggccatcgccacccaCCCCGCGCGTGTCACagccatcgccttcc
tccctgccgctgccgccgccccgtGTGCTGATGAAGCTAAAAGCTTAGAG
ATTTCTGCGGCGATAGAGCAGCAGGCACCGATGCACCATGTGGTCACGGC
CTGCGACGACGGCATGCTGCGCGTCGTGGATGGAGACACGGGGTCCGTCC
TTTCCTGCACGGAGACGGGCCCGCACTGCGGACGCATCAAGGAGGCTGTG
GTCTGGGGGAACAGGGCCTTGCCCTTCTGGCAACAAAGCCGAGAGCTGGT
GACGGCGTCATCGGATGGGAAGATCCTGGTCTGGCGGGTCGGGCCCGCGG
GCACacaggtggaggtgggacCCGGCGCCGCTTTGGGTGCCGGAGTACGC
ATAACGTGCTTGGCAGCCTACGCTGCTGGCgaggccgtggacgaggggag
ggcttcaAGCGGGACAAGTCTTGGCAAGAATAAAAAGAAACGAAAGCGGG
TgcgtggggaggagacgaaggaggctaACATGGGACCGGACAGGGCCGCG
CCTCGAAAAGGCGAAACTGCGCGGAAGTCCAAGGGAAACAGGCATCGCTC
AGCGAATCGAGGGTCTGGAATGCAAAGTAATGGGGCGCCAAGTAGAGGGA
AAAGCCGAGCGCAGGCATCAAGCAGGGCGAATGTCTGAGCCAGTATCTGC
GGTCATCATGCGCGGGAAACACGCTCGCAACGAGGCCTGAATTTGACTTC
ATAGCATCCCATCGTTTTTGGAAAGAGCAAATAAAAGTGACTGGATGCTC
TGGAGGCGAATCAATGATATCAAAAGCTTATAAAGTAATTGTATCGCCTC
CTAACACATGAAGAAAAGCTCATAAATCGTTCCCAAGAT
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Coding sequence (CDS) from alignment at KK037252.1:185975..187713+

>rna9244 ID=rna9244|Name=rna9244|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at KK037252.1:185975..187713+ (Nannochloropsis gaditana)
ATGATTCGATTCTTGATACAGGATTGGCGGAAAGATTCTTTTTTGTATCC
TTGTGAAGATATGGCAGTAAGAAAGCGATTGATCGGGGCTTATGTCCACG
TTCCCTTCTCGCAGATTTTTGCCTACACCCCGCATCAAGGAAGCGTCCGA
TCGCTGGCTATACCACAAGGGGGGGTCAAAGCTGGGTCTCTTTTAGTGTC
AGGTGGTGTTGACGAGCATATCCGCATGTATGACCTACGAAAACGCGCGG
AAGTCGGCGAGCTTCTACACCATAAGGGTACCATAACCGCCCTGGGCTTT
GTGGGCTCATCCCACTTGCTGAGCGGTAGTGAGGATGGTGCGGTCTGCAT
ATGGCGCGTGTACGATTGGAGCCTTCTTCATATTTTGGGTGGACACAAGG
GAGCTATCACTGCCGTCGCTATACACCCGTCTGGGAAGCTCGCCTTGTCC
TCAGGGCGCGATAGGAGTCTGCGTCTCTGGGATCTGGTTCGTGGCCGTTG
CGCCTACATCACCAAGCTCGAAGCGGTGGTCGAGACCGTCAAATGGTCTG
GCGATGGGAGCGTCTATGCGCTTCAAGTGGGAGATCGTCGCCTGGAGGTA
CGAAGAGCGTCGGATAACAAGCCCacggccatcgccacccaCCCCGCGCG
TGTCACagccatcgccttcctccctgccgctgccgccgccccgtGTGCTG
ATGAAGCTAAAAGCTTAGAGATTTCTGCGGCGATAGAGCAGCAGGCACCG
ATGCACCATGTGGTCACGGCCTGCGACGACGGCATGCTGCGCGTCGTGGA
TGGAGACACGGGGTCCGTCCTTTCCTGCACGGAGACGGGCCCGCACTGCG
GACGCATCAAGGAGGCTGTGGTCTGGGGGAACAGGGCCTTGCCCTTCTGG
CAACAAAGCCGAGAGCTGGTGACGGCGTCATCGGATGGGAAGATCCTGGT
CTGGCGGGTCGGGCCCGCGGGCACacaggtggaggtgggacCCGGCGCCG
CTTTGGGTGCCGGAGTACGCATAACGTGCTTGGCAGCCTACGCTGCTGGC
gaggccgtggacgaggggagggcttcaAGCGGGACAAGTCTTGGCAAGAA
TAAAAAGAAACGAAAGCGGGTgcgtggggaggagacgaaggaggctaACA
TGGGACCGGACAGGGCCGCGCCTCGAAAAGGCGAAACTGCGCGGAAGTCC
AAGGGAAACAGGCATCGCTCAGCGAATCGAGGGTCTGGAATGCAAAGTAA
TGGGGCGCCAAGTAGAGGGAAAAGCCGAGCGCAGGCATCAAGCAGGGCGA
ATGTCTGA
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Synonyms
Publications