EWM21484.1, cds9188 (CDS) Nannochloropsis gaditana

Overview
NameEWM21484.1
Unique Namecds9188
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:129517..129602 -
Alignment locationKK037252.1:129326..129383 -
Alignment locationKK037252.1:129152..129227 -
Alignment locationKK037252.1:128508..128941 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21484.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g52.506.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:129517..129602 -
KK037252.1supercontigKK037252.1:129326..129383 -
KK037252.1supercontigKK037252.1:129152..129227 -
KK037252.1supercontigKK037252.1:128508..128941 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|585101714|gb|EWM21484.1| (hypothetical protein Naga_100019g52 [Nannochloropsis gaditana])

HSP 1 Score: 442.965 bits (1138), Expect = 2.472e-157
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MPSLVTRNLILSLVLLSSCSAFLMPNAPKPTRSVLQVGEGSTHVKELVALNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGRADEDFNDEVDKLANA 217
            MPSLVTRNLILSLVLLSSCSAFLMPNAPKPTRSVLQVGEGSTHVKELVALNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGRADEDFNDEVDKLANA
Sbjct:    1 MPSLVTRNLILSLVLLSSCSAFLMPNAPKPTRSVLQVGEGSTHVKELVALNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGRADEDFNDEVDKLANA 217          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|873231613|emb|CEM07801.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 200.29 bits (508), Expect = 4.677e-61
Identity = 103/196 (52.55%), Postives = 137/196 (69.90%), Query Frame = 0
Query:   33 SVLQVGEGSTHVKELV----ALNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGRADEDFNDE-------VDKLANA 217
            SVL+ G G T   +++     L  +DY+A+GLA CY +ND  KL+E  V+EPLTAGTLE +  GV TSY+RVM LT G+LF G+D+ +P+   + A+ P+  GE     E +  R +AAARTF+RR EAQ++ LGEVADDFNF+TE+KR+LNQ FEPSF DNVKQ  SIDVYGR + + +DE       +++LANA
Sbjct:   51 SVLRAG-GVTLPHDMIDPYAPLKSDDYIALGLACCYLLNDKNKLEEYWVIEPLTAGTLETIDRGVDTSYRRVMALTLGDLFEGDDVNSPTGARLSAVEPMISGEEARFSEALTERVLAAARTFRRRPEAQLLDLGEVADDFNFSTERKRILNQKFEPSFDDNVKQHSSIDVYGRTESESSDEQAELDKQIEELANA 245          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|299115445|emb|CBN75610.1| (conserved hypothetical protei [Ectocarpus siliculosus])

HSP 1 Score: 164.081 bits (414), Expect = 5.249e-47
Identity = 85/162 (52.47%), Postives = 111/162 (68.52%), Query Frame = 0
Query:   47 LVALNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLA--LGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGRADED 206
            LV L  +DYVA GLA C+ +ND  KLDE  V EPLTA TLE +A    + TSYKRV      ++F G   R P+ + ++ L+ L    T   CE+ + R++AAART+KRRVEAQ+   G++ + FNF+TE+KR+LN  FEPSF DNVKQDKSIDVYGR +E+
Sbjct:   74 LVPLEDDDYVAFGLACCFVMNDNLKLDEYYVYEPLTAATLETIASSQSLETSYKRVTAFHAKDIFEGPPAR-PTGIQVDKLKILDGDVTAHICENPVERTLAAARTYKRRVEAQMCGYGDLLEGFNFSTERKRILNHKFEPSFDDNVKQDKSIDVYGREEEE 234          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|545707580|ref|XP_005706104.1| (hypothetical protein Gasu_30230 [Galdieria sulphuraria] >gi|452822566|gb|EME29584.1| hypothetical protein Gasu_30230 [Galdieria sulphuraria])

HSP 1 Score: 142.124 bits (357), Expect = 1.869e-38
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 0
Query:   50 LNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRP-LAKGETVSECEDMLIRSMAAARTFKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGR-ADEDFNDEVDKLANA 217
            + P++Y  +GLA C++ +  GKL E++V+EP+   TLE +  GVPTSYKR++                  ++I ++ P   + E VS CE+   R  AA RT++ R+EA+ I LGEV    NF+T  KRVLN+ FEPSF DNVKQD SIDVYGR  DE+   E++KL NA
Sbjct:   75 VKPDEYTVLGLAFCFQRDSNGKLQELVVIEPVPTSTLETILQGVPTSYKRLVATVYSRA-----------MDISSIPPAFVEDERVSFCENYSERLQAATRTYRARLEAKKIQLGEVYVTINFSTSPKRVLNEKFEPSFEDNVKQDISIDVYGRKKDEEVKSEIEKLYNA 233          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|1189390193|gb|OSX77157.1| (hypothetical protein BU14_0159s0012 [Porphyra umbilicalis])

HSP 1 Score: 127.102 bits (318), Expect = 6.968e-33
Identity = 91/219 (41.55%), Postives = 124/219 (56.62%), Query Frame = 0
Query:   13 LVLLSSCSAF----LMPNAPKPTRSVLQVGEGSTHVKELVALNPE--DYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLE-CLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRR-VEAQIIPLGEV--ADD--FNFNTEK-KRVLNQVFEPSFADNVKQDKSIDVYGRADEDFN-DEVDKLANA 217
            +  + SC AF    +   AP    SV+           +   + E  DY  +GLA+CY+ N   KLD VLV+EPL+ GTLE     G PTSYKR++G T   L +     NPS++  + L    +G++ S  ED   R  AAARTFKRR +   I+ +GEV  A+D    F T+  +R+LN+ +EP F DNVKQDK+IDVYGR +E+    +V KL NA
Sbjct:    1 MAFVGSCGAFGTRSVAKRAPTARPSVVVAAPTPRMAWNIEGQDVEVSDYCPVGLAVCYQRNQNNKLDAVLVVEPLSTGTLENVTGTGQPTSYKRILGATIEGLPD-----NPSELPEDFL----QGDSASFSEDFAERMCAAARTFKRRPISKGILGVGEVKTAEDGTLTFCTDGIQRILNEEWEPKFDDNVKQDKTIDVYGRGEEEGGAADVQKLYNA 210          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|1119702440|ref|WP_072620532.1| (hypothetical protein [Spirulina major])

HSP 1 Score: 112.849 bits (281), Expect = 3.686e-28
Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = 0
Query:   54 DYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQ-IIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQ 193
            DY   GLA C+ I D G++ E+ V+EP+ +  LE L  G+PTSY+   G T  E F G++LR PS+   EA            C++   R++AA+RT+KR   AQ ++P+GE  DDFN++TE+KRVLN     S  DNVKQ
Sbjct:   16 DYCVFGLATCF-IRDEGEVREIHVVEPIPSAALEALYKGIPTSYQVAYGKTLAEFFEGDNLRMPSEFPGEA----------QFCDEFATRAVAASRTYKRSQAAQALLPVGEKKDDFNYSTERKRVLNTENVVSTEDNVKQ 145          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|302818442|ref|XP_002990894.1| (hypothetical protein SELMODRAFT_429288 [Selaginella moellendorffii] >gi|300141225|gb|EFJ07938.1| hypothetical protein SELMODRAFT_429288 [Selaginella moellendorffii])

HSP 1 Score: 114.775 bits (286), Expect = 9.769e-28
Identity = 66/167 (39.52%), Postives = 89/167 (53.29%), Query Frame = 0
Query:   51 NPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQ----IIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGR-ADEDFNDEVD 212
            NP+D+V +GL  C+  +  GKL +  V+EP+ AG LEC+  G  T YK V  +        +  + P ++   A            CED   R+  AAR++ R    +     IPLG V  DFN+N E KRVLN+V   + ADN+KQD SIDVYGR  D+D N   D
Sbjct:   72 NPDDFVVLGLGHCFIEDSNGKLQDHFVLEPIGAGALECMENGGKTCYKHVASMHLSTALAQDHSQLPEELRSGAF-----------CEDFAFRTKCAARSWMRDYPQEKIVRYIPLGTVRSDFNYNLEDKRVLNKVNIVTDADNIKQDMSIDVYGRKKDDDANTATD 227          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|302801985|ref|XP_002982748.1| (hypothetical protein SELMODRAFT_422124 [Selaginella moellendorffii] >gi|300149338|gb|EFJ15993.1| hypothetical protein SELMODRAFT_422124 [Selaginella moellendorffii])

HSP 1 Score: 114.39 bits (285), Expect = 1.098e-27
Identity = 66/167 (39.52%), Postives = 89/167 (53.29%), Query Frame = 0
Query:   51 NPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQ----IIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQDKSIDVYGR-ADEDFNDEVD 212
            NP+D+V +GL  C+  +  GKL +  V+EP+ AG LEC+  G  T YK V  +        +  + P ++   A            CED   R+  AAR++ R    +     IPLG V  DFN+N E KRVLN+V   + ADN+KQD SIDVYGR  D+D N   D
Sbjct:   72 NPDDFVVLGLGHCFIEDSNGKLQDHFVLEPIGAGALECMENGGKTCYKHVASMHLSTALAQDHSQLPEELRSGAF-----------CEDFAFRTKCAARSWMRDYPQEKIVRYIPLGTVRSDFNYNLEDKRVLNKVNIVTDADNIKQDMSIDVYGRKKDDDANTATD 227          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|1213733982|gb|OWY66670.1| (hypothetical protein B7486_35395 [cyanobacterium TDX16])

HSP 1 Score: 109.383 bits (272), Expect = 8.684e-27
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 0
Query:   50 LNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQ-IIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQ 193
            L+PEDYVAIGLA C+ + + G++ ++ ++EP+ +  LE +A G+PTSYK V   T G +  G+ L+ P+     A             +D   R++AAART+K R  A+ +IPLG   +DFN++TE+KRVLN     S  DNVKQ
Sbjct:   13 LSPEDYVAIGLATCF-VKEDGEVRDLEIIEPIPSAALEAIAKGIPTSYKLVSATTLGTVLAGDKLQIPAGFPTSA----------QFSDDFGQRAIAAARTYKSRTVAKDLIPLGTTREDFNYSTERKRVLNMKRVVSKDDNVKQ 146          
BLAST of EWM21484.1 vs. NCBI_GenBank
Match: gi|496701932|ref|WP_009343475.1| (hypothetical protein [Raphidiopsis brookii] >gi|281198045|gb|EFA72939.1| conserved hypothetical protein [Raphidiopsis brookii D9])

HSP 1 Score: 108.997 bits (271), Expect = 1.321e-26
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 0
Query:   50 LNPEDYVAIGLAMCYKINDGGKLDEVLVMEPLTAGTLECLALGVPTSYKRVMGLTCGELFNGEDLRNPSDVNIEALRPLAKGETVSECEDMLIRSMAAARTFKRRVEAQ-IIPLGEVADDFNFNTEKKRVLNQVFEPSFADNVKQ 193
            L  +DY+ IGLA C+   DG ++ E+ ++EP+ +  LE +  G+PTSYK V   T G + +GE+L          L P    ET    E+ L R+ +A RT+KRR  AQ  IPLG    DFN++TE+KRVLN     +  DN+KQ
Sbjct:   13 LRTDDYIVIGLATCFYKEDG-EVHELEIIEPIPSAALEAIIKGIPTSYKLVCATTLGSILDGENL----------LLPSGFPETAQFSEEFLQRTFSATRTYKRRESAQSFIPLGTTKSDFNYSTERKRVLNAARVVTKEDNIKQ 146          
The following BLAST results are available for this feature:
BLAST of EWM21484.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101714|gb|EWM21484.1|2.472e-157100.00hypothetical protein Naga_100019g52 [Nannochlorops... [more]
gi|873231613|emb|CEM07801.1|4.677e-6152.55unnamed protein product [Vitrella brassicaformis C... [more]
gi|299115445|emb|CBN75610.1|5.249e-4752.47conserved hypothetical protei [Ectocarpus siliculo... [more]
gi|545707580|ref|XP_005706104.1|1.869e-3845.29hypothetical protein Gasu_30230 [Galdieria sulphur... [more]
gi|1189390193|gb|OSX77157.1|6.968e-3341.55hypothetical protein BU14_0159s0012 [Porphyra umbi... [more]
gi|1119702440|ref|WP_072620532.1|3.686e-2843.97hypothetical protein [Spirulina major][more]
gi|302818442|ref|XP_002990894.1|9.769e-2839.52hypothetical protein SELMODRAFT_429288 [Selaginell... [more]
gi|302801985|ref|XP_002982748.1|1.098e-2739.52hypothetical protein SELMODRAFT_422124 [Selaginell... [more]
gi|1213733982|gb|OWY66670.1|8.684e-2742.07hypothetical protein B7486_35395 [cyanobacterium T... [more]
gi|496701932|ref|WP_009343475.1|1.321e-2641.38hypothetical protein [Raphidiopsis brookii] >gi|28... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9218rna9218Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications