rna9235, rna9235 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9235
Unique Name	rna9235
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2226
Alignment location	KK037252.1:172020..174471 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100019g37.525.mrna
Orig protein id	gnl\|cribi\|Naga_100019g37.525
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:172020..174471 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g37	gene8957	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21503.1	cds9205	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9235	rna9235-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:172020..174471-
coding sequence from alignment at KK037252.1:172020..174471-

mRNA sequence

>rna9235 ID=rna9235|Name=rna9235|organism=Nannochloropsis gaditana|type=mRNA|length=2226bp
AAAAATGTAAGAGGTGAATTGATTATGTTATATTAATTCACACACTACAC
CGTATTGGCGGGCCCGACAATTGGGCAACAGTCCTCAGCGCCCCCCATCG
CTTGGGCCTGGCGAAGCTAGCGACAGGCGGCTTCCACGCTTGAACATGCC
AGCGACATGCAGCAAGCACGCAAATTCTATCTCGAAAACCAAGCATACCC
CTGAATATACACTACATAGTTCTGTGAAAGCCCTAATTCCATTTGAAGAA
TGCGGGCCAATATGGTTATCGATCGTTGAACAAGCCTTCCTGTCTCTGCC
CTTTCAACTCTGTCACCAAACCCATCATGATCTCCGACGAGGTGGAGCCC
CGGCAGCAGCTTCTCCCTCCCTCCTCTTCAGCGCCTTCGGCTGAACATTT
TTTGTCCCCATCCTTCCGGTCACTGGAGCGCTTAAGGGCGGCATTGGACC
AATTAGGTGAAGAGCTTCAACGAAGGGCTCCTTCTCGGAAGGCCGCATCG
GCTCTGGCGCTCGGCGTGCTTACGGCTTTATACTTGCGTTGGAGCAAAGA
CGAGGTTCACGTTTACGCACAACGCAATGAAATGACGGAGATCATTATGG
TGTTTTTGAGTTTGGACGCCAAGTCAGCCTTTAAGAGCACTTGGGCAACC
CACAACGGTCATTTTTCCACCCTCCAGGGGTACCTACGCCCTCAGCCCCC
ATGCCTGCCATGCACGCGTGAGCTAATTTACGCAGACGATGGTGGACATT
TTGCTCTCGAATGGTTAAATGAGCGCGTGTCGGACTCGTTGGAAGCGAGT
GCGAGAAGCCCTGAGAATATGCTTGGTCTGGCGGAGGATTTGCGAACCAG
GCCCATAGTCTGCATCCTCCACGGCGTCAACGACAGCGGCCAACACCCCT
ACATGCGGCATCTGGCCCATGTTGTATGTACTCGAAAGGGCTGGCGTGCA
GTGTGCATGACCTACCGGGGATGCGGCTCCCTGTCCTTGACATCGGCGCA
AGCCTACGACGCCGCCAACACAGGAGACGTGGCCTTGGCCGTTGAGACGA
TCTGTGCACGCTTCCCCGCCGCCCCGTTGTTCCTGGTGGGGTTCTCCTTG
GGGGCGAACATTATGGTTAAGTATCTGGGAGAGCAAGGGGCCCGGGTGCG
GCAGAGAGTGTGGGGCGCGGTCGCCATTTCCAATCCGTGGGCCTTCCATC
CCCACCTCGAGTCTCTGCACTACACGAGCAAGCCCCGCAGCCTCCGCCGG
ATTCCAGCGTGGATCTACTCCTTTTTGGTCGCGTATGAGTACAAGAAGTA
TGTGCGACGTCATAGAGCGCAGCTGGCGGATCGTCTGAAAGCGCTGCAGC
GGCCACTGGAAAGCATGCACACCTTGCGCGACCTCGATGAGAACATCACA
GTCCCCTTGAACGGGTGGAAGGACCTGGAGCATTACATGACCAGCGCTAG
CAGCTCGGAATGGCTGAGGCATGTGGAAGTCCCGCTCTTGGGCGTCAACG
CTTTGGACGATCCACTGGTGAGCCGCGAGGCCCTGACCCACACCATCGAG
CGGGCGAGCAGGAATCCGAATGTCATCCTCGTCACCACCACCCGCGGCGG
GCACATCGGCTGGGGGGGACAGGCAAAAACTGCTAGCTGGGCCGAAAATT
TGTGCGTGGACTTCTTGCAGGCATGCGCACGGATGCAGGACACGATGGGG
GATTCACGAGGACATGTGCTGAATAAGGGGCCGGAGGGTGAAGAAATGAA
GAGAGAGGGCAACAAAACCTTGTTATCGCGCTTATAGGCGAGCGTACGGC
GCGGAAAAGAAATTTGTGCAGTAAAGACATCTTTTGAAACGATAGCAGTC
AGAAGTGTAATAGAAATAATCCTTTGTTTCTGAATGATCGCTTGTTCATG
CGGGAAAAGGGAGATTGAGAAAGTTGAACGGGGCGTGATCAATCACATAT
CATTCAGAGGGGGATTCTGGAGGACTATGGTTTCTTAAAAGTATTGACAT
TTATTCTTTTCAAAGGTCCAATATTTGACGGGCAGAGTTCGTCGTAGCGC
AAAGACAGACAAGTCTTCGCAATTCTCACGCGAAAGTCCATGCCAGAAAT
TGACCATTTCAATAGTGAGGGCCGGACACAGAGAAATTCCTCTGCAAAAT
GCATATTCATCGAGCTAAACCACAGGCACACGGATCTACAAGATGTTGCT
TGCCATTGGAGTGGCAATCTGGCAGC

protein sequence of rna9235

>rna9235-protein ID=rna9235-protein|Name=rna9235|organism=Nannochloropsis gaditana|type=polypeptide|length=485bp
MSSQNGLFMLLPRGPVWRSEDVKSMVGFMDEFNRRADEADSLQLLETFNF
IVEAVGIDACVEALDQVKKQQQIQLSQQAPFRCGSKSTSAPKEGTSMDAV
GGPQAHEVMQSITHSHAGGKGQGPPTAVAASEATMATNGTGANHEWSDAG
VVAATVLHTVTPGESKPPCLSISQLDKGAALPGTATQQGEASSYIGSESS
TAATATTSVSSSPSAGDRPFPMLQPATLSWAGVPPVPSSVSSLPDSAARV
PMDPVSYPFGSVTGQLPFHSGRNGGDAVDEMGAARSEPSLFGQPPRRSLS
TSVPIEATASQGLVSTLEEDGYIPTPRNDGPWHYLGTLPESNASSTSASG
RRGTEKLTGAGSGALPSTNSVSSAGSDDDGKHRPAAMNFGRYGDHLPYNG
RKICRVKNCDGNQRWPDYLCGQHGGGRCRWEGCSLFHQGINSMGLLLCGK
HCKAVGATYRRPRPAAQKTERGNGGGFGSTTRKRR

mRNA from alignment at KK037252.1:172020..174471-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9235 ID=rna9235|Name=rna9235|organism=Nannochloropsis gaditana|type=mRNA|length=2452bp|location=Sequence derived from alignment at KK037252.1:172020..174471- (Nannochloropsis gaditana)
TCCAAATGGCTTAAAATTTTGTTCCGACCGACCTTTGAAAAATGCCATGA
CCCTCATAAACGAGACCACACGCGCATGGACCGTGGAGGTCTCTGTTTGC
GGCCCCCTCGCAAGCGATGAACCAAAAACATCTACAGTGTATTTGATTAG
CTTCAAAAAAGAGGCTCTTGTTCTTTGTACTTGTGTGCCTGGGACTAAAA
CGTGAATTGTTTGGTTTTGATCGGTGCCCGATATGGGACATAAGTATGTT
ACTCTTCTCCTTGTCGAAGTGAAGTACATGTTGGCGCTATATGTAAGGGT
GCGACCGACATGTAGGGTAAAAAAGATGATTTCTCGTGCTACGTTGCAGA
GAGGTCGCGCTTAAGTGGACACTATGATAATATTTTTCGACTCGCGTCTC
TCGCTTCTTGTTGAAACTATGATAGACACCATGACCGCTCTTTATTTTTG
TGATGGCTCACATCGACAGAGTTGCATACCACAAAGGAACTATAGAGGAC
GAAGGTCTGGTTGGTGGCCGGTGAACCAGCGCGGGCTGCATTGGTTGTAA
TTGTATCCAACTATGTCTTCGCAAAATGGCCTTTTCATGCTCCTCCCACG
CGGTCCGGTCTGGCGGAGCGAGGACGTGAAAAGCATGGTTGGCTTCATGG
ACGAATTCAATCGTCGGGCGGATGAGGCAGATAGTCTTCAATTACTGGAG
ACCTTCAATTTCATCGTTGAGGCAGTGGGCATCGACGCATGTGTTGAAGC
ACTTGATCAAGTCAAAAAACAGCAGCAAATCCAGCTAAGTCAGCAGGCCC
CTTTCCGGTGCGGCTCGAAAAGCACGTCAGCACCGAAAGAAGGGACGTCG
ATGGATGCAGTAGGTGGTCCACAAGCACATGAAGTGATGCAAAGCATCAC
GCACTCCCACGCGGGAGGCAAGGGCCAGGGTCCCCCCACTGCTGTTGCCG
CGTCGGAGGCGACAATGGCTACGAATGGTACTGGTGCCAATCACGAATGG
AGCGACGCGGGGGTGGTCGCAGCCACGGTTTTGCACACTGTCACACCCGG
TGAGAGTAAACCTCCGTGCTTGTCTATCTCGCAGCTCGACAAGGGCGCGG
CCTTGCCCGGCACCGCGACCCAACAAGGAGAGGCTAGCTCGTACATTGGA
AGCGAGTCTTCCACAGCAGCCACGGCCACTACCTCGGTCAGCTCTTCTCC
AAGTGCGGGCGACAGGCCCTTTCCTATGCTCCAACCGGCCACGCTGTCCT
GGGCAGGTGTCCCTCCCGTGCCCAGCTCGGTCTCCTCCCTCCCGGACTCG
GCCGCGCGAGTGCCGATGGACCCTGTCTCCTACCCTTTTGGGAGCGTGAC
GGGACAGCTGCCCTTCCATTCGGGAAGGAATGGGGGAGATGCTGTGGACG
AGATGGGGGCTGCGAGGTCAGAGCCGAGTCTATTCGGACAGCCCCCTCGA
CGCTCTCTCTCGACGTCTGTCCCCATAGAAGCAACGGCCTCCCAAGGCCT
GGTCAGCACGTTGGAGGAAGATGGATACATACCCACTCCGCGCAATGACG
GGCCTTGGCACTACTTGGGCACCTTGCCCGAGTCGAACGCATCTTCGACC
TCGGCCTCGGGGAGAAGAGGCACGGAGAAGCTGACCGGAGCCGGCTCGGG
TGCGCTGCCCAGCACCAACAGCGTCTCCAGTGCAGGAAGCGACGACGACG
GCAAGCACCGTCCTGCGGCCATGAACTTCGGGCGGTACGGAGACCACCTC
CCGTACAATGGGCGCAAAATATGTCGGGTCAAGAACTGCGACGGGAACCA
GCGGTGGCCTGACTACCTCTGTGGGCAGCATGGAGGAGGGCGATGTCGGT
GGGAGGGGTGCTCTTTGTTCCACCAAGGGATTAACAGCATGGGTCTGCTT
TTGTGCGGCAAGCACTGCAAGGCCGTGGGAGCCACGTATCGCCGCCCACG
GCCGGCTGCTCAGAAAACCGAGCGCGGGAACGGTGGAGGGTTCGGCAGCA
CGACTCGCAAGCGCCGATGAGGAAAAATGCCCAAACCACGTTTCTGTGCA
CAGGGTATGCAAAGAGGGGACGAGGAAGAAGTGAAATAGGGAAATCGTGA
GCTGCCAGATTGCCACTCCAATGGCAAGCAACATCTTGTAGATCCGTGTG
CCTGTGGTTTAGCTCGATGAATATGCATTTTGCAGAGGAATTTCTCTGTG
TCCGGCCCTCACTATTGAAATGGTCAATTTCTGGCATGGACTTTCGCGTG
AGAATTGCGAAGACTTGTCTGTCTTTGCGCTACGACGAACTCTGCCCGTC
AAATATTGGACCTTTGAAAAGAATAAATGTCAATACTTTTAAGAAACCAT
AGTCCTCCAGAATCCCCCTCTGAATGATATGTGATTGATCACGCCCCGTT
CAACTTTCTCAATCTCCCTTTTCCCGCATGAACAAGCGATCATTCAGAAA
CA

Coding sequence (CDS) from alignment at KK037252.1:172020..174471-

>rna9235 ID=rna9235|Name=rna9235|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at KK037252.1:172020..174471- (Nannochloropsis gaditana)
ATGTCTTCGCAAAATGGCCTTTTCATGCTCCTCCCACGCGGTCCGGTCTG
GCGGAGCGAGGACGTGAAAAGCATGGTTGGCTTCATGGACGAATTCAATC
GTCGGGCGGATGAGGCAGATAGTCTTCAATTACTGGAGACCTTCAATTTC
ATCGTTGAGGCAGTGGGCATCGACGCATGTGTTGAAGCACTTGATCAAGT
CAAAAAACAGCAGCAAATCCAGCTAAGTCAGCAGGCCCCTTTCCGGTGCG
GCTCGAAAAGCACGTCAGCACCGAAAGAAGGGACGTCGATGGATGCAGTA
GGTGGTCCACAAGCACATGAAGTGATGCAAAGCATCACGCACTCCCACGC
GGGAGGCAAGGGCCAGGGTCCCCCCACTGCTGTTGCCGCGTCGGAGGCGA
CAATGGCTACGAATGGTACTGGTGCCAATCACGAATGGAGCGACGCGGGG
GTGGTCGCAGCCACGGTTTTGCACACTGTCACACCCGGTGAGAGTAAACC
TCCGTGCTTGTCTATCTCGCAGCTCGACAAGGGCGCGGCCTTGCCCGGCA
CCGCGACCCAACAAGGAGAGGCTAGCTCGTACATTGGAAGCGAGTCTTCC
ACAGCAGCCACGGCCACTACCTCGGTCAGCTCTTCTCCAAGTGCGGGCGA
CAGGCCCTTTCCTATGCTCCAACCGGCCACGCTGTCCTGGGCAGGTGTCC
CTCCCGTGCCCAGCTCGGTCTCCTCCCTCCCGGACTCGGCCGCGCGAGTG
CCGATGGACCCTGTCTCCTACCCTTTTGGGAGCGTGACGGGACAGCTGCC
CTTCCATTCGGGAAGGAATGGGGGAGATGCTGTGGACGAGATGGGGGCTG
CGAGGTCAGAGCCGAGTCTATTCGGACAGCCCCCTCGACGCTCTCTCTCG
ACGTCTGTCCCCATAGAAGCAACGGCCTCCCAAGGCCTGGTCAGCACGTT
GGAGGAAGATGGATACATACCCACTCCGCGCAATGACGGGCCTTGGCACT
ACTTGGGCACCTTGCCCGAGTCGAACGCATCTTCGACCTCGGCCTCGGGG
AGAAGAGGCACGGAGAAGCTGACCGGAGCCGGCTCGGGTGCGCTGCCCAG
CACCAACAGCGTCTCCAGTGCAGGAAGCGACGACGACGGCAAGCACCGTC
CTGCGGCCATGAACTTCGGGCGGTACGGAGACCACCTCCCGTACAATGGG
CGCAAAATATGTCGGGTCAAGAACTGCGACGGGAACCAGCGGTGGCCTGA
CTACCTCTGTGGGCAGCATGGAGGAGGGCGATGTCGGTGGGAGGGGTGCT
CTTTGTTCCACCAAGGGATTAACAGCATGGGTCTGCTTTTGTGCGGCAAG
CACTGCAAGGCCGTGGGAGCCACGTATCGCCGCCCACGGCCGGCTGCTCA
GAAAACCGAGCGCGGGAACGGTGGAGGGTTCGGCAGCACGACTCGCAAGC
GCCGATGA

Synonyms

Publications