EWM21468.1, cds9210 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21468.1
Unique Name	cds9210
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037252.1:181706..181910 -
Alignment location	KK037252.1:181364..181638 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21468.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100019g32.490.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:181706..181910 -
KK037252.1	supercontig	KK037252.1:181364..181638 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom

Homology

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BLAST of EWM21468.1 vs. NCBI_GenBank
Match: gi|585101698|gb|EWM21468.1| (hypothetical protein Naga_100019g32 [Nannochloropsis gaditana])

HSP 1 Score: 320.087 bits (819), Expect = 1.365e-110
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query:    1 MPSIKILFFAAARELVGGVQQVDVEIQPRADSSGVLYLRDVRTYLASAFPDLDSIIADVTLALNMQYVAAVESLLCVDAPGIRTERCKSETSGCLVNVLNFHPNVVVTRHRVEAGPRCRQALLCCAGGDIAVCDPAVESKSRVASFVPPSLPAGDAVGL 159
            MPSIKILFFAAARELVGGVQQVDVEIQPRADSSGVLYLRDVRTYLASAFPDLDSIIADVTLALNMQYVAAVESLLCVDAPGIRTERCKSETSGCLVNVLNFHPNVVVTRHRVEAGPRCRQALLCCAGGDIAVCDPAVESKSRVASFVPPSLPAGDAVGL
Sbjct:    1 MPSIKILFFAAARELVGGVQQVDVEIQPRADSSGVLYLRDVRTYLASAFPDLDSIIADVTLALNMQYVAAVESLLCVDAPGIRTERCKSETSGCLVNVLNFHPNVVVTRHRVEAGPRCRQALLCCAGGDIAVCDPAVESKSRVASFVPPSLPAGDAVGL 159

The following BLAST results are available for this feature:

BLAST of EWM21468.1 vs. NCBI_GenBank

BLAST of EWM21468.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101698\|gb\|EWM21468.1\|	1.365e-110	100.00	hypothetical protein Naga_100019g32 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9240	rna9240	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications