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Properties
| Property Name | Value |
|---|
| Product | MD-2-related lipid-recognition protein |
| Orig transcript id | gnl|cribi|Naga_100019g48.491.mrna |
| Orig protein id | gnl|cribi|Naga_100019g48.491 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:135375..138747 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9223 ID=rna9223|Name=rna9223|organism=Nannochloropsis gaditana|type=mRNA|length=2333bp
TGTTCCATGGAAAATAAATACTCCACGTTTCCTGATCGCTCAAATTCTTA
TCATCGAAGCAAGCTGTTAGCCAGCTTGTCGCGACCCGTTGAGGAGTGCT
TCACAGTTGATCATGTGCTCTTTTGACATTGTGCGCATATGCAGGGACAG
CATTCAAACGAGGGAAAAATTACCTGCACGAATCGGAAATATCGGTGGCT
GAGGGCATGGGGTGCCTTTATTCAAGCCCTGCCGGCGTACCTCACACCTA
TCGCGAATCAGACATGGAAAAATCAGCGCACGTTCGGAGGAAAACGCAAC
ACTTAATCCAAAATCTGGTGCACGAGGAGTACAGACTGAAAGTTGACGAG
GTCTATGATGTTGGTAAAGGCAAAATTTTGGGGACAGGGATCAGCGGAAT
GGTCCGGGTTGTGCGGCACCTGACAACTGGCAACACTTACGCCATGAAGA
CGCTGCACTTGAATCGGCTGAAATCCAAGGCCTCTTTGGCAGACCTGCGG
AACGAAGTTCGCATTATGAGCGAGCTCGATCATCCAAATATCGTGCAGCT
CTACGAGACCTTTGAGACGGATGACCATATTTTTCTCATTATGGAGCTCT
GCACAGGGGGCGAGCTTCTAGACAAATTGCACCGACAGGAGGGTCATCAT
TATTCGGAACAGATTGCCTCTCAGCTCGTTAAGAAGATGGTGGGTGCAAT
CCGCTACTGCCACGATCATCACATTGCTCACAGAGACTTAAAACTCGAGA
ATTTTTTATTCGAAAACGAGGGTGCAGATGCCGAGCTCAAGCTCATTGAT
TTTGGCCTATCGCGTCACTATCGCGACGACCAGCGCATGCATCGGCCTGT
GGGCACGCCTTACTACGTGGACCCCTCCGTGCTGGAGGGATCATACACGC
AGGAGTGCGACATGTGGTCTATCGGCGTCATCGCGTACATGCTCTTGAGC
GGCCGTCCGCCGTTCTACGGTGACACAGATAATGAAACCTTGATACGCGT
GCGAGCAGGCAAATTTAGCTTTCCACCGTCTGCTTTCCATCAGGTGTCAG
CGCAGGCCAAAGACTTCATATCGAGACTGCTCGTTGTGGATCACACGCGA
CGCATGACGGCGCGGCAGGCACAGGCACACCCATGGCTGCATTCGTGGGA
CCAATCGCCTGAGCCTTTGCATGTTGATATTCTGGGTTCCCTCCGCAACT
TCCACGAATTTAGCACGCTCAAGAAGGTGGCTATGGAGGTGGTAGCTTTC
AGCCTACGGTCCGAGCAGATCAAGGATCTGCGCCGAGAGTTCGAGAAGGT
GGACCTTGATAGCAACGGAGAGATCACCCTAGAGGAGCTGTCACAAGCAC
TTGAAGCGTCAGGCCTCCTCAGTCCTGGTGACTTGGAGACCCTGGTGCAG
GGGTTAGACGTCGCGCATCAGCACGCGGGCACAATATCTTGGCACGAGTT
CTTGGCGGCTACGATGGATGCTGCGCTCCTGGATGAGGAGCATATCCAGC
TTGCTTTTCAGCGCATTGACTCAGATCGCACGGGTTACATATCCCAAAGC
AACTTTGGCGAGCTTGTGGGCGCAGACATGACAATCGAGCAAGTGCAGGA
AGTCTTCGCCGAGGTTGACACGGACGGAGACGGCAAGATAAGCTATGAGG
AGTTTGTTTCCCTTATGAAGGGTACACCGCCCGCGCCTACAAACACGATG
GCCTCTGGCCATGCTTTGGTGGACAAGGCCTTTAGCAAAAGAAACTTGCG
GCACCAACGCCACCGATCGATCCACGCCGCTTCCGAGTCATCCATCACGA
CTTCACATTCAAATTCGGGCTCATCCAACACTCTATCCGTCTCCTCGCCT
GGCTGTCGTCACAGACGCCTCCACAGACTTCGGCATTCTATCCAGCACTT
GGTAGATGTAGCAACAAACTCTCCCACCCGGCAGGCTCACGCAGCCTCCC
ATCCTTGATGAAAAACACAACACGTATGGCATTCGGGGAAATGTGAACAA
AGGAATCCCAGTGCCGCTTCGATATACTTACAAGTTTTGTCAGTACACGT
ACGTTTCACACGAATAAAGTAGCAAGTAGTGTGATATCTCCGAGTGACTG
AATAATAAAGAATGAAATATGTAATATATATATATATATATGAAATTGTA
AAAAAAATCATGATGATCGGAGTAGCATGGAGGGGGATACATTTTTTCTC
TTAGCGATAAACCCATGAAAGAAGATTAGACTCTAGGGGACATCTTGGAT
GCGAACCTGCCTCCTGCAAGCGTCTGAATTTACCAATCACCAATTTGAAG
CATGAAATGTAGGTGTTCATTCATTCTCTCGCA back to topprotein sequence of rna9223 >rna9223-protein ID=rna9223-protein|Name=rna9223|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MKQHDTHLLLSLFRTSLTRLVHRSGVMEPGGAGLLRESTRPFLIFSGIHI
SVVLILVLYAAAIPSSGALVTSIPHQPCNNHVESKAAITIHTVRGDLPVR
AGQIFVVEVYATPSAVLDGGKITMVVKAMGVTVSSRAFGICEDIDLTCPV
APEQSVRALFRFPVPWYAITMRADVVITATDTEGSPLACVEAPQIPVVRK
GHIEPVLSGADEFLGAPSRHCAGYDGGGGDCMCSASSPFHDDANRCHHLW
VGKQWCLRWHDAFADLLLSL back to topmRNA from alignment at KK037252.1:135375..138747- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9223 ID=rna9223|Name=rna9223|organism=Nannochloropsis gaditana|type=mRNA|length=3373bp|location=Sequence derived from alignment at KK037252.1:135375..138747- (Nannochloropsis gaditana)
AATTAGTGGCTCATTATGGCATAAGACGTTTTAGATGAATGACACTCCAC
GTAGTTGACATTGTGATTGAATTTTTATCTTGACCGTTCTTCACATTGAT
GAAGCAGCATGACACTCATTTGCTACTCTCCCTCTTCAGAACGTCGCTGA
CCCGACTTGTACATCGTTCAGGTGTAATGGAGCCTGGCGGGGCAGGATTA
CTTCGTGAAAGTACAAGACCCTTCCTGATTTTCTCAGGCATCCATATTTC
CGTCGTTTTGATTCTCGTCCTTTATGCCGCCGCTATTCCATCCTCTGGAG
CACTTGTCACCTCCATCCCGCACCAGCCATGCAACAATCATGTGGAATCG
AAGGCGGCCATCACAATCCATACAGTTCGAGGTAGGATTTCACGTTGCAT
ATTCGTTAATATGTCCCTTTCTTATTGGTCGATCGGTCGCAAACTTTCCG
CTCATTTCATTTTGAAATCTAGGAGACCTTCCAGTGCGAGCCGGTCAAAT
CTTTGTTGTGGAGGTATATGCGACACCCAGTGCTGTACTGGATGGTGGAA
AAATTACCATGGTTGTCAAGGCGATGGGAGTGACTGTCTCTTCTCGTGCT
TTTGGCATTTGTGAAGATATAGACCTTACGTGTCCTGTAGCACCAGAACA
GAGCGTCAGGGCGCTGTTCCGTTTTCCCGTGCCATGGTACGCGATCACGA
TGCGGGCGGATGTAGTGATTACGGCTACGGACACCGAGGGCTCACCGCTC
GCTTGCGTGGAGGCCCCACAGATCCCCGTCGTGCGCAAAGGCCACATAGA
GCCCGTGCTTTCAGGAGCAGACGAATTCCTTGGCGCGCCCAGCCGTCACT
GCGCGGGTTATGATGGAGGCGGAGGTGATTGTATGTGCAGCGCCTCAAGC
CCCTTTCACGATGATGCAAATCGCTGCCATCATCTGTGGGTAGGTAAGCA
GTGGTGCCTGAGGTGGCACGATGCGTTCGCCGACCTTCTCCTTTCCTTGT
AAATAACGTTACATCGCGTGGCTCTTTTCTATCTTCTTCTCCTGCGAGAG
AATGAATGAACACCTACATTTCATGCTTCAAATTGGTGATTGGTAAATTC
AGACGCTTGCAGGAGGCAGGTTCGCATCCAAGATGTCCCCTAGAGTCTAA
TCTTCTTTCATGGGTTTATCGCTAAGAGAAAAAATGTATCCCCCTCCATG
CTACTCCGATCATCATGATTTTTTTTACAATTTCATATATATATATATAT
ATTACATATTTCATTCTTTATTATTCAGTCACTCGGAGATATCACACTAC
TTGCTACTTTATTCGTGTGAAACGTACGTGTACTGACAAAACTTGTAAGT
ATATCGAAGCGGCACTGGGATTCCTTTGTTCACATTTCCCCGAATGCCAT
ACGTGTTGTGTTTTTCATCAAGGATGGGAGGCTGCGTGAGCCTGCCGGGT
GGGAGAGTTTGTTGCTACATCTACCAAGTGCTGGATAGAATGCCGAAGTC
TGTGGAGGCGTCTGTGACGACAGCCAGGCGAGGAGACGGATAGAGTGTTG
GATGAGCCCGAATTTGAATGTGAAGTCGTGATGGATGACTCGGAAGCGGC
GTGGATCGATCGGTGGCGTTGGTGCCGCAAGTTTCTTTTGCTAAAGGCCT
TGTCCACCAAAGCATGGCCAGAGGCCATCGTGTTTGTAGGCGCGGGCGGT
GTACCCTTCATAAGGGAAACAAACTCCTCATAGCTTATCTTGCCGTCTCC
GTCCGTGTCAACCTCGGCGAAGACTTCCTGCACTTGCTCGATTGTCATGT
CTGCGCCCACAAGCTCGCCAAAGTTGCTTTGGGATATGTAACCCGTGCGA
TCTGAGTCAATGCGCTGAAAAGCAAGCTGGATATGCTCCTCATCCAGGAG
CGCAGCATCCATCGTAGCCGCCAAGAACTCGTGCCAAGATATTGTGCCCG
CGTGCTGATGCGCGACGTCTAACCCCTGCACCAGGGTCTCCAAGTCACCA
GGACTGAGGAGGCCTGACGCTTCAAGTGCTTGTGACAGCTCCTCTAGGGT
GATCTCTCCGTTGCTATCAAGGTCCACCTTCTCGAACTCTCGGCGCAGAT
CCTTGATCTGCTCGGACCGTAGGCTGAAAGCTACCACCTCCATAGCCACC
TTCTTGAGCGTGCTAAATTCGTGGAAGTTGCGGAGGGAACCCAGAATATC
AACATGCAAAGGCTCAGGCGATTGGTCCCACGAATGCAGCCATGGGTGTG
CCTGTGCCTGCCGCGCCGTCATGCGTCGCGTGTGATCCACAACGAGCAGT
CTCGATATGAAGTCTTTGGCCTGCGCTGACACCTGATGGAAAGCAGACGG
TGGAAAGCTAAATTTGCCTGCTCGCACGCGTATCAAGGTTTCATTATCTG
TGTCACCGTAGAACGGCGGACGGCCGCTCAAGAGCATGTACGCGATGACG
CCGATAGACCACATGTCGCACTCCTGCGTGTATGATCCCTCCAGCACGGA
GGGGTCCACGTAGTAAGGCGTGCCCACAGGCCGATGCATGCGCTGGTCGT
CGCTGAAGAGCAATAAGAGGAAATGCGAGTGAGTGAACAATTACTTCGAC
ACGACTAGCGTGTGACATCCTAGCGAACATCTTCCTGCGAAGTCAATGCA
AATTCGAGAACTGTTGGTAGTGCCACCAGGAAAGTGGACACTGCCTTTTA
CTGTCTTCACCGCAGGAATATAATGATGGCTTACCGATAGTGACGCGATA
GGCCAAAATCAATGAGCTTGAGCTCGGCATCTGCACCCTCGTTTTCGAAT
AAAAAATTCTCGAGTTTTAAGTCTCTGTGAGCAATGTGATGATCGTGGCA
GTAGCGGATTGCACCCACCATCTTCTTAACGAGCTGAGAGGCAATCTGTT
CCGAATAATGATGACCCTCCTGTCGGTGCAATTTGTCTAGAAGCTCGCCC
CCTGTGCAGAGCTCCATAATGAGAAAAATATGGTCATCCGTCTCAAAGGT
CTCGTAGAGCTGCACGATATTTGGATGATCGAGCTCGCTCATAATGCGAA
CTTCGTTCCGCAGGTCTGCCAAAGAGGCCTTGGATTTCAGCCGATTCAAG
TGCAGCGTCTTCATGGCGTAAGTGTTGCCAGTTGTCAGGTGCCGCACAAC
CCGGACCATTCCGCTGATCCCTGTCCCCAAAATTTTGCCTTTACCAACAT
CATAGACCTGTAATCGTTGAGTCGTGTTGATTTTACAGAGTTAACTGGGA
AATTTTCGGAAAACGGTACAATTCGAAGAAGTATCTGTCTTGCTTAGAAA
AGCATCATCCCACAGGAGACCCTTATTTGATTTCCCGTCTTTGACGCATG
AAAAAGTCGCAAGAAATTGAATC back to topCoding sequence (CDS) from alignment at KK037252.1:135375..138747- >rna9223 ID=rna9223|Name=rna9223|organism=Nannochloropsis gaditana|type=CDS|length=1626bp|location=Sequence derived from alignment at KK037252.1:135375..138747- (Nannochloropsis gaditana)
GAGACCTTCCAGTGCGAGCCGGTCAAATCTTTGTTGTGGAGGTATATGCG
ACACCCAGTGCTGTACTGGATGGTGGAAAAATTACCATGGTTGTCAAGGC
GATGGGAGTGACTGTCTCTTCTCGTGCTTTTGGCATTTGTGAAGATATAG
ACCTTACGTGTCCTGTAGCACCAGAACAGAGCGTCAGGGCGCTGTTCCGT
TTTCCCGTGCCATGGTACGCGATCACGATGCGGGCGGATGTAGTGATTAC
GGCTACGGACACCGAGGGCTCACCGCTCGCTTGCGTGGAGGCCCCACAGA
TCCCCGTCGTGCGCAAAGGCCACATAGAGCCCGTGCTTTCAGGAGCAGAC
GAATTCCTTGGCGCGCCCAGCCGTCACTGCGCGGGTTATGATGGAGGCGG
AGGTGATTGTATGTGCAGCGCCTCAAGCCCCTTTCACGATGATGCAAATC
GCTGCCATCATCTGTGGGTAGGTAAGCAGTGGTGCCTGAGGTGGCACGAT
GCGTTCGCCGACCTTCTCCTTTCCTTGTAAATGAAGCAGCATGACACTCA
TTTGCTACTCTCCCTCTTCAGAACGTCGCTGACCCGACTTGTACATCGTT
CAGGTGTAATGGAGCCTGGCGGGGCAGGATTACTTCGTGAAAGTACAAGA
CCCTTCCTGATTTTCTCAGGCATCCATATTTCCGTCGTTTTGATTCTCGT
CCTTTATGCCGCCGCTATTCCATCCTCTGGAGCACTTGTCACCTCCATCC
CGCACCAGCCATGCAACAATCATGTGGAATCGAAGGCGGCCATCACAATC
CATACAGTTCGAGGAGACCTTCCAGTGCGAGCCGGTCAAATCTTTGTTGT
GGAGGTATATGCGACACCCAGTGCTGTACTGGATGGTGGAAAAATTACCA
TGGTTGTCAAGGCGATGGGAGTGACTGTCTCTTCTCGTGCTTTTGGCATT
TGTGAAGATATAGACCTTACGTGTCCTGTAGCACCAGAACAGAGCGTCAG
GGCGCTGTTCCGTTTTCCCGTGCCATGGTACGCGATCACGATGCGGGCGG
ATGTAGTGATTACGGCTACGGACACCGAGGGCTCACCGCTCGCTTGCGTG
GAGGCCCCACAGATCCCCGTCGTGCGCAAAGGCCACATAGAGCCCGTGCT
TTCAGGAGCAGACGAATTCCTTGGCGCGCCCAGCCGTCACTGCGCGGGTT
ATGATGGAGGCGGAGGTGATTGTATGTGCAGCGCCTCAAGCCCCTTTCAC
GATGATGCAAATCGCTGCCATCATCTGTGGGTAGGTAAGCAGTGGTGCCT
GAGGTGGCACGATGCGTTCGCCGACCTTCTCCTTTCCTTGTAAATGAAGC
AGCATGACACTCATTTGCTACTCTCCCTCTTCAGAACGTCGCTGACCCGA
CTTGTACATCGTTCAGGTGTAATGGAGCCTGGCGGGGCAGGATTACTTCG
TGAAAGTACAAGACCCTTCCTGATTTTCTCAGGCATCCATATTTCCGTCG
TTTTGATTCTCGTCCTTTATGCCGCCGCTATTCCATCCTCTGGAGCACTT
GTCACCTCCATCCCGCACCAGCCATGCAACAATCATGTGGAATCGAAGGC
GGCCATCACAATCCATACAGTTCGAG back to top
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