rna9231, rna9231 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9231
Unique Name	rna9231
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1760
Alignment location	KK037252.1:165526..167520 -

Link to JBrowse

Properties


Property Name	Value
Product	snRNA-activating protein complex, subunit 3
Orig transcript id	gnl\|cribi\|Naga_100019g41.467.mrna
Orig protein id	gnl\|cribi\|Naga_100019g41.467
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:165526..167520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g41	gene8953	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21445.1	cds9201	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9231	rna9231-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:165526..167520-
coding sequence from alignment at KK037252.1:165526..167520-

mRNA sequence

>rna9231 ID=rna9231|Name=rna9231|organism=Nannochloropsis gaditana|type=mRNA|length=1760bp
TATTCTATGTCCTTAACGAGAAATGTATATCAATTAGAGCGATTTCGTGC
CTTTGACGTGGACGATGAGGTGAAACAGGAGCCCTGACCCGCTTGGAAAG
CCCTTTGTCTCGGAACAAGTGGCATGGGGACCTGTCATCCGTTCTTGGAG
CCCTGTCTTCTTTCCTTTCTCCCCATCCGAAAAAAAGTTACTATGTTTAC
GAAACAAAATGTAACTCTCACTGGACGAGTGAGGCTTCAATCAGTGATTT
TTATGATAGAATGCTTCAATCATGTCGACGTTGATTTTTATGTATGCAAA
TGAGGCGGTATTCCTGACTACCGACGGTGATCACGTCGGGTTTCGACCAC
TTCTCATTTTCTCCCTTTCTTCTTTCTCCTTGAAAACCTAGCTCACCTTC
CTCGCTGTCAGCCATCTACAAAATTCGGGAATATGTCAGGTAAGTCCATG
GCTATTGGCCTGGCAGCTGGTTTCTTGTTGAGTGCCGCGCTGCTTTATCC
GAGAGTGCGGTCGAAGACAAGGACAAGCAAGACGGAACCCGATACAGACC
TGTCGTATCCATCCTCCCTACCGCCTGACGAGAAGGAGGCCTTCATTGAA
ATCTGCGATCAGCTTACAGTAGAGTTACTGACCGAACTTAAATCTCGGTA
TGAGTTGCCTGCCGAGGCCTCCGAATGGGTCAAAAAGATGATCGAATACA
ATGTCAAGGGTGGCAAACTCAATCGTGGCCTGACCGTGGTCTCCGTTAAA
CGCACCATCGACGCGGCGAAGGGCAGAGTCTTGTCAACCAGAGAATTTGC
TCGTGCAGCAGTACTAGGGTGGTGTATCGAGTGGTTGCAAGCCTTTTTCT
TGGTGGCGGACGACGTGATGGACGATTCTGTTACGCGACGTGGCCAACCG
TGCTGGTTCCGCTTGCCGCAAGTGAAACTGATCGCTGTGAACGACTCTTT
CATTCTCGAGTCTAACGTATTTCAAATCTTAAAGCGACACTTCGGTCACG
AGCCTTTCTACGTAACCCTTTTCGACCTTTTCCGCGAAGTGACCCTGCAG
ACTGAGCTGGGCCAGCTGCTCGACCTGACCTCGCAGCCCATGGATGGACA
GATCGATCTCCAGCGCTTTACTCCCCAGCGCTATCAGCTCATTGTCAAGT
ATAAGACCGCTTTCTATACTTTTTACCTGCCTATCGCCTGCGGCCTCATT
CTCTCGGGTATGGGGCATCCGGCTGCTCTAACCACGGCACGACGGGTATG
CGTGCTCATGGGCGAGTACTTTCAGGTGCAGGACGACTATTTGGATTGCT
ACGGGGACCCAAAGCTGATCGGCAAGGTGGGCACGGACATCCAAGATAAT
AAATGCTCCTGGCTGGTGGTGCAGGCGCTGGCCAAGGCCACACCTGCCCA
GCGTACGGTGCTGGAAGCGCACTACGGTAAGCACGAGGACTCGTCCGTAG
CCGCCGTGAAGACTCTGTACCGTGAGATGGGCCTTGAGGTTCTCTTCAAA
CAGTACGAGGAGCAGTCTTACACGGCAATTCAGAAAGAGCTTGATGCTCT
ACCAGCGGACATTCCGCGCCCAGTCTTCGAGCTTTTGCTGAAGAAAATCT
ACAGGCGCTCCAAATGAGAGGACTCGCGATTTCTCATCACCGTGGGGGCA
TGTCTGCAAGTATGTGCACGCAAGCACATCACTTTCATCAACCACACATG
CTTGGAATTATGCTTTATTGAAAAAACTAAAACTGCTCATAACTGAACAC
ACACGTTTTA

protein sequence of rna9231

>rna9231-protein ID=rna9231-protein|Name=rna9231|organism=Nannochloropsis gaditana|type=polypeptide|length=494bp
MSLFPRSLRTFASEFELWPLPADEEALALSARRPPGYFDCDDIALRTPQE
EVENGMVAALAHWADWEASHVSLASLEGQRVVRLPPGMRLREHDKEVDRD
ENRDSRTQSVQENMNERSPLSRNQGENGTPSAHHCGERVNGSIGSNLHVS
VEGPDELAMLDILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAG
MRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFG
NRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQA
GIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSI
MAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLG
ECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFC
ALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHDD

mRNA from alignment at KK037252.1:165526..167520-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9231 ID=rna9231|Name=rna9231|organism=Nannochloropsis gaditana|type=mRNA|length=1995bp|location=Sequence derived from alignment at KK037252.1:165526..167520- (Nannochloropsis gaditana)
TGTTGCGGGGGCTTGGTCGCCGGAGAGCTGAGACATCAGGCTTTTCTCGC
TTGGCGAGGCCTCAAGCCGCTGCACGTGGACGACATTCTCAATCCTTGCC
GGGACCCACGCCTGTGAAGTAGAGCGTTTATCGGCAAATATGTTGCTTTC
GACCGCGTACACGAGGCACAGTGTTCACAGGGCTCTTTGTCTACTCTCTT
CGATGCTCAAGTGCCCAACAGGCGACTCGACCGGGCGGCAAATCGACCTC
CGTGAGGTGGCAGGAACGTGTGGATCTGTCATTGTATGACCTGTATGCAA
GAGGCGCGATTCTCCATGGTTACCTGGGCCCAGCCACTTACACGGGCTTA
AAATGTCGTTATTTCCGCGGTCTCTTAGAACGTTTGCGAGCGAGTTCGAG
CTGTGGCCCTTGCCGGCGGACGAGGAGGCACTCGCTCTCTCTGCGCGTCG
GCCTCCCGGCTACTTTGACTGCGACGACATCGCTTTGCGTACACCACAAG
AGGAAGTCGAGAATGGTATGGTTGCGGCGCTAGCTCATTGGGCTGACTGG
GAAGCATCTCATGTGTCCCTTGCGTCGCTAGAAGGCCAGAGGGTAGTGCG
CCTACCGCCAGGGATGAGGCTGAGGGAGCACGACAAAGAGGTAGACAGGG
ACGAAAACCGTGACTCCAGGACGCAGAGCGTGCAGGAGAATATGAATGAA
AGGAGCCCTTTGTCTCGAAACCAAGGCGAAAACGGCACCCCATCAGCTCA
CCATTGCGGAGAGAGGGTGAACGGCAGCATAGGTAGCAACCTTCACGTGT
CAGTGGAAGGGCCTGACGAGCTGGCAATGTTGGATATATTAGATAAGGTC
CCTGATTTCAAACGAGTCGAGGCGGGACTCCGCTCTCGTATGGAGTCATC
GCAATTAGCCTTGGGTCGATGGCGTTTGGCGAACGAAAAATTTGGGGCTG
GTATGCGGGACTTTCGGCGGTTGCCCTTCTTGCGCAAGGCCGTCAATGTG
ATTCAGGCCCCGGCACACTCCAGCATGACCAGTAATGCAGCCTCCGAGGC
GGGGCAGCTGATGCAAGACGACGAAGCCTTGGTGACGGTCACCATTTTCG
GTAACCGCGCATCGATGCTGTACCGGCAAGAGGATTATCTCCTAAGGGCG
GGAAATACGCTCGGGGATCTGCATCGGGTCTTTTCCTGCTCCCTGGCCGC
GATGATGGCACAGGGTGATCAGGGAGACCGGTCATGGGATAGTCTCCAGG
CTGGCATTCCGGCTTTTTTCTTTATAGAGGGTAAGTTTTACGCGGCGATG
CAGCCGAGGGGGCACAAGAAAGGGGAAAGGGAGGAACAGACGGGTGTCGA
GCATGAAGAGGAAAGCCATGGGAGGACTGTTATTGAACACCTGCGGTCAA
TCATGGCCTGGACGGACGAGCCTGGCAAAAACCGACGGGAACAGCTTGGG
CTGGGCACGGAGGTGGACTGGGAGGTGCTAGACATGGACCGCGTCCGGCT
CTCGGACCTGACGTTGCGGATCGGCACCCGCTATCTCTATAGCCATCTGG
GAGAATGCGAGCACCATTTTAATATCTCCGACATACGCCTCCTGGGCCCT
CAGGATTCGCGCAATTGCCAAGACTACCCCGCGCTTGTCTTCCAAAAGCA
CTACAGGAGAAGGCGTTGCGCGGTTTGTGACGTCCGTCTTGGAAAATTCT
GTGCGCTGGGCGACCCTGTTGGAGATGATCACAGGATGATATACTGTGAA
TTCTGTCATTACCTCCTGCACTACGATGCAGAGGGACATTTGCTCCGAGA
CGACTTTGAGCTCTTTCCTTACATGCACGATGATTGAGACCGTGCTATGA
TGTGGAGACCGTAGGGTTTGGAAGAGTCAGTTTCCTACGTGTAAATTTTA
ATCAAGAAAGCATTTCTGCTGAAACGGAAAAATAAATCTTAATCAAAATC
AATTGTTTCTAGCAGATCGGCAGACGCAATCTAAAACGTGTGTGT

Coding sequence (CDS) from alignment at KK037252.1:165526..167520-

>rna9231 ID=rna9231|Name=rna9231|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at KK037252.1:165526..167520- (Nannochloropsis gaditana)
ATGTCGTTATTTCCGCGGTCTCTTAGAACGTTTGCGAGCGAGTTCGAGCT
GTGGCCCTTGCCGGCGGACGAGGAGGCACTCGCTCTCTCTGCGCGTCGGC
CTCCCGGCTACTTTGACTGCGACGACATCGCTTTGCGTACACCACAAGAG
GAAGTCGAGAATGGTATGGTTGCGGCGCTAGCTCATTGGGCTGACTGGGA
AGCATCTCATGTGTCCCTTGCGTCGCTAGAAGGCCAGAGGGTAGTGCGCC
TACCGCCAGGGATGAGGCTGAGGGAGCACGACAAAGAGGTAGACAGGGAC
GAAAACCGTGACTCCAGGACGCAGAGCGTGCAGGAGAATATGAATGAAAG
GAGCCCTTTGTCTCGAAACCAAGGCGAAAACGGCACCCCATCAGCTCACC
ATTGCGGAGAGAGGGTGAACGGCAGCATAGGTAGCAACCTTCACGTGTCA
GTGGAAGGGCCTGACGAGCTGGCAATGTTGGATATATTAGATAAGGTCCC
TGATTTCAAACGAGTCGAGGCGGGACTCCGCTCTCGTATGGAGTCATCGC
AATTAGCCTTGGGTCGATGGCGTTTGGCGAACGAAAAATTTGGGGCTGGT
ATGCGGGACTTTCGGCGGTTGCCCTTCTTGCGCAAGGCCGTCAATGTGAT
TCAGGCCCCGGCACACTCCAGCATGACCAGTAATGCAGCCTCCGAGGCGG
GGCAGCTGATGCAAGACGACGAAGCCTTGGTGACGGTCACCATTTTCGGT
AACCGCGCATCGATGCTGTACCGGCAAGAGGATTATCTCCTAAGGGCGGG
AAATACGCTCGGGGATCTGCATCGGGTCTTTTCCTGCTCCCTGGCCGCGA
TGATGGCACAGGGTGATCAGGGAGACCGGTCATGGGATAGTCTCCAGGCT
GGCATTCCGGCTTTTTTCTTTATAGAGGGTAAGTTTTACGCGGCGATGCA
GCCGAGGGGGCACAAGAAAGGGGAAAGGGAGGAACAGACGGGTGTCGAGC
ATGAAGAGGAAAGCCATGGGAGGACTGTTATTGAACACCTGCGGTCAATC
ATGGCCTGGACGGACGAGCCTGGCAAAAACCGACGGGAACAGCTTGGGCT
GGGCACGGAGGTGGACTGGGAGGTGCTAGACATGGACCGCGTCCGGCTCT
CGGACCTGACGTTGCGGATCGGCACCCGCTATCTCTATAGCCATCTGGGA
GAATGCGAGCACCATTTTAATATCTCCGACATACGCCTCCTGGGCCCTCA
GGATTCGCGCAATTGCCAAGACTACCCCGCGCTTGTCTTCCAAAAGCACT
ACAGGAGAAGGCGTTGCGCGGTTTGTGACGTCCGTCTTGGAAAATTCTGT
GCGCTGGGCGACCCTGTTGGAGATGATCACAGGATGATATACTGTGAATT
CTGTCATTACCTCCTGCACTACGATGCAGAGGGACATTTGCTCCGAGACG
ACTTTGAGCTCTTTCCTTACATGCACGATGATTGA

Synonyms

Publications