rna9240, rna9240 (mRNA) Nannochloropsis gaditana

Overview
Namerna9240
Unique Namerna9240
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length336
Alignment locationKK037252.1:181364..181910 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g32.490.mrna
Orig protein idgnl|cribi|Naga_100019g32.490
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:181364..181910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g32gene8962Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9240rna9240-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21468.1cds9210Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9240 ID=rna9240|Name=rna9240|organism=Nannochloropsis gaditana|type=mRNA|length=336bp
ATGGCCGACAGCCCGGAGGCGAAGGCTGGGGGATCGGGAGTCGACTCCCT
CCGTGCCAAGGCGAAGCTGAGGGGACTGCTGGGTAGCGCGCTGCGGGTGA
CGCTCTCGGACGGGCGGGCGGTGACGGGCCGGTACCAGTGCATGGACGAG
CACCTGAACGTGATCCTGCGAGAGGCCTCGGAGCGGCGGGGCATTGGAGC
GCGGGCGGGGGTGGGGGCCGGGGTGGAGAGCGTGCAGGTGCGGCACCTGG
GGCTGGTGATGCTCCCGGGGAAGCACGTGGTGCGGGTGGAGGTGAAGGGG
CGGGACCCCCTGGAGGTGGCGGGCCCGGGCACGTGA
back to top

protein sequence of rna9240

>rna9240-protein ID=rna9240-protein|Name=rna9240|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MPSIKILFFAAARELVGGVQQVDVEIQPRADSSGVLYLRDVRTYLASAFP
DLDSIIADVTLALNMQYVAAVESLLCVDAPGIRTERCKSETSGCLVNVLN
FHPNVVVTRHRVEAGPRCRQALLCCAGGDIAVCDPAVESKSRVASFVPPS
LPAGDAVGL
back to top

mRNA from alignment at KK037252.1:181364..181910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9240 ID=rna9240|Name=rna9240|organism=Nannochloropsis gaditana|type=mRNA|length=547bp|location=Sequence derived from alignment at KK037252.1:181364..181910- (Nannochloropsis gaditana)
ATGCCGTCAATTAAAATTCTCTTTTTTGCAGCAGCCCGTGAATTAGTGGG
CGGTGTGCAGCAGGTGGATGTTGAGATCCAGCCTCGTGCAGATTCCAGTG
GCGTGCTGTACTTGAGAGACGTGCGGACCTATCTGGCCAGTGCTTTTCCT
GATTTGGACTCAATCATCGCTGATGTCACATTGGCCCTAAATATGCAGTA
TGTGGGTGTAGAGGCGGAGGGCACATTGTCCCTGCAAGACGGGGACGAAG
TCGCCCTAATACCGCCCATCAGCGGCGGTTGAAAGCCTGCTCTGTGTGGA
TGCCCCGGGCATTCGGACTGAACGTTGCAAATCTGAGACTAGCGGATGTC
TGGTGAACGTACTCAACTTCCACCCAAACGTTGTGGTGACACGCCACAGG
GTGGAGGCTGGCCCGAGGTGCCGTCAAGCCCTGCTTTGTTGCGCAGGAGG
CGACATCGCCGTGTGCGACCCAGCCGTTGAGTCAAAGAGCAGGGTTGCCT
CATTCGTGCCTCCTTCCCTTCCCGCAGGCGACGCAGTGGGTCTCTGA
back to top

Coding sequence (CDS) from alignment at KK037252.1:181364..181910-

>rna9240 ID=rna9240|Name=rna9240|organism=Nannochloropsis gaditana|type=CDS|length=960bp|location=Sequence derived from alignment at KK037252.1:181364..181910- (Nannochloropsis gaditana)
CGGCGGTTGAAAGCCTGCTCTGTGTGGATGCCCCGGGCATTCGGACTGAA
CGTTGCAAATCTGAGACTAGCGGATGTCTGGTGAACGTACTCAACTTCCA
CCCAAACGTTGTGGTGACACGCCACAGGGTGGAGGCTGGCCCGAGGTGCC
GTCAAGCCCTGCTTTGTTGCGCAGGAGGCGACATCGCCGTGTGCGACCCA
GCCGTTGAGTCAAAGAGCAGGGTTGCCTCATTCGTGCCTCCTTCCCTTCC
CGCAGGCGACGCAGTGGGTCTCTGAATGCCGTCAATTAAAATTCTCTTTT
TTGCAGCAGCCCGTGAATTAGTGGGCGGTGTGCAGCAGGTGGATGTTGAG
ATCCAGCCTCGTGCAGATTCCAGTGGCGTGCTGTACTTGAGAGACGTGCG
GACCTATCTGGCCAGTGCTTTTCCTGATTTGGACTCAATCATCGCTGATG
TCACATTGGCCCTAAATATGCAGTATGTGGCGGCGGTTGAAAGCCTGCTC
TGTGTGGATGCCCCGGGCATTCGGACTGAACGTTGCAAATCTGAGACTAG
CGGATGTCTGGTGAACGTACTCAACTTCCACCCAAACGTTGTGGTGACAC
GCCACAGGGTGGAGGCTGGCCCGAGGTGCCGTCAAGCCCTGCTTTGTTGC
GCAGGAGGCGACATCGCCGTGTGCGACCCAGCCGTTGAGTCAAAGAGCAG
GGTTGCCTCATTCGTGCCTCCTTCCCTTCCCGCAGGCGACGCAGTGGGTC
TCTGAATGCCGTCAATTAAAATTCTCTTTTTTGCAGCAGCCCGTGAATTA
GTGGGCGGTGTGCAGCAGGTGGATGTTGAGATCCAGCCTCGTGCAGATTC
CAGTGGCGTGCTGTACTTGAGAGACGTGCGGACCTATCTGGCCAGTGCTT
TTCCTGATTTGGACTCAATCATCGCTGATGTCACATTGGCCCTAAATATG
CAGTATGTGG
back to top
Synonyms
Publications