EWM21469.1, cds9193 (CDS) Nannochloropsis gaditana

Overview
NameEWM21469.1
Unique Namecds9193
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:138367..138649 -
Alignment locationKK037252.1:137746..138275 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21469.1
ProductMD-2-related lipid-recognition protein
Orig transcript idgnl|cribi|Naga_100019g48.491.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:138367..138649 -
KK037252.1supercontigKK037252.1:137746..138275 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR003172ML_dom
Homology
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BLAST of EWM21469.1 vs. NCBI_GenBank
Match: gi|585101699|gb|EWM21469.1| (MD-2-related lipid-recognition protein [Nannochloropsis gaditana])

HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0 
Query:    1 MKQHDTHLLLSLFRTSLTRLVHRSGVMEPGGAGLLRESTRPFLIFSGIHISVVLILVLYAAAIPSSGALVTSIPHQPCNNHVESKAAITIHTVRGDLPVRAGQIFVVEVYATPSAVLDGGKITMVVKAMGVTVSSRAFGICEDIDLTCPVAPEQSVRALFRFPVPWYAITMRADVVITATDTEGSPLACVEAPQIPVVRKGHIEPVLSGADEFLGAPSRHCAGYDGGGGDCMCSASSPFHDDANRCHHLWVGKQWCLRWHDAFADLLLSL 270
            MKQHDTHLLLSLFRTSLTRLVHRSGVMEPGGAGLLRESTRPFLIFSGIHISVVLILVLYAAAIPSSGALVTSIPHQPCNNHVESKAAITIHTVRGDLPVRAGQIFVVEVYATPSAVLDGGKITMVVKAMGVTVSSRAFGICEDIDLTCPVAPEQSVRALFRFPVPWYAITMRADVVITATDTEGSPLACVEAPQIPVVRKGHIEPVLSGADEFLGAPSRHCAGYDGGGGDCMCSASSPFHDDANRCHHLWVGKQWCLRWHDAFADLLLSL
Sbjct:    1 MKQHDTHLLLSLFRTSLTRLVHRSGVMEPGGAGLLRESTRPFLIFSGIHISVVLILVLYAAAIPSSGALVTSIPHQPCNNHVESKAAITIHTVRGDLPVRAGQIFVVEVYATPSAVLDGGKITMVVKAMGVTVSSRAFGICEDIDLTCPVAPEQSVRALFRFPVPWYAITMRADVVITATDTEGSPLACVEAPQIPVVRKGHIEPVLSGADEFLGAPSRHCAGYDGGGGDCMCSASSPFHDDANRCHHLWVGKQWCLRWHDAFADLLLSL 270
The following BLAST results are available for this feature:
BLAST of EWM21469.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101699|gb|EWM21469.1|0.000e+0100.00MD-2-related lipid-recognition protein [Nannochlor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9223rna9223Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications