rna9237, rna9237 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9237
Unique Name	rna9237
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1920
Alignment location	KK037252.1:177596..179108 -

Link to JBrowse

Properties


Property Name	Value
Product	abc transporter family protein
Orig transcript id	gnl\|cribi\|Naga_100019g35.523.mrna
Orig protein id	gnl\|cribi\|Naga_100019g35.523
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:177596..179108 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g35	gene8959	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9237	rna9237-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21501.1	cds9207	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:177596..179108-
coding sequence from alignment at KK037252.1:177596..179108-

mRNA sequence

>rna9237 ID=rna9237|Name=rna9237|organism=Nannochloropsis gaditana|type=mRNA|length=1920bp
ATGAAAGTAGAACTTAAACCGAAAATATCGGTGACGTTTTATGAAGGAGT
GGGAAAGGGGAGCCTACTGGTTGTGCACCTCCGCATGCTGGTATCGCTGG
GCCATTTGAAAGCGCCGCTGTCCGGGGCGGGCCTCATTACCCTATCCCCT
GTCCGCAAAGAGGGCATTGCTCTCCAGGCTCGACTCCCCAATTGTCGTCT
TGCCAGCACCACCAGCAGGGGGAAAATGTCTGCAATGTCTACAGCTGATG
AAAATCTTTCCGATTTTTTTTCTGGCCGGAAAGTCCATCAGTCTGCCCTG
GCTTTAATGCCTGACATGGACTCGTCGCTCTTTACGGCCATCCAGTCTAT
TCGACGCTCTCACGACAAGCATTATAGGCGGTGGCCACCTCACGTCAACA
TCATCTATCCATTCGTGCCAGAGTATGAATTTGATGTTGCTGCTCGCGTC
CTCCAAAAAGCATTGTCCTCCTTCGCGGTCATCGACGATTGTACAATGGC
CCGGATGGGCTACTTCGAACACGGGAGATCCTCCTGCACAGCGTGGCTGG
CCCCGCAAGAAGCGCGATTGAGCGATGCAGAGCTTCGACACGAAGAAGAA
CTTGCCAGCCCAGCACCGCATCCGAGAATTATACAGCTACAGGCTGCTTG
CCAAGCTGCGATACCTCACTGCGCCGACCTGACCGCCTCTTTCGGAGGGA
GATTTACACCGCACCTGTCCATAGGCCAGTTCCAGGATCGAAAGGGCGCG
AAAGATTTCATCGACTCGGTCGACTGGGTTGCAGAGGTCTTCCCAGTGCG
TCAGCTGTACCTGCTGGCGAGAAACGGGCCTACGGACCCCTTCAGTGTGC
GCTATATCGTCCGCTTGGCCGGCGGCAGCGTGACAAGAGTAGAGCCCGGT
ACACTCCCACGCCATGCAGGCGCTACCGTCGCCGATCAGGGTTTCTTTCG
CCTGAGTGCTGGCACAAAGAACGCAACACCTCCTGCCCGCATAAACCCAG
CAGAGGTGGAGGTAGACGGGAGCTTGCTAGAGGGAGGGGGGCAAGTCCTG
CGCACTTCCCTGGCCCTAAGCATCTTACTACGAAAGCGCCTTCGCATCAG
CTCCATTCGATCTGGTAGAAGCAAGCCGGGCCTGCAGCCTCAGCATTTGG
CCGGTGTCAGGCTGGTCGCCGAGATCGGTAGGAGCAGCGTGGAGGGTGCC
AACTTGGGCAGCATGGAGCGTGTACTTGCGTTTGCAACTGGCATTGTAAC
GGCTGGGAGCGGCGCAGATAAGCGCCTGGTGGAGGGGCTCGGGGATGTGC
TGGGTAATGTGTTGGAGGAGGTTTTCGGCGGCCAGATAGCCATTGAGTAC
CGAGACAACGTGTGGAGACAGGAGCCCTTCTCCGGGCGGGAGCAAGAAGG
GGGAGGAGGCGGCGGGCGACGTCAAGGGTTCGCAACGAGAAAACGGGCCC
GCGGAAGGCTCAAGCGTGAGGTCTTCCACCTCCTCTTGGTCCTAGAATCG
ACCAGCGGATGCCGTCTGGGCGCAGACATGTTGCTGGAAGATTTGCGGCA
ATTCCAAAACCACACCAACGGGAAGCCTGATGGGTCAGGAGATCATAACG
GCGACAGACATTTTGAGAAGGAGGGTGAGCAGCGACGCGTCTGCTCTGAA
CTCGCCAGCACCCTTCGCAAGTGTCAAGCGGCGGGAGCTTGCGTCGATGA
ACACACACTTGATCAGTTGGTGATGTACATGGCTTTGGCGCAGGGTACCT
CCCGTGTGCTTGGGCCGCCACGATCATTCTTGTCTTCGAATCATGTTGCG
ACCGCCATCCGTATCACAGAACAGCTGCTCGGAGTCAGCTTCAAAATGTG
GAGTGACAAAAGTTATGGGCCTTTGACTGTTGAAATTGCGCAAGGGCATG
CTTTCACTCTAGAGACGTAG

protein sequence of rna9237

>rna9237-protein ID=rna9237-protein|Name=rna9237|organism=Nannochloropsis gaditana|type=polypeptide|length=319bp
MTDLTKTPLKPEEDVTGPFLPNDAVLIRELNFSYGDRPVLKGINMRLKRG
SRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRA
YMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGI
DPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRW
LRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHY
RELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPT
LSGGGFAAGRMYDHFHEGV

mRNA from alignment at KK037252.1:177596..179108-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9237 ID=rna9237|Name=rna9237|organism=Nannochloropsis gaditana|type=mRNA|length=1513bp|location=Sequence derived from alignment at KK037252.1:177596..179108- (Nannochloropsis gaditana)
ATGACCGACCTTACCAAGACTCCGCTTAAGCCAGAGGAGGATGTGACTGG
TCCTTTTTTGCCTAACGACGCTGTCCTCATCCGAGAGCTAAATTTTTCCT
ACGGTGACCGTCCAGTAAGCTTTAAAGAAGGAGGGCTTGAGGCATGGGGA
CGCACGTGCGTGGTGGTTCGACTGCCCGAACACGCTCTTTCGACTGACGT
TCGTCACGTCTACGTTTACCCCCAACCCCGATAGGTTTTAAAGGGTATCA
ATATGCGGCTTAAAAGAGGTAGCCGGTACGTAACTCCTCCATCGTACACG
CCTGATGTGTTTGGTGAATTGTGGTAGCATGTACGTCACTCTCTCATCAC
TCATCGCGACCTAGACATGTTTCTGAGCAATGCTGTTTTAGCATTAATGC
GATGCTTCTACTTTAACCTGAATCAGACATCTTCTCGACATTCATGGTAT
CTAGCTGTCAAAGCCCAACTTTTCCTTCGGGAAGAGACATGGTGGCTTCG
TGCCACCTCGACCGCGGGTGCCATCGATCCAATACATCTTGTGTAAATTT
TATTTGACTTGCCCTGCGCAAGCCATCTGAACATTCATTATCAACATGAA
GCTTGCATAACGCTTATATGAGGTCTTTTCCGTGACGCTGCCGCTTGAAT
CGCTCCCCTCTCCCTAATCTCCCTTCGCTTGTCCCCCCCAATCCGTTCTA
TTTCCAAGATGCCTTCTTATCGGCGCGAACGGAGCGGGGAAAAGCACGCT
ACTCCGTATCCTAGGAGGACGGCACTTGACTAAGCCTGACGACGCGGTGA
CCGTGATGGGGATGCACGCTTTCCGAGACACCAAGCTGAACCTGATCCGG
GCGTACATGGACACGGACTGGGGAATGCGCACGGTCGCCTTCGCGGGCTA
CGGGGTCCCGCTGCAGGCAGACATCCCCGTCACCGGCATGATGAGTAAGC
TGCAGAGCCAGCACCCAGAGAGACGGGACGAGCTCCTGGAGCTTCTGGGA
ATCGACCCGGAGTGGCGCATGAACAGGGTCTCGGACGGACAGCGCCGACG
CGTGCAGCTCTTCTTAGGCCTGGTCCGCCCCTTCGAAATCCTTCTTCTTG
ATGAAGTAACCGTGTCTCTGGATGTTGTGGTGCGCCAAGACTTGCTGCGC
TGGCTACGGCGGGAGACGGAGGTGAGGGGCGCCACGGTGATATACGCTAC
CCACATCTTCGACGGCCTCGACGACTGGCCTTCGCATCTGCACTTCATGA
CCAATCAGGGTCGTACCGGGTGGCAGGGGAAGCTGGAAGATCTCGATCAC
TACCGAGAGCTCCGCAGGGCCGGCGACCCTGGGCCTCTGCTGCGCATCGC
CGAGAGGTGGCTGCGGACAGAGACAGAGGAGCAGAAGCGGCGGAAGTTGC
GGGAGAAGGAGCTTGGGACTCAGGTGCTCGACGACAAGCTGTCCCAACCC
ACACTGTCAGGAGGAGGATTCGCAGCAGGGCGTATGTACGACCATTTCCA
TGAGGGTGTCTGA

Coding sequence (CDS) from alignment at KK037252.1:177596..179108-

>rna9237 ID=rna9237|Name=rna9237|organism=Nannochloropsis gaditana|type=CDS|length=2880bp|location=Sequence derived from alignment at KK037252.1:177596..179108- (Nannochloropsis gaditana)
ATGCCTTCTTATCGGCGCGAACGGAGCGGGGAAAAGCACGCTACTCCGTA
TCCTAGGAGGACGGCACTTGACTAAGCCTGACGACGCGGTGACCGTGATG
GGGATGCACGCTTTCCGAGACACCAAGCTGAACCTGATCCGGGCGTACAT
GGACACGGACTGGGGAATGCGCACGGTCGCCTTCGCGGGCTACGGGGTCC
CGCTGCAGGCAGACATCCCCGTCACCGGCATGATGAGTAAGCTGCAGAGC
CAGCACCCAGAGAGACGGGACGAGCTCCTGGAGCTTCTGGGAATCGACCC
GGAGTGGCGCATGAACAGGGTCTCGGACGGACAGCGCCGACGCGTGCAGC
TCTTCTTAGGCCTGGTCCGCCCCTTCGAAATCCTTCTTCTTGATGAAGTA
ACCGTGTCTCTGGATGTTGTGGTGCGCCAAGACTTGCTGCGCTGGCTACG
GCGGGAGACGGAGGTGAGGGGCGCCACGGTGATATACGCTACCCACATCT
TCGACGGCCTCGACGACTGGCCTTCGCATCTGCACTTCATGACCAATCAG
GGTCGTACCGGGTGGCAGGGGAAGCTGGAAGATCTCGATCACTACCGAGA
GCTCCGCAGGGCCGGCGACCCTGGGCCTCTGCTGCGCATCGCCGAGAGGT
GGCTGCGGACAGAGACAGAGGAGCAGAAGCGGCGGAAGTTGCGGGAGAAG
GAGCTTGGGACTCAGGTGCTCGACGACAAGCTGTCCCAACCCACACTGTC
AGGAGGAGGATTCGCAGCAGGGCGTATGTACGACCATTTCCATGAGGGTG
TCTGAGTTTTAAAGGGTATCAATATGCGGCTTAAAAGAGGTAGCCGATGA
CCGACCTTACCAAGACTCCGCTTAAGCCAGAGGAGGATGTGACTGGTCCT
TTTTTGCCTAACGACGCTGTCCTCATCCGAGAGCTAAATTTTTCCTACGG
TGACCGTCCAATGCCTTCTTATCGGCGCGAACGGAGCGGGGAAAAGCACG
CTACTCCGTATCCTAGGAGGACGGCACTTGACTAAGCCTGACGACGCGGT
GACCGTGATGGGGATGCACGCTTTCCGAGACACCAAGCTGAACCTGATCC
GGGCGTACATGGACACGGACTGGGGAATGCGCACGGTCGCCTTCGCGGGC
TACGGGGTCCCGCTGCAGGCAGACATCCCCGTCACCGGCATGATGAGTAA
GCTGCAGAGCCAGCACCCAGAGAGACGGGACGAGCTCCTGGAGCTTCTGG
GAATCGACCCGGAGTGGCGCATGAACAGGGTCTCGGACGGACAGCGCCGA
CGCGTGCAGCTCTTCTTAGGCCTGGTCCGCCCCTTCGAAATCCTTCTTCT
TGATGAAGTAACCGTGTCTCTGGATGTTGTGGTGCGCCAAGACTTGCTGC
GCTGGCTACGGCGGGAGACGGAGGTGAGGGGCGCCACGGTGATATACGCT
ACCCACATCTTCGACGGCCTCGACGACTGGCCTTCGCATCTGCACTTCAT
GACCAATCAGGGTCGTACCGGGTGGCAGGGGAAGCTGGAAGATCTCGATC
ACTACCGAGAGCTCCGCAGGGCCGGCGACCCTGGGCCTCTGCTGCGCATC
GCCGAGAGGTGGCTGCGGACAGAGACAGAGGAGCAGAAGCGGCGGAAGTT
GCGGGAGAAGGAGCTTGGGACTCAGGTGCTCGACGACAAGCTGTCCCAAC
CCACACTGTCAGGAGGAGGATTCGCAGCAGGGCGTATGTACGACCATTTC
CATGAGGGTGTCTGAGTTTTAAAGGGTATCAATATGCGGCTTAAAAGAGG
TAGCCGATGACCGACCTTACCAAGACTCCGCTTAAGCCAGAGGAGGATGT
GACTGGTCCTTTTTTGCCTAACGACGCTGTCCTCATCCGAGAGCTAAATT
TTTCCTACGGTGACCGTCCAATGCCTTCTTATCGGCGCGAACGGAGCGGG
GAAAAGCACGCTACTCCGTATCCTAGGAGGACGGCACTTGACTAAGCCTG
ACGACGCGGTGACCGTGATGGGGATGCACGCTTTCCGAGACACCAAGCTG
AACCTGATCCGGGCGTACATGGACACGGACTGGGGAATGCGCACGGTCGC
CTTCGCGGGCTACGGGGTCCCGCTGCAGGCAGACATCCCCGTCACCGGCA
TGATGAGTAAGCTGCAGAGCCAGCACCCAGAGAGACGGGACGAGCTCCTG
GAGCTTCTGGGAATCGACCCGGAGTGGCGCATGAACAGGGTCTCGGACGG
ACAGCGCCGACGCGTGCAGCTCTTCTTAGGCCTGGTCCGCCCCTTCGAAA
TCCTTCTTCTTGATGAAGTAACCGTGTCTCTGGATGTTGTGGTGCGCCAA
GACTTGCTGCGCTGGCTACGGCGGGAGACGGAGGTGAGGGGCGCCACGGT
GATATACGCTACCCACATCTTCGACGGCCTCGACGACTGGCCTTCGCATC
TGCACTTCATGACCAATCAGGGTCGTACCGGGTGGCAGGGGAAGCTGGAA
GATCTCGATCACTACCGAGAGCTCCGCAGGGCCGGCGACCCTGGGCCTCT
GCTGCGCATCGCCGAGAGGTGGCTGCGGACAGAGACAGAGGAGCAGAAGC
GGCGGAAGTTGCGGGAGAAGGAGCTTGGGACTCAGGTGCTCGACGACAAG
CTGTCCCAACCCACACTGTCAGGAGGAGGATTCGCAGCAGGGCGTATGTA
CGACCATTTCCATGAGGGTGTCTGAGTTTTAAAGGGTATCAATATGCGGC
TTAAAAGAGGTAGCCGATGACCGACCTTACCAAGACTCCGCTTAAGCCAG
AGGAGGATGTGACTGGTCCTTTTTTGCCTAACGACGCTGTCCTCATCCGA
GAGCTAAATTTTTCCTACGGTGACCGTCCA

Synonyms

Publications