EWM21501.1, cds9207 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|585101731|gb|EWM21501.1| (abc transporter family protein [Nannochloropsis gaditana]) HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0 Query: 1 MTDLTKTPLKPEEDVTGPFLPNDAVLIRELNFSYGDRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGRMYDHFHEGV 319 MTDLTKTPLKPEEDVTGPFLPNDAVLIRELNFSYGDRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGRMYDHFHEGV Sbjct: 1 MTDLTKTPLKPEEDVTGPFLPNDAVLIRELNFSYGDRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGRMYDHFHEGV 319
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|224005773|ref|XP_002291847.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972366|gb|EED90698.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 368.622 bits (945), Expect = 2.916e-124 Identity = 180/315 (57.14%), Postives = 232/315 (73.65%), Query Frame = 0 Query: 2 TDLTKTPLKPEEDVTGPFLPNDAVLIRELNFSYGD---RPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGRMYD 313 TD T KP + P+ N A+ I +L FSY +P L+ +N++L +GSRCLLIGANG+GKSTLLR++ GRHL KP+ +TV+G+++FRDT+LN RAY++T WG++TVAFAG GVPL ADIPV MM KLQ+ +PERRDEL+E+LGIDP WRM+ +SDGQRRRVQL + LVRPF ILLLDEVTVSLDV VRQDLL+WL +E+ RGAT+IYATHIFDGLDDW +HL+++ N G GWQG+++DL+ Y L+ A P +L IA+ WLR E E+ ++ + EK G D L T GG+A+GR D Sbjct: 5 TDTTTPKPKPLPTIP-PYDANKAISITDLTFSYDPSTLKPTLENLNLQLPQGSRCLLIGANGSGKSTLLRLISGRHLAKPEGCITVLGLNSFRDTRLNFHRAYLETGWGLQTVAFAGCGVPLMADIPVFKMMEKLQNAYPERRDELIEMLGIDPNWRMHMLSDGQRRRVQLLIQLVRPFTILLLDEVTVSLDVCVRQDLLKWLEKESVERGATIIYATHIFDGLDDWATHLYYLNNNGSCGWQGEMKDLELYHTLKAANHPCKMLAIADNWLRKELEDNRKNRRLEKAQGEMAYQD-LVDVTDRNGGYASGRNID 317
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|1210531954|dbj|GAX09382.1| (CCR4-NOT complex subunit CAF16 [Fistulifera solaris]) HSP 1 Score: 360.918 bits (925), Expect = 3.774e-121 Identity = 179/321 (55.76%), Postives = 230/321 (71.65%), Query Frame = 0 Query: 8 PLKPEEDVTGPFLPNDAVLIRELNFSYG-------------DRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTK---PDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPT-LSGGGFAAGRM 311 P++P+ P +A+ I+ L F+Y ++ +L+ +N+ L++GSRCLLIG NG+GKSTLLRIL GRHLTK P V V+G+HAF DT+LN RAY+D DWGMR VAF G VPL ADIPV MM +LQ+ +PERR ELLE+L ID WRM+++SDGQRRRVQ+FLGL+RPF+ILLLDE+T SLDV VRQDLLRWL RE+E RGAT+IYATHIFDGLDDW SHL ++TN+G+ GWQGK+E+L+ Y +L+ P +L IA+ WLR E E +R + E G V +L PT +S GG+A+GR+ Sbjct: 3 PIQPKPLPEIPPYGENAIDIQNLTFAYSAGSNGSSLDKIDPNKCILRDLNLSLRKGSRCLLIGGNGSGKSTLLRILAGRHLTKNPNPQSHVKVLGLHAFHDTRLNFHRAYLDCDWGMRNVAFVGAAVPLMADIPVHKMMERLQASYPERRQELLEMLNIDINWRMHQLSDGQRRRVQIFLGLIRPFQILLLDEITTSLDVCVRQDLLRWLVRESEERGATIIYATHIFDGLDDWASHLFYLTNKGQCGWQGKMEELEVYHKLKAENHPCKMLAIADHWLRAELNENRRLQQFEPAQGAAV---RLPDPTDISQGGYASGRL 320
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|1210520912|dbj|GAX20293.1| (CCR4-NOT complex subunit CAF16 [Fistulifera solaris]) HSP 1 Score: 359.377 bits (921), Expect = 1.268e-120 Identity = 178/321 (55.45%), Postives = 230/321 (71.65%), Query Frame = 0 Query: 8 PLKPEEDVTGPFLPNDAVLIRELNFSYG-------------DRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTK---PDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPT-LSGGGFAAGRM 311 P++P+ P +A+ I+ L F+Y ++ +L+ +N+ L++GSRCLLIG NG+GKSTLLRIL GRHLTK P V V+G+HAF DT+LN RAY+D DWGMR VAF G VPL ADIPV MM +LQ+ +PERR ELLE+L ID WRM+++SDGQRRRVQ+FLGL+RPF+ILLLDE+T SLDV VRQDLLRWL RE+E RGAT+IYATHIFDGLDDW SHL ++TN+G+ GWQG++E+L+ Y +L+ P +L IA+ WLR E E +R + E G V +L PT +S GG+A+GR+ Sbjct: 3 PIQPKPLPDIPPYGENAIDIQNLTFAYSAGSNGSSLDKIDPNKCILRDLNLSLRKGSRCLLIGGNGSGKSTLLRILAGRHLTKNPNPHSHVKVLGLHAFHDTRLNFHRAYLDCDWGMRNVAFVGAAVPLMADIPVHKMMERLQASYPERRQELLEMLNIDVNWRMHQLSDGQRRRVQIFLGLIRPFQILLLDEITTSLDVCVRQDLLRWLVRESEERGATIIYATHIFDGLDDWASHLFYLTNKGQCGWQGQMEELEVYHQLKAENHPCKMLAIADHWLRAELNENRRLRQFEPAQGAAV---RLPDPTDISQGGYASGRL 320
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|219111661|ref|XP_002177582.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410467|gb|EEC50396.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 354.369 bits (908), Expect = 2.135e-118 Identity = 181/313 (57.83%), Postives = 226/313 (72.20%), Query Frame = 0 Query: 18 PFLPNDAVLIRELNFSY-------------GDRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDD------AVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGRM 311 P+ PN A+ I+ L F+Y VL+ +N+ L GSRCLLIGANG+GKSTLLRIL GRHLTK D A V+G++AF DT+LN RAY+D DWGMR VAF G VPL ADIPV MM KLQ+ +PERRDELL++LGID +WRM+++SDGQRRRVQ+FLGLVRPF+ILLLDE+T SLDV VRQDLLRWL RE++ RGAT+IYATHIFDGLD+W +HL+++ N+G+ GWQGK++DLD Y++L+ P +L IAE WLR E E K +EK G L +L PT + GGF +GR+ Sbjct: 16 PYGPN-AIDIQNLTFTYLAGANGSSLSTPEDANLVLEKLNLNLGTGSRCLLIGANGSGKSTLLRILAGRHLTKSMDPEGNPSATKVLGLNAFHDTRLNFHRAYLDCDWGMRNVAFVGAAVPLMADIPVRNMMQKLQASYPERRDELLDMLGIDLDWRMHQLSDGQRRRVQIFLGLVRPFQILLLDEITTSLDVCVRQDLLRWLVRESDNRGATIIYATHIFDGLDEWATHLYYLNNRGQCGWQGKMQDLDVYQKLKAEAHPCKMLAIAEHWLRQEINEAKANNQKEKAQG--ALAHQLD-PTDNQGGFGSGRL 324
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|397567301|gb|EJK45508.1| (hypothetical protein THAOC_35875, partial [Thalassiosira oceanica]) HSP 1 Score: 345.51 bits (885), Expect = 5.978e-116 Identity = 161/273 (58.97%), Postives = 211/273 (77.29%), Query Frame = 0 Query: 38 PVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGR 310 P L ++++L GSRCLLIGANG+GKSTLLR++ GRHL KP+ + V+G++A+RDT+LN R+Y++T WG+ TVAFAG GVPL ADIPV MM +Q+ PERRDEL+ELLGIDPEWRM+ +S+GQRRRVQL + LVRPF+ILLLDEVTVSLDV VRQDLLRWL RE+ RGAT++YATHIFDGLDDW +HL ++T++G GW G+++DL++Y+ L+ P +L +A+ WLR E EE +R++ EK G PT + GG+A+GR Sbjct: 8 PTLNKLDLQLPTGSRCLLIGANGSGKSTLLRLISGRHLAKPEGCINVLGLNAYRDTRLNFHRSYLETGWGLTTVAFAGCGVPLMADIPVKEMMKSVQNAFPERRDELMELLGIDPEWRMHMLSEGQRRRVQLLIQLVRPFQILLLDEVTVSLDVCVRQDLLRWLERESSERGATIVYATHIFDGLDDWATHLFYLTSEGNCGWSGEMKDLEYYQRLKAENHPSKMLAVADHWLRRELEENRRKRRFEKAQGEMAYQ---LDPTDNQGGYASGR 277
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|1072235409|gb|OEU20138.1| (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 336.265 bits (861), Expect = 5.072e-112 Identity = 161/273 (58.97%), Postives = 211/273 (77.29%), Query Frame = 0 Query: 39 VLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDA-VTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGR 310 VL +N++LK GSRCLLIGANG+GKSTLLRIL GRHLT+ V ++G+++FR+TKLN RAY++TDWGM ++AF G VPL ADIPV MM KLQ+ +PERRDEL+ +LGID +W M+++SDGQRRRVQ+ +GLVRPF+ILLLDE+T SLDV VRQDLL+WL +E+E RGAT++YATHIFDGLD+W S L ++TN+G+ GWQG++E+L+ Y++L+R P +L IA+ WLR E EQ+ + EK LD PT GG+A+GR Sbjct: 32 VLHNLNLKLKTGSRCLLIGANGSGKSTLLRILAGRHLTQHQGGDVKILGLNSFRETKLNFHRAYLNTDWGMTSMAFVGASVPLCADIPVRKMMEKLQNSYPERRDELVRMLGIDLDWHMHQLSDGQRRRVQIMIGLVRPFKILLLDEITTSLDVCVRQDLLQWLVKESEERGATILYATHIFDGLDEWASDLFYLTNKGKCGWQGRMEELELYQQLQRDNHPAKMLAIADHWLRKELNEQRAKNQYEKAQYAVELD-----PTDRQGGYASGR 299
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|676387649|ref|XP_009037103.1| (hypothetical protein AURANDRAFT_64176 [Aureococcus anophagefferens] >gi|323452511|gb|EGB08385.1| hypothetical protein AURANDRAFT_64176 [Aureococcus anophagefferens]) HSP 1 Score: 331.257 bits (848), Expect = 1.945e-102 Identity = 165/260 (63.46%), Postives = 197/260 (75.77%), Query Frame = 0 Query: 24 AVLIRELNFSYGD-------RPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEE 276 AV I L+F+Y R VL G +M+LK GSRCLL+GANG+GKSTLL++L G+HL D+ V VMG FRD KLNL RA++DT WGMRTVAFAGYG PLQADI V GMM KLQ HPERRDEL+++LG+DPEWRM+RVSDGQRRRVQL LGL VT LDV+VRQDLL WL++E EVRGATV+YATHIFDGLDDWP+H+H++ G+TGWQG+++DLD Y +LR+ G P PLL+IA WLR E E Sbjct: 24 AVEIDRLDFAYPQSLPTDEARMVLNGFSMQLKPGSRCLLLGANGSGKSTLLKLLAGKHLVSGDN-VKVMGTDPFRDLKLNLTRAFLDTQWGMRTVAFAGYGCPLQADIRVGGMMRKLQDAHPERRDELVKILGVDPEWRMHRVSDGQRRRVQLLLGL-----------VTTCLDVIVRQDLLLWLQKECEVRGATVLYATHIFDGLDDWPTHIHYLNRFGKTGWQGEMKDLDLYTKLRKEGHPSPLLKIATTWLRAELAE 271
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|1179520404|ref|XP_020682029.1| (ABC transporter I family member 20 [Dendrobium catenatum]) HSP 1 Score: 250.751 bits (639), Expect = 3.884e-78 Identity = 139/309 (44.98%), Postives = 199/309 (64.40%), Query Frame = 0 Query: 25 VLIRELNFSY---------GDRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIR--AYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLE---DLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSG-------GGFAAGRMY 312 V IR L F+Y G +P++ G +++L G RCLL+G+NGAGK+T+L+ILGG+H+ PD V +MG AF DT L +Y+ +W R VAFAG+ V +Q DI M+ + P+RRDEL+++L ID WRM+R SDGQRRRVQ+ +GL++PF++LLLDE+TV LDVVVR +LL +L++E E RGAT+IYATHIFDGL+DWPSH+ ++ + GKL+ LD +EL L+R E+WLR E +E ++R+ KE G ++ + ++G G+AAGR++ Sbjct: 24 VEIRNLRFTYPGIDGHPPPGSKPLIDGFSLQLHAGDRCLLVGSNGAGKTTILKILGGKHIVDPD-MVRIMGRSAFHDTALTSSGELSYLGGEW-RRDVAFAGFEVTIQMDISAEKMIYGVSGVDPQRRDELIKVLDIDLSWRMHRSSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVVVRSNLLIYLKKECERRGATIIYATHIFDGLEDWPSHIVYVAH-------GKLQLALPLDKVKELSNL----SLMRTVEKWLRKERDEDRKRRKERKENGLPEYENSVDGTRVTGDPARMLNNGWAAGRLH 319
BLAST of EWM21501.1 vs. NCBI_GenBank
Match: gi|168042138|ref|XP_001773546.1| (ATP-binding cassette transporter, subfamily I, member 9, ABC component protein PpABCI9 [Physcomitrella patens] >gi|162675085|gb|EDQ61584.1| ATP-binding cassette transporter, subfamily I, member 9, ABC component protein PpABCI9 [Physcomitrella patens]) HSP 1 Score: 249.98 bits (637), Expect = 8.037e-78 Identity = 144/322 (44.72%), Postives = 204/322 (63.35%), Query Frame = 0 Query: 13 EDVTGPFLPNDAVLIRELNFSY---------GDRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNL--IRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKR-RKLR----------EKELGTQVLDDKLSQPTLSGGGFAAGRMY 312 +DV P + V I L F+Y G +P+++ ++ L G RCLL+GANGAGK+TLL+ILGG+H+ PD V V+G AF DT L AY+ +W R VAFAG+ VPLQ DIP M+ LQ ERRD L+++L ID +WRM++VSDGQRRRVQ+ +GL+RP+++LLLDE+TV LDV+ R DL+ +LR E E RGAT+IYATHIFDGL+ WP+H+ +++ +G + + ++ +EL L+R ERWLR E EEQ+R RK R + GT+V+ + + ++ G+A GR++ Sbjct: 6 QDVAKPVI----VHINRLKFTYPGIDGAPPPGAKPLIQDFSLTLHAGDRCLLVGANGAGKTTLLKILGGKHMVDPD-MVRVLGRSAFHDTALTSSGALAYLGGEW-RRDVAFAGFDVPLQMDIPAEKMIFGLQGVDAERRDRLIKVLDIDLKWRMHKVSDGQRRRVQICMGLLRPYQVLLLDEITVDLDVLARADLMGFLRSECEERGATIIYATHIFDGLESWPTHMAYVS-KGTLRFAKPIGEIAEMKEL-------SLMRTVERWLRKEIEEQRRIRKERLANGLPEFEDQNPDGTRVIGEAAKKAAMN-NGWAGGRLH 312 The following BLAST results are available for this feature:
BLAST of EWM21501.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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