rna9218, rna9218 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9218
Unique Name	rna9218
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1822
Alignment location	KK037252.1:128100..129945 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100019g52.506.mrna
Orig protein id	gnl\|cribi\|Naga_100019g52.506
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:128100..129945 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g52	gene8942	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9218	rna9218-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21484.1	cds9188	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:128100..129945-
coding sequence from alignment at KK037252.1:128100..129945-

mRNA sequence

>rna9218 ID=rna9218|Name=rna9218|organism=Nannochloropsis gaditana|type=mRNA|length=1822bp
TGTTCTCGTGTAGGTCTTCATACCGCCGACTTTTGTGTGGTTTTAAATCA
CTCAGCGCAATCGTAAACTCCTGCTGATTGAAAAGAATTCTTTGTACATA
CGTGAAAATTAGAAGTCAATTGGTGTTTGAGCATACGCATCACAGACCTC
TTCGTATGCCATTCGTGAGGCATGTTTGTAGCAGTACGGCTTGTAGAGCG
CAAGGCACTTTTAATCTGCTCATCCGCATGCTTTTTGCTCGAAGCGAATT
CTGTTTAAAGTGCCACAGAACGCTCAACTGTATAAAACATCGGGTATTTG
ACGCTGATAAGTTGGGCAACAGGGTATGTACTCGGGGTCTGCACGTCACA
AATACCTCAGGAGTCTTGGCGGGAAGAGTTATCTCGACGTGTCTCCCTCA
TGTGCTCGGAGGCGCGCCGGTAGACTTCATGAACGATACGAGCCGCCCTT
CCACTGAATTCTTCCTGTGAATAAGCTGAAATAGGAGGGATGTGCGGAAA
CGTGACTGATTTCCCGCTATTTTGTCAATGTAAGCCGCTACCCTCCCTTA
ACTTAATTTCCCTCCCTTTTCCATGCGCACGCACCTTGACGTAACAGGAA
ATACTACCACAAAATACTCCTACAAGAATATGTCTGGCGCAGGTAAAGGT
GCAGGCAAAGGCGGCAAGGCTGGGAAAGGAGGGAAAGGAGCGAGTGGCAA
ACGTGCCCCTCAATCCCGATCATCGCGTGCGGGCCTGCAGTTCCCTGTAG
GACGTATTCACCGCTTCCTCAAAACGCGCGTGACGACCAGCCAGCGCGTG
GGTGCCACCGCCGCCGTCTACACGGCCGCCATCCTCGAGTACCTGACCGC
CGAGGTGCTGGAGCTTGCAGGGAACGCCTGCAAGGACTTGAAGGTGAAGC
GTATCACGCCCCGGCACTTGCAGCTTGCCATTCGAGGTGACGAGGAGTTG
GACGCTCTGATCAAGGCGACCATCGCGGGCGGCGGAGTCATCCCGCACAT
CCACAAGTCTCTCATCACCAAGGCCAAGGGTGCCAAGGCTAAGTAAAGGG
ATGGATAAGCAGGAGCAGCTGAGGTGTCATTGGGTGGTGTTCCTACATGC
TTTGGCCTAGAAGGAATATTTCGACTTGTGTCGCCGAGCTTTATGTTTCC
GCCTATACATATAATGTTACCGTGTTCCGGCAACTACAGCATAAGGGAAG
AATTTACGCACGGATTTTTAGACCTCGCGAAAAGCATGAGTTCTCTCAGT
TTGGCTGACTTAAAGTGGGAACATCAGCGTGTGGGTGTTTACCGGAGTGA
CGAGATGAGAGACAACGGGTTGACGGACTTCTTGATCTTTTTGGAGTGTC
CAGGAGACACGGAGGAAACTTAATCTCGAAAAAAAAATAAAAAATCAGCA
TGTGACAGTAAGGACAAGGAGGGGACACAACGAAGAAGTTTGGAGAGGAA
AAGACTGCCATCACCCCGTAAACTCGAGGGCTTGGGAAGGAGAAAAGAAT
GGACGAGAGCGTCTTCGCATGTCCCTTATCTACCTATCATTTGTCTCCAA
GCCGCGTCCCAATTATTGGCGCGTCCATGGCGACTGAGGAGGTAGTAAAC
AGGAAAGATCGATACGCCGCCCCACCAACCAGTGTTCAAGATAAAAGTTT
GCGAAACGAAGCCCAACCCCATACCAGCGTGCCCCTTTGTTTTTATTTCT
CTAGCAATAAAAAAGATTTTTCTCTCTTCATCGTTGAACAGCACTTTTTG
CACACACACGATTCTTCGATTGCCACTCTTCACTAGATGGAACGGGCATA
GACCCCTTCGAGGCATTTTAAG

protein sequence of rna9218

>rna9218-protein ID=rna9218-protein|Name=rna9218|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MPSLVTRNLILSLVLLSSCSAFLMPNAPKPTRSVLQVGEGSTHVKELVAL
NPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRV
MGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAART
FKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVY
GRADEDFNDEVDKLANA

mRNA from alignment at KK037252.1:128100..129945-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9218 ID=rna9218|Name=rna9218|organism=Nannochloropsis gaditana|type=mRNA|length=1846bp|location=Sequence derived from alignment at KK037252.1:128100..129945- (Nannochloropsis gaditana)
CGTTCCTAGTTTCAGGCTTAACGAGTCCTCGTTGAAGTCCAGGAGCGGCC
CCCAGCGAGTTCAACGGGCAGCAATGCACCTCGGAGGCAAGTTCAATTTT
ATAACCTTGTCGTGTGATGTGTGACTCCCAACCTGTTGCCATCCCTAACG
TACCAAACGTGCTTCTTTATTTTCAAGGCACGGTGAACCTGTTCGGCACG
TGGCTTCTCTTGGCCATACTAACCCCTTTTGAGCCGGAGGGGCAATATCC
TCAGCCAAGGAACCCTCTGCTAAAAGCTTCCTCACCTCTCCCTTCTCTGC
ACTGTTTGATCCGACAGAAAACTAGCCCTTACAAAAACGAACTATGCCTT
CTCTTGTGACAAGGAATCTCATCCTCTCGCTTGTGCTGCTGTCGTCATGC
TCAGCATTTTTGATGCCCAATGCTCCGAAGTAAGTACAGTAGGAACAACG
TGAGAATGTGGGATGTTGAAGCGATCGTGGAGAAGCGCAGACGAATAGAT
ATCCGTATCAAATGCATGGAATAATTACAATTTATCATCTGCACATGCAT
AAAAAATTCAAGACCAACGAGGTCTGTTCTTCAGGTTGGAGAAGGCAGCA
CTCATGTGAAAGAACTTGTGGTAAGCCCGACAAATAATTAGCGTGCTTAA
GTTTCGTTTTCGTCTTAGGAATCATATCTCTTCAAACATTTCTTCATCCT
ATAATATGTCTTGCCCAGGCGCTTAATCCAGAAGACTATGTTGCAATAGG
GTTGGCGATGTGCTACAAAATTAATGATGGTGGAAAGCTGGATGGTACGT
GATGCAATGGCAATAAAATGAGGGTTGAAGGATTCAAAGCCCGACAAATT
TTGCCTGCTCCATGTTTCATATGACAGAGAGTTCCTTGTAAATCTCTATT
ATGAAGACTTTTTCGTTTGACTGTCATCAGTGGAAGTCGTGTGACTGTTC
TCCCTTTTCACTTTTCACCTCCCCTCCCTGTCCTCCCTCGCTTTCCAATA
TAAGAGGTTCTTGTGATGGAGCCCCTGACTGCCGGGACATTGGAGTGCCT
GGCGCTTGGCGTGCCCACATCCTACAAACGTGTGATGGGATTGACCTGCG
GAGAGCTCTTCAATGGCGAGGACCTGCGAAACCCCTCCGACGTCAATATT
GAGGCATTGCGGCCTTTGGCGAAGGGCGAGACGGTGTCGGAATGTGAAGA
TATGTTAATCCGCTCGATGGCGGCCGCACGCACCTTCAAGAGGCGTGTTG
AAGCGCAAATTATCCCCCTGGGCGAAGTGGCTGATGATTTTAACTTTAAT
ACAGAGAAGAAGCGGGTTTTAAACCAGGTCTTTGAGCCCTCCTTCGCCGA
CAACGTCAAGCAGGACAAAAGCATCGACGTGTATGGTCGGGCGGATGAGG
ACTTCAACGATGAGGTTGACAAACTCGCCAATGCTTAAGTCTGCTCTTAA
AATGCCTCGAAGGGGTCTATGCCCGTTCCATCTAGTGAAGAGTGGCAATC
GAAGAATCGTGTGTGTGCAAAAAGTGCTGTTCAACGATGAAGAGAGAAAA
ATCTTTTTTATTGCTAGAGAAATAAAAACAAAGGGGCACGCTGGTATGGG
GTTGGGCTTCGTTTCGCAAACTTTTATCTTGAACACTGGTTGGTGGGGCG
GCGTATCGATCTTTCCTGTTTACTACCTCCTCAGTCGCCATGGACGCGCC
AATAATTGGGACGCGGCTTGGAGACAAATGATAGGTAGATAAGGGACATG
CGAAGACGCTCTCGTCCATTCTTTTCTCCTTCCCAAGCCCTCGAGTTTAC
GGGGTGATGGCAGTCTTTTCCTCTCCAAACTTCTTCGTTGTGTCCC

Coding sequence (CDS) from alignment at KK037252.1:128100..129945-

>rna9218 ID=rna9218|Name=rna9218|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at KK037252.1:128100..129945- (Nannochloropsis gaditana)
AGGTTCTTGTGATGGAGCCCCTGACTGCCGGGACATTGGAGTGCCTGGCG
CTTGGCGTGCCCACATCCTACAAACGTGTGATGGGATTGACCTGCGGAGA
GCTCTTCAATGGCGAGGACCTGCGAAACCCCTCCGACGTCAATATTGAGG
CATTGCGGCCTTTGGCGAAGGGCGAGACGGTGTCGGAATGTGAAGATATG
TTAATCCGCTCGATGGCGGCCGCACGCACCTTCAAGAGGCGTGTTGAAGC
GCAAATTATCCCCCTGGGCGAAGTGGCTGATGATTTTAACTTTAATACAG
AGAAGAAGCGGGTTTTAAACCAGGTCTTTGAGCCCTCCTTCGCCGACAAC
GTCAAGCAGGACAAAAGCATCGACGTGTATGGTCGGGCGGATGAGGACTT
CAACGATGAGGTTGACAAACTCGCCAATGCTTAAGCGCTTAATCCAGAAG
ACTATGTTGCAATAGGGTTGGCGATGTGCTACAAAATTAATGATGGTGGA
AAGCTGGATGACCAACGAGGTCTGTTCTTCAGGTTGGAGAAGGCAGCACT
CATGTGAAAGAACTTGTGATGCCTTCTCTTGTGACAAGGAATCTCATCCT
CTCGCTTGTGCTGCTGTCGTCATGCTCAGCATTTTTGATGCCCAATGCTC
CGAAAGGTTCTTGTGATGGAGCCCCTGACTGCCGGGACATTGGAGTGCCT
GGCGCTTGGCGTGCCCACATCCTACAAACGTGTGATGGGATTGACCTGCG
GAGAGCTCTTCAATGGCGAGGACCTGCGAAACCCCTCCGACGTCAATATT
GAGGCATTGCGGCCTTTGGCGAAGGGCGAGACGGTGTCGGAATGTGAAGA
TATGTTAATCCGCTCGATGGCGGCCGCACGCACCTTCAAGAGGCGTGTTG
AAGCGCAAATTATCCCCCTGGGCGAAGTGGCTGATGATTTTAACTTTAAT
ACAGAGAAGAAGCGGGTTTTAAACCAGGTCTTTGAGCCCTCCTTCGCCGA
CAACGTCAAGCAGGACAAAAGCATCGACGTGTATGGTCGGGCGGATGAGG
ACTTCAACGATGAGGTTGACAAACTCGCCAATGCTTAAGCGCTTAATCCA
GAAGACTATGTTGCAATAGGGTTGGCGATGTGCTACAAAATTAATGATGG
TGGAAAGCTGGATGACCAACGAGGTCTGTTCTTCAGGTTGGAGAAGGCAG
CACTCATGTGAAAGAACTTGTGATGCCTTCTCTTGTGACAAGGAATCTCA
TCCTCTCGCTTGTGCTGCTGTCGTCATGCTCAGCATTTTTGATGCCCAAT
GCTCCGAAAGGTTCTTGTGATGGAGCCCCTGACTGCCGGGACATTGGAGT
GCCTGGCGCTTGGCGTGCCCACATCCTACAAACGTGTGATGGGATTGACC
TGCGGAGAGCTCTTCAATGGCGAGGACCTGCGAAACCCCTCCGACGTCAA
TATTGAGGCATTGCGGCCTTTGGCGAAGGGCGAGACGGTGTCGGAATGTG
AAGATATGTTAATCCGCTCGATGGCGGCCGCACGCACCTTCAAGAGGCGT
GTTGAAGCGCAAATTATCCCCCTGGGCGAAGTGGCTGATGATTTTAACTT
TAATACAGAGAAGAAGCGGGTTTTAAACCAGGTCTTTGAGCCCTCCTTCG
CCGACAACGTCAAGCAGGACAAAAGCATCGACGTGTATGGTCGGGCGGAT
GAGGACTTCAACGATGAGGTTGACAAACTCGCCAATGCTTAAGCGCTTAA
TCCAGAAGACTATGTTGCAATAGGGTTGGCGATGTGCTACAAAATTAATG
ATGGTGGAAAGCTGGATGACCAACGAGGTCTGTTCTTCAGGTTGGAGAAG
GCAGCACTCATGTGAAAGAACTTGTGATGCCTTCTCTTGTGACAAGGAAT
CTCATCCTCTCGCTTGTGCTGCTGTCGTCATGCTCAGCATTTTTGATGCC
CAATGCTCCGAAAGGTTCTTGTGATGGAGCCCCTGACTGCCGGGACATTG
GAGTGCCTGGCGCTTGGCGTGCCCACATCCTACAAACGTGTGATGGGATT
GACCTGCGGAGAGCTCTTCAATGGCGAGGACCTGCGAAACCCCTCCGACG
TCAATATTGAGGCATTGCGGCCTTTGGCGAAGGGCGAGACGGTGTCGGAA
TGTGAAGATATGTTAATCCGCTCGATGGCGGCCGCACGCACCTTCAAGAG
GCGTGTTGAAGCGCAAATTATCCCCCTGGGCGAAGTGGCTGATGATTTTA
ACTTTAATACAGAGAAGAAGCGGGTTTTAAACCAGGTCTTTGAGCCCTCC
TTCGCCGACAACGTCAAGCAGGACAAAAGCATCGACGTGTATGGTCGGGC
GGATGAGGACTTCAACGATGAGGTTGACAAACTCGCCAATGCTTAAGCGC
TTAATCCAGAAGACTATGTTGCAATAGGGTTGGCGATGTGCTACAAAATT
AATGATGGTGGAAAGCTGGATGACCAACGAGGTCTGTTCTTCAGGTTGGA
GAAGGCAGCACTCATGTGAAAGAACTTGTGATGCCTTCTCTTGTGACAAG
GAATCTCATCCTCTCGCTTGTGCTGCTGTCGTCATGCTCAGCATTTTTGA
TGCCCAATGCTCCGAA

Synonyms

Publications