EWM21445.1, cds9201 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|585101675|gb|EWM21445.1| (snRNA-activating protein complex, subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 1023.46 bits (2645), Expect = 0.000e+0 Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 0 Query: 1 MSLFPRSLRTFASEFELWPLPADEEALALSARRPPGYFDCDDIALRTPQEEVENGMVAALAHWADWEASHVSLASLEGQRVVRLPPGMRLREHDKEVDRDENRDSRTQSVQENMNERSPLSRNQGENGTPSAHHCGERVNGSIGSNLHVSVEGPDELAMLDILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHDD 494 MSLFPRSLRTFASEFELWPLPADEEALALSARRPPGYFDCDDIALRTPQEEVENGMVAALAHWADWEASHVSLASLEGQRVVRLPPGMRLREHDKEVDRDENRDSRTQSVQENMNERSPLSRNQGENGTPSAHHCGERVNGSIGSNLHVSVEGPDELAMLDILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHDD Sbjct: 1 MSLFPRSLRTFASEFELWPLPADEEALALSARRPPGYFDCDDIALRTPQEEVENGMVAALAHWADWEASHVSLASLEGQRVVRLPPGMRLREHDKEVDRDENRDSRTQSVQENMNERSPLSRNQGENGTPSAHHCGERVNGSIGSNLHVSVEGPDELAMLDILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHDD 494
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|66821077|ref|XP_644064.1| (hypothetical protein DDB_G0274687 [Dictyostelium discoideum AX4] >gi|60472283|gb|EAL70236.1| hypothetical protein DDB_G0274687 [Dictyostelium discoideum AX4]) HSP 1 Score: 119.398 bits (298), Expect = 8.017e-25 Identity = 59/190 (31.05%), Postives = 89/190 (46.84%), Query Frame = 0 Query: 304 AFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHD 493 FFFI FY + +R Q + ++ +AW E GK+ +++ MD V +DL + IG RYLY H G CEH +R++ D YP + +Q+ RRR+C VCD+ K+ LGD D+ YC+ C+ HY +GHLL ++++FPY H+ Sbjct: 846 GFFFINNVFY------NDNRDQRNYQ----------------YSKNTLAWLKERGKDIS---------NFKEESMDDVTFNDLEISIGERYLYCHQGSCEHLVTFESLRMVNEMDDLEPSRYPIITYQQKVRRRKCLVCDIYAAKYVTLGDQFADETPFFYCDECYRTFHYSKDGHLLYSNYQVFPYYHE 1004
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|1183375866|gb|ORY01467.1| (hypothetical protein K493DRAFT_209622 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 112.464 bits (280), Expect = 8.419e-25 Identity = 71/262 (27.10%), Postives = 125/262 (47.71%), Query Frame = 0 Query: 233 AGQLMQDDEALVTVTIF-GNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHD 493 A L+ D E +++V + N+A+ R +++L+ + L L F C + + D+ + S + ++F IE FY M+ + +++ + I+ W +E R +Q G + ++ M V+ SDL++RI YL++H G+C+H F DIRLL D RN YP +FQ R +C +C + ++ + D + +CE C+ HYD++G LL ++++FPY HD Sbjct: 2 AVDLITDTEVVLSVAFYHKNKATT--RMQEFLVLSSQPLTVLRDAFYCLSDFLTVENDEEVVNTQSKKVS-SSYFLIENTFYNDMR----------------------SASAVDYSKVILDWVEE--NERYQQPG---QAKYKKRVMGEVKFSDLSIRINQPYLFTHQGDCQHIFKFRDIRLLTKSDDRNRNAYPKPIFQCKITRHKCRMCYMYPAEYVTINDFHSGETPCYFCEHCYEPFHYDSQGRLLY-EYQVFPYAHD 232
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|1183344956|gb|ORX73822.1| (hypothetical protein DL89DRAFT_4486 [Linderina pennispora]) HSP 1 Score: 115.546 bits (288), Expect = 9.786e-24 Identity = 72/263 (27.38%), Postives = 123/263 (46.77%), Query Frame = 0 Query: 232 EAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWTDEPGK--NRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMH 492 EA Q+ DDE +++V +F R + E+YL+ TL L F C +++Q D+ + + + ++FFIE FY M+ ++ R IM W ++P + N + GL + + MD R DL++R+ Y++ H G+CEH +D+RLLGP D ++ + YP VF+ + R +C +C ++ D +CE C+ H+D +G L+ + E+FPY + Sbjct: 476 EATQVA-DDEVILSVCLFNPRTPTA-KMEEYLVLGSQTLTVLRDAFYCISDFLVSQRDETNVNTKDKKVS-SSYFFIENTFYNDMR----------------------SPLATDYSRVIMEWANDPERQENNPKLQGLQSRL------MDGARFQDLSIRLKYPYIFMHQGDCEHVLMFTDLRLLGPNDDQHVESYPKQVFRTRHMRHKCRMCSAYPAQYVTKSDFHSGMSPCYFCEKCYTPFHFDHDGKLML-EHEVFPYAN 706
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|449670439|ref|XP_002161146.2| (PREDICTED: snRNA-activating protein complex subunit 3-like [Hydra vulgaris]) HSP 1 Score: 111.309 bits (277), Expect = 3.022e-23 Identity = 77/268 (28.73%), Postives = 124/268 (46.27%), Query Frame = 0 Query: 232 EAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDS-LQAGIP-------AFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYM 491 E + + +DE L+ V+++ ++ ++ QE Y+L L L V C+ ++ GD S + L P AFFFIE FY ++ ++ + I+ W + + LGL T M+ SDL +R+G YLY H G CEH +D+R++ D + Q YP V+Q Y+RR+C+VC++ K+ L DP+ D+ ++CE C LHY +G L DF+ FP++ Sbjct: 134 ETSEKIPNDEVLLAVSVYHSQKRKVF-QEFYVL-PNQKLSALRDVIVCTSDNIIY----GDFSKNPDLSCAKPVKEFCQSAFFFIEKCFY----------------------NDTRNPLNRDYSKIIIEWAKDEERYTVNGLGLFTSAI-----MENTTFSDLKIRLGYPYLYCHQGNCEHLIVFNDMRMVSKDDPQALQSYPFKVYQAPYKRRKCSVCNIHYAKWRTLNDPLAFDNPSLFCERCFKYLHYTQDGKPLC-DFKAFPHV 367
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|659118391|ref|XP_008459095.1| (PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo] >gi|659118393|ref|XP_008459096.1| PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo]) HSP 1 Score: 112.464 bits (280), Expect = 4.180e-23 Identity = 105/435 (24.14%), Postives = 181/435 (41.61%), Query Frame = 0 Query: 94 DKEVDRDENRDSRTQSVQENMNE---RSPLSRNQGENGTPSAHHCGERVNG-----SIGSNLHVSVEG-------PDELAMLD--ILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAW---TDEPGKNRREQLGLG-----TEVDWEVLD----------MDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHD 493 ++ + DEN +++++ +ENMN RS + + NG C E VNG SN + S +EL++++ + KV + +++ + QL +W+ + + RL LR + P S+ M ++ V ++ M+ QE +L TL +L CS +M + +Q D S +F +E F ++ + I++ + I+ W +++ + + E + G V EV D M +VR DL R+G YLY H G+C+H I D+RL+ P+D + YP + FQ R ++C VC++ K L D ++ +CE C++LLHY EG+LL +DF + Y+ D Sbjct: 89 EESLQSDENANNQSELPEENMNAGLLRSLILLRK--NGI--LRECEEEVNGHNLEADPASNANRSTNKMTTRKRKKEELSIIEEKSIAKVAEIAKLKQKQEADRAVVQLHAFKWK--KDIASSSSESKERLKSLRSTNTSAKVPHVKSLNDGKHESLHHPM----TVLFVEVYHKSRKMVKSQE-FLALGRQTLAELKDKIYCSTDTLMQKAEQQDSS---------GYFLVEDVFCNDLR----------------------NPSAIDYSKPILDWLRNSEDEARKKWECIITGELQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 481
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|659118389|ref|XP_008459094.1| (PREDICTED: snRNA-activating protein complex subunit-like isoform X2 [Cucumis melo]) HSP 1 Score: 112.079 bits (279), Expect = 6.153e-23 Identity = 103/432 (23.84%), Postives = 178/432 (41.20%), Query Frame = 0 Query: 94 DKEVDRDENRDSRTQSVQENMNERSPLSRNQGENGTPSAHHCGERVNG-----SIGSNLHVSVEG-------PDELAMLD--ILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAW---TDEPGKNRREQLGLG-----TEVDWEVLD----------MDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHD 493 ++ + DEN +++++ +ENMN + L R C E VNG SN + S +EL++++ + KV + +++ + QL +W+ + + RL LR + P S+ M ++ V ++ M+ QE +L TL +L CS +M + +Q D S +F +E F ++ + I++ + I+ W +++ + + E + G V EV D M +VR DL R+G YLY H G+C+H I D+RL+ P+D + YP + FQ R ++C VC++ K L D ++ +CE C++LLHY EG+LL +DF + Y+ D Sbjct: 114 EESLQSDENANNQSELPEENMN--AGLLR-----------ECEEEVNGHNLEADPASNANRSTNKMTTRKRKKEELSIIEEKSIAKVAEIAKLKQKQEADRAVVQLHAFKWK--KDIASSSSESKERLKSLRSTNTSAKVPHVKSLNDGKHESLHHPM----TVLFVEVYHKSRKMVKSQE-FLALGRQTLAELKDKIYCSTDTLMQKAEQQDSS---------GYFLVEDVFCNDLR----------------------NPSAIDYSKPILDWLRNSEDEARKKWECIITGELQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 494
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|659118387|ref|XP_008459093.1| (PREDICTED: snRNA-activating protein complex subunit-like isoform X1 [Cucumis melo]) HSP 1 Score: 112.079 bits (279), Expect = 6.301e-23 Identity = 105/435 (24.14%), Postives = 181/435 (41.61%), Query Frame = 0 Query: 94 DKEVDRDENRDSRTQSVQENMNE---RSPLSRNQGENGTPSAHHCGERVNG-----SIGSNLHVSVEG-------PDELAMLD--ILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAW---TDEPGKNRREQLGLG-----TEVDWEVLD----------MDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHD 493 ++ + DEN +++++ +ENMN RS + + NG C E VNG SN + S +EL++++ + KV + +++ + QL +W+ + + RL LR + P S+ M ++ V ++ M+ QE +L TL +L CS +M + +Q D S +F +E F ++ + I++ + I+ W +++ + + E + G V EV D M +VR DL R+G YLY H G+C+H I D+RL+ P+D + YP + FQ R ++C VC++ K L D ++ +CE C++LLHY EG+LL +DF + Y+ D Sbjct: 114 EESLQSDENANNQSELPEENMNAGLLRSLILLRK--NGI--LRECEEEVNGHNLEADPASNANRSTNKMTTRKRKKEELSIIEEKSIAKVAEIAKLKQKQEADRAVVQLHAFKWK--KDIASSSSESKERLKSLRSTNTSAKVPHVKSLNDGKHESLHHPM----TVLFVEVYHKSRKMVKSQE-FLALGRQTLAELKDKIYCSTDTLMQKAEQQDSS---------GYFLVEDVFCNDLR----------------------NPSAIDYSKPILDWLRNSEDEARKKWECIITGELQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 506
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|1035411546|ref|XP_016901523.1| (PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo] >gi|1035411548|ref|XP_016901524.1| PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo]) HSP 1 Score: 111.694 bits (278), Expect = 1.011e-22 Identity = 102/432 (23.61%), Postives = 182/432 (42.13%), Query Frame = 0 Query: 94 DKEVDRDENRDSRTQSVQENMNERSPLSRNQGENGTPSAHHCGERVNG-----SIGSNLHVSVEG-------PDELAMLD--ILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGEREEQTGVEHEEESHGRTVIEHLRSIMAWT----DE---------PGKNRREQLGLGTEVDWEV-----LDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHD 493 ++ + D N +++++ +ENMN + L R C E VNG SN + S +EL++++ + KV + +++ + QL +W+ + + RL LR + + P S++ E + + ++ V ++ M+ QE +L TL +L CS A+M + + D S +F +E F ++ + I++ + I+ W DE G+++++ +G D V + M +VR DL R+G YLY H G+C+H I D+RL+ P+D + YP + FQ R ++C VC++ K L D ++ +CE C++LLHY EG+LL +DF + Y+ D Sbjct: 114 EESLQSDGNANNQSELPEENMN--AGLLRE-----------CEEEVNGHNLEADPASNANRSTNKMTTRKRKKEELSIIEEKSIAKVAEIVKLKQKQEADRAVVQLHAFKWK--KDIASSSSESKERLKSLRSTNSSAKVPHVKSLSG----EKHESLHHPTTVLFVEVYHKSRKMVKSQE-FLALGRQTLAELKDKIYCSTDALMQKAELQDSS---------GYFLVEDVFCNDLR----------------------NPSAIDYSKPILDWLRNSEDEARKKWECIITGESQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 494
BLAST of EWM21445.1 vs. NCBI_GenBank
Match: gi|661894510|emb|CDP01509.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 110.538 bits (275), Expect = 1.606e-22 Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = 0 Query: 339 HGRTV-IEHLRSIMAWTDEPGKNRREQLGLGTEVD---WEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHD 493 H R V +E I+A + + R+ L ++ ++V+DM + R DL R+G YLY H G+C+H I D+RL+ P+D +N YP + FQ R R+C+VC++ + D ++ +CE C+Y+LHY A+G LL DF ++ Y+H+ Sbjct: 310 HSRNVALEKWEFIVAGEQQQHQKRKAFLDSNEKLQLPHFKVVDMQKTRFCDLGFRLGAGYLYCHQGDCKHLIVIRDMRLIHPEDVQNRAAYPLITFQSKVRFRKCSVCNIYKATKVTVDDKWAQENPCYFCELCYYMLHY-ADGSLLYSDFSVYDYLHE 467 The following BLAST results are available for this feature:
BLAST of EWM21445.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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