rna922, rna922 (mRNA) Nannochloropsis gaditana

Overview
Namerna922
Unique Namerna922
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1269
Alignment locationCM002456.1:735353..735899 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g35.842.mrna
Orig protein idgnl|cribi|Naga_100022g35.842
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:735353..735899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g35gene885Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna922rna922-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29743.1cds922Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna922 ID=rna922|Name=rna922|organism=Nannochloropsis gaditana|type=mRNA|length=1269bp
ATGCACATTTTGGTAGCTAGGACTGAAAATAAGAAGGCGGGACGGCACGC
GAGCGAGCAGCACCAACGGCAGCCACCGCAACTTTCTGACTTTCGAGTTC
TGTTAAGAGAAATCATGCGTGCCCTTATCGCTGTGTTCTCCCTGTACATC
TGTAGCGCCATGGCCTTTATGCCAACTACGCTCCCCAGTGCGTCGCGAGC
TTGCGTTAGGACAAGCGCCGGACGCAGGCGGGCGGGGACGAGGCTCACCC
CCATGATGGCGGTTGATCAGGGGAGCACGCTGAAGGTGGGCATCGTCGGT
GCCACCGGGGCGGTCGGGGAAGAGATTGTCAAGGTCTTGGGTCACCGGAA
TTTCCCAGTCTCTGAGCTCCACTTATATGCCTCTGCACGCTCTGCCGGTA
AAAGTGTTGCAACGCCATTCGGATCCGTGTCCATTGAGGAATTTGACTTG
GACAAGGCACGCGGCCTGGACGTCATTTTTCTGGCCGTGGGCGGGGATTT
CTCGAAGGAGTATGCGATCAAGCTATCGGCAACAGACGGGCCTGTGGTTA
TTGATAATTCATCCGCCTTTCGCTTGGACCCAAGTGTGCCGCTAATTGTG
CCGGAGATCAACCAGCAGGCGGCCAAGGGCAAAAAGCTTATCGCCAACCC
GAACTGTACCACTGCCATCGGGCTCATGGCGCTCTTTCCGCTCCACGTGG
CCTTTGGGATCAAAAAAGTCATCATGTCCACTTATCAAGCAGCCTCAGGA
GCAGGCGCAGAAGGTATGGACGAGTTGAAGGCGGGCATCGCAAGCTTCGT
CAAGGGGGAGCCCGTCAAGAACGAGTTCTTCGCATATCCCCTCCCCTTTA
ACGTCATTCCGCAGATTGACGTCTTCACCGACAATTTGTATACCAAGGAA
GAGATGAAGGTCACTTGGGAGGCGCGAAAGATCTTGGGCGTGCCCGATTT
ACCTGTCAGTTGCACGGCTGTCCGCATCCCCACCCTGCGCGCACATTCCG
AGGCTATCACCATCGAGACCGAGCGGCCCGTGACTCCGGACGGAGCGCGG
GAAGTTTTGGGCAAGTTTCCGGGCTTAAAAGTGGTGGACGATCCCGCCAA
GAAACTTTATCCCATGCCGCTGACTGCCACGAGCGTCTACGACGTCGAGG
TTGGACGAGTTCGTCAGAACATCGTCTTTGGAGACCATGGTCTGGACATT
TTCGTTTGCGGTGATCAGCTGCTGCGCGGAGCCGCTCTGAATGCAGTGAT
CATCGCTGAGAAGCTCTAG
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protein sequence of rna922

>rna922-protein ID=rna922-protein|Name=rna922|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MQCLTPSKPCSRDFEAIKRGGKLLGATQVSNHVCDRPTAQIFWGGQPPML
VTPRYFLELYASSIWLKIPGGKSKVKEIRRPPGCSTKETVHPSGQVITKR
FMPTLSRQMGQVLRHSPYGRWRELCTPESLH
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mRNA from alignment at CM002456.1:735353..735899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna922 ID=rna922|Name=rna922|organism=Nannochloropsis gaditana|type=mRNA|length=547bp|location=Sequence derived from alignment at CM002456.1:735353..735899- (Nannochloropsis gaditana)
ATGCAGTGCCTGACTCCTAGCAAGCCGTGCTCACGAGTATCTTCTGCGGC
GAGGCTGAAGGCGCTGCTACCACAACGAGCAATAGACTCAACCTGCTTTT
TTCGTGATCAACATAAAATAACTTCTATTCATACTGATTTATACAGGATT
TTGAGGCGATTAAGAGAGGTGGGAAGCTTTTAGGAGCAACTCAAGTGTCC
AACCATGTTTGTGATCGACCGACTGCGCAGATCTTCTGGGGAGGGCAGCC
GCGTGCCACGTCGCAAGCGCGGAGGGCACACCGCGGCGCTAAGCCATGCT
GGTTACACCGCGATATTTTTTGGAGTTATACGCCTCATCTATATGGCTAA
AAATTCCGGGGGGAAAGAGTAAAGTCAAGGAGATCAGACGACCTCCAGGC
TGCTCGACGAAAGAGACCGTACACCCCTCCGGACAAGTGATTACAAAAAG
ATTTATGCCTACATTATCACGCCAAATGGGTCAAGTGTTGAGGCATAGTC
CATATGGAAGATGGCGGGAATTGTGCACCCCGGAAAGTTTGCATTAG
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Coding sequence (CDS) from alignment at CM002456.1:735353..735899-

>rna922 ID=rna922|Name=rna922|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at CM002456.1:735353..735899- (Nannochloropsis gaditana)
CCATGCTGGTTACACCGCGATATTTTTTGGAGTTATACGCCTCATCTATA
TGGCTAAAAATTCCGGGGGGAAAGAGTAAAGTCAAGGAGATCAGACGACC
TCCAGGCTGCTCGACGAAAGAGACCGTACACCCCTCCGGACAAGTGATTA
CAAAAAGATTTATGCCTACATTATCACGCCAAATGGGTCAAGTGTTGAGG
CATAGTCCATATGGAAGATGGCGGGAATTGTGCACCCCGGAAAGTTTGCA
TTAGGATTTTGAGGCGATTAAGAGAGGTGGGAAGCTTTTAGGAGCAACTC
AAGTGTCCAACCATGTTTGTGATCGACCGACTGCGCAGATCTTCTGGGGA
GGGCAGCCGCATGCAGTGCCTGACTCCTAGCAAGCCGTGCTCACGACCAT
GCTGGTTACACCGCGATATTTTTTGGAGTTATACGCCTCATCTATATGGC
TAAAAATTCCGGGGGGAAAGAGTAAAGTCAAGGAGATCAGACGACCTCCA
GGCTGCTCGACGAAAGAGACCGTACACCCCTCCGGACAAGTGATTACAAA
AAGATTTATGCCTACATTATCACGCCAAATGGGTCAAGTGTTGAGGCATA
GTCCATATGGAAGATGGCGGGAATTGTGCACCCCGGAAAGTTTGCATTAG
GATTTTGAGGCGATTAAGAGAGGTGGGAAGCTTTTAGGAGCAACTCAAGT
GTCCAACCATGTTTGTGATCGACCGACTGCGCAGATCTTCTGGGGAGGGC
AGCCGCATGCAGTGCCTGACTCCTAGCAAGCCGTGCTCACGACCATGCTG
GTTACACCGCGATATTTTTTGGAGTTATACGCCTCATCTATATGGCTAAA
AATTCCGGGGGGAAAGAGTAAAGTCAAGGAGATCAGACGACCTCCAGGCT
GCTCGACGAAAGAGACCGTACACCCCTCCGGACAAGTGATTACAAAAAGA
TTTATGCCTACATTATCACGCCAAATGGGTCAAGTGTTGAGGCATAGTCC
ATATGGAAGATGGCGGGAATTGTGCACCCCGGAAAGTTTGCATTAGGATT
TTGAGGCGATTAAGAGAGGTGGGAAGCTTTTAGGAGCAACTCAAGTGTCC
AACCATGTTTGTGATCGACCGACTGCGCAGATCTTCTGGGGAGGGCAGCC
GCATGCAGTGCCTGACTCCTAGCAAGCCGTGCTCACGA
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Synonyms
Publications